Cow genome map

Conread name: Lym2-sn47_E05.f

Conread position: 14-651
Cow position: chr2:5903641-5903020 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 12

Conread position: 16-232
Cow position: chr2:37789227-37789020 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 16-361
Cow position: chr2:28619274-28618940 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 64

Conread position: 16-403
Cow position: chr2:41048369-41047982 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 247

Conread position: 16-405
Cow position: chr2:28613657-28613257 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 175

Conread position: 16-436
Cow position: chr2:17424533-17424970 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 16-442
Cow position: chr2:13481987-13481589 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 298
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 252, 77

Conread position: 16-459
Cow position: chr2:44990620-44990167 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 16

Conread position: 16-503
Cow position: chr2:42332208-42331712 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 32

Conread position: 16-531
Cow position: chr2:51617934-51618469 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 53

Conread position: 16-546
Cow position: chr2:2412115-2411566 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 78

Conread position: 16-586
Cow position: chr2:49628458-49629019 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 132

Conread position: 16-587
Cow position: chr2:3323880-3323303 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 238

Conread position: 16-594
Cow position: chr2:36277712-36277155 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 375
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 66, 86

Conread position: 16-639
Cow position: chr2:3789173-3788575 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 412
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 284, 32

Conread position: 16-639
Cow position: chr2:15576157-15575533 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 54

Conread position: 16-646
Cow position: chr2:53330443-53331124 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 162

Conread position: 16-651
Cow position: chr2:247196-246564 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 8

Conread position: 16-651
Cow position: chr2:364387-363742 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 16-651
Cow position: chr2:4402477-4401825 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 70

Conread position: 16-651
Cow position: chr2:9189357-9188720 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 35

Conread position: 16-651
Cow position: chr2:9908595-9909249 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 158

Conread position: 16-651
Cow position: chr2:9958386-9957747 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 201

Conread position: 16-651
Cow position: chr2:10610965-10610319 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 224

Conread position: 16-651
Cow position: chr2:13045032-13044382 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 16-651
Cow position: chr2:16074851-16074214 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 180

Conread position: 16-651
Cow position: chr2:25028611-25027980 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 117

Conread position: 16-651
Cow position: chr2:26905073-26904447 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 132

Conread position: 16-651
Cow position: chr2:26922107-26922753 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 16-651
Cow position: chr2:28640163-28639517 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 259

Conread position: 16-651
Cow position: chr2:35356697-35357310 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 48

Conread position: 16-651
Cow position: chr2:36052330-36051700 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 47

Conread position: 16-651
Cow position: chr2:36981062-36981712 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 16

Conread position: 16-651
Cow position: chr2:39422305-39422949 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 537

Conread position: 16-651
Cow position: chr2:41687451-41688093 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 132

Conread position: 16-651
Cow position: chr2:47037753-47037106 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 16-651
Cow position: chr2:52617156-52617801 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 218

Conread position: 16-651
Cow position: chr2:54738172-54738812 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 35

Conread position: 18-386
Cow position: chr2:36992869-36993227 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 264
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 70, 26

Conread position: 18-645
Cow position: chr2:78743266-78743874 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 54

Conread position: 18-649
Cow position: chr2:34051841-34052486 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 8

Conread position: 18-651
Cow position: chr2:8119228-8119868 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 8

Conread position: 18-651
Cow position: chr2:28648919-28648283 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 130

Conread position: 19-539
Cow position: chr2:19225564-19226083 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 63

Conread position: 19-606
Cow position: chr2:55483466-55482880 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 14

Conread position: 19-651
Cow position: chr2:2087482-2086843 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 271

Conread position: 19-651
Cow position: chr2:53540622-53541265 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 264

Conread position: 19-651
Cow position: chr2:57336229-57336873 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 308

Conread position: 23-345
Cow position: chr2:1114220-1114536 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 234
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 80, 215

Conread position: 24-275
Cow position: chr2:3834276-3834027 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 97

Conread position: 24-359
Cow position: chr2:78763336-78763666 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 35

