Cow genome map
| Conread name: | Lym2-sn47_E05.f |
| Conread position: | 8-651 |
| Cow position: | chr17:43989519-43990172 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 160 |
| Conread position: | 11-298 |
| Cow position: | chr17:42266437-42266710 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 106, 137 |
| Conread position: | 16-153 |
| Cow position: | chr17:12669398-12669259 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 102, 22 |
| Conread position: | 16-270 |
| Cow position: | chr17:6611462-6611205 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 16-285 |
| Cow position: | chr17:2263133-2263404 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 101, 150 |
| Conread position: | 16-347 |
| Cow position: | chr17:20390061-20389726 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 16-392 |
| Cow position: | chr17:4941691-4941319 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 102 |
| Conread position: | 16-400 |
| Cow position: | chr17:21769983-21769592 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 381 |
| Conread position: | 16-464 |
| Cow position: | chr17:33284808-33284375 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 124 |
| Conread position: | 16-559 |
| Cow position: | chr17:150859-150333 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 201 |
| Conread position: | 16-606 |
| Cow position: | chr17:6069577-6070168 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 10 |
| Conread position: | 16-614 |
| Cow position: | chr17:3655268-3654656 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 16-624 |
| Cow position: | chr17:4675142-4675757 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 72 |
| Conread position: | 16-648 |
| Cow position: | chr17:40805834-40806474 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 10 |
| Conread position: | 16-651 |
| Cow position: | chr17:182601-183241 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 123 |
| Conread position: | 16-651 |
| Cow position: | chr17:5227651-5228291 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 10 |
| Conread position: | 16-651 |
| Cow position: | chr17:9080396-9079751 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 555 |
| Conread position: | 16-651 |
| Cow position: | chr17:11783879-11784537 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 16-651 |
| Cow position: | chr17:15436807-15437454 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 498 |
| Conread position: | 16-651 |
| Cow position: | chr17:15851714-15852363 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 16-651 |
| Cow position: | chr17:20086739-20086106 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 69 |
| Conread position: | 16-651 |
| Cow position: | chr17:39049239-39049887 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 17-281 |
| Cow position: | chr17:31767013-31766744 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 17-651 |
| Cow position: | chr17:23323426-23322778 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 383 |
| Conread position: | 17-651 |
| Cow position: | chr17:24783188-24783832 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 179 |
| Conread position: | 17-651 |
| Cow position: | chr17:27793752-27793113 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 266 |
| Conread position: | 18-651 |
| Cow position: | chr17:24028975-24028335 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 135 |
| Conread position: | 18-651 |
| Cow position: | chr17:34157147-34157791 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 588 |
| Conread position: | 19-357 |
| Cow position: | chr17:6120744-6121081 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 100 |
| Conread position: | 19-649 |
| Cow position: | chr17:2247058-2246418 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 11 |
| Conread position: | 19-649 |
| Cow position: | chr17:20099439-20098816 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 131 |
| Conread position: | 19-651 |
| Cow position: | chr17:4083051-4083683 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 209 |
| Conread position: | 23-445 |
| Cow position: | chr17:13675256-13674828 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 99 |
| Conread position: | 23-557 |
| Cow position: | chr17:1656815-1656306 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 26 |
| Conread position: | 23-648 |
| Cow position: | chr17:16121521-16120939 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 76 |
| Conread position: | 23-651 |
| Cow position: | chr17:2077963-2077322 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 37 |
| Conread position: | 23-651 |
| Cow position: | chr17:19609152-19608535 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 25 |
| Conread position: | 24-448 |
| Cow position: | chr17:22559003-22559423 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 124 |
| Conread position: | 24-650 |
| Cow position: | chr17:8202988-8203603 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 85 |
| Conread position: | 24-651 |
| Cow position: | chr17:4061131-4061780 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 58 |
| Conread position: | 24-651 |
| Cow position: | chr17:11086693-11086057 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 307 |
| Conread position: | 24-651 |
| Cow position: | chr17:14215994-14215378 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 303 |
| Conread position: | 24-651 |
| Cow position: | chr17:15142322-15141687 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 234 |
| Conread position: | 25-153 |
| Cow position: | chr17:22133233-22133364 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 25-510 |
| Cow position: | chr17:2580659-2581151 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 83 |
| Conread position: | 25-606 |
| Cow position: | chr17:14240534-14241129 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 167 |
| Conread position: | 25-651 |
| Cow position: | chr17:6260895-6261529 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 135 |
| Conread position: | 26-650 |
| Cow position: | chr17:20080836-20080227 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 133 |
| Conread position: | 27-612 |
| Cow position: | chr17:251186-251775 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 75 |
| Conread position: | 28-549 |
| Cow position: | chr17:23038618-23039132 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 22 |
| Conread position: | 55-491 |
| Cow position: | chr17:2174867-2175289 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 64 |
| Conread position: | 57-651 |
| Cow position: | chr17:14936907-14936304 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 277 |
| Conread position: | 60-651 |
| Cow position: | chr17:1786884-1786300 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 115-651 |
| Cow position: | chr17:3640773-3640235 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 48 |
| Conread position: | 124-651 |
| Cow position: | chr17:28027364-28026837 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 21 |
| Conread position: | 140-387 |
| Cow position: | chr17:2555405-2555157 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 158, 19 |
| Conread position: | 159-651 |
| Cow position: | chr17:733174-732672 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 143 |
| Conread position: | 170-464 |
| Cow position: | chr17:10841945-10842238 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 128, 49 |
| Conread position: | 183-651 |
| Cow position: | chr17:20489518-20489974 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 51 |
| Conread position: | 223-651 |
| Cow position: | chr17:15326514-15326951 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 42 |
| Conread position: | 227-387 |
| Cow position: | chr17:4346759-4346601 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 70, 53 |
| Conread position: | 235-651 |
| Cow position: | chr17:13967173-13967596 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 239 |
| Conread position: | 242-651 |
| Cow position: | chr17:29302010-29302427 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 93 |
| Conread position: | 341-651 |
| Cow position: | chr17:6121140-6121456 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 351-651 |
| Cow position: | chr17:39807-40110 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 373-651 |
| Cow position: | chr17:17257302-17257020 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 410-651 |
| Cow position: | chr17:20415031-20414790 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 451-651 |
| Cow position: | chr17:45271649-45271449 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 484-651 |
| Cow position: | chr17:34574246-34574413 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.