Conread position: 24-644
Cow position: chr2:47602576-47601945 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 25-161
Cow position: chr2:5869691-5869554 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 91, 47

Conread position: 25-350
Cow position: chr2:49605631-49605950 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 82

Conread position: 25-356
Cow position: chr2:77129814-77129488 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 224
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 85, 148

Conread position: 25-452
Cow position: chr2:1691659-1692088 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 205

Conread position: 25-645
Cow position: chr2:16900949-16901575 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 124

Conread position: 25-651
Cow position: chr2:574283-574911 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 123

Conread position: 25-651
Cow position: chr2:11158432-11157795 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 83

Conread position: 25-651
Cow position: chr2:12223584-12222952 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 141

Conread position: 25-651
Cow position: chr2:80292063-80291437 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 166

Conread position: 26-651
Cow position: chr2:45938991-45938376 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 150

Conread position: 26-651
Cow position: chr2:81257859-81258502 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 242

Conread position: 27-651
Cow position: chr2:25887855-25887224 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 133

Conread position: 28-651
Cow position: chr2:32434626-32434004 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 89

Conread position: 29-603
Cow position: chr2:44934286-44933714 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 90

Conread position: 30-651
Cow position: chr2:32656341-32656960 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 128

Conread position: 41-553
Cow position: chr2:20872789-20872269 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 11

Conread position: 41-651
Cow position: chr2:32458337-32457734 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 34

Conread position: 44-651
Cow position: chr2:6673946-6674556 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 8

Conread position: 48-651
Cow position: chr2:14210085-14209497 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 118

Conread position: 49-651
Cow position: chr2:6006126-6005523 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 99

Conread position: 55-645
Cow position: chr2:10264684-10264094 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 90

Conread position: 68-651
Cow position: chr2:54693694-54694264 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 51

Conread position: 72-651
Cow position: chr2:24471889-24471312 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 45

Conread position: 72-651
Cow position: chr2:52063504-52064085 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 35

Conread position: 86-387
Cow position: chr2:41154571-41154875 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 80

Conread position: 86-557
Cow position: chr2:16291437-16291917 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 198

Conread position: 89-638
Cow position: chr2:905030-905574 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 69

Conread position: 107-385
Cow position: chr2:36076475-36076197 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 12

Conread position: 123-503
Cow position: chr2:51988996-51988610 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 86

Conread position: 129-400
Cow position: chr2:5869551-5869291 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 200
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 167, 89

Conread position: 140-314
Cow position: chr2:7629518-7629693 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 156, 0

Conread position: 149-475
Cow position: chr2:81504074-81504418 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 235
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 78, 19

Conread position: 153-386
Cow position: chr2:211465-211234 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 177
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 143, 37

Conread position: 170-351
Cow position: chr2:11558620-11558802 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 148
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 128, 0

Conread position: 170-651
Cow position: chr2:12696630-12696143 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 60

Conread position: 181-647
Cow position: chr2:24926266-24926736 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 142

Conread position: 194-651
Cow position: chr2:10731996-10731535 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 56

Conread position: 204-651
Cow position: chr2:72688483-72688933 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 19

Conread position: 221-639
Cow position: chr2:14823937-14824346 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 59

Conread position: 229-649
Cow position: chr2:56888634-56889062 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 75

Conread position: 247-639
Cow position: chr2:22078817-22079220 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 126

Conread position: 269-576
Cow position: chr2:12363049-12362731 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 287-651
Cow position: chr2:13553523-13553893 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 84

Conread position: 295-651
Cow position: chr2:42361308-42360944 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 8

Conread position: 313-606
Cow position: chr2:37789028-37788731 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 217
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 37, 17

Conread position: 336-651
Cow position: chr2:62729515-62729836 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 339-651
Cow position: chr2:11558856-11559175 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 428-651
Cow position: chr2:49303192-49302970 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 57, 0

Conread position: 431-650
Cow position: chr2:11718894-11719114 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 148
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 16, 145

Conread position: 445-651
Cow position: chr2:67188728-67188932 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 103, 0

Conread position: 458-651
Cow position: chr2:46049104-46048911 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.