Cow genome map
| Conread name: | Lym2-sn47_E05.f |
| Conread position: | 16-200 |
| Cow position: | chr21:29625408-29625221 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 16-224 |
| Cow position: | chr21:18817234-18817022 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 101, 47 |
| Conread position: | 16-227 |
| Cow position: | chr21:11452240-11452025 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 16-273 |
| Cow position: | chr21:7063814-7064074 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 16-285 |
| Cow position: | chr21:27036087-27035815 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 16-294 |
| Cow position: | chr21:468168-468448 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 100, 164 |
| Conread position: | 16-387 |
| Cow position: | chr21:23804796-23804439 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 281, 28 |
| Conread position: | 16-437 |
| Cow position: | chr21:35145071-35145486 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 132 |
| Conread position: | 16-449 |
| Cow position: | chr21:12054706-12054263 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 175 |
| Conread position: | 16-471 |
| Cow position: | chr21:34822900-34822434 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 16-560 |
| Cow position: | chr21:27567065-27567608 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 60 |
| Conread position: | 16-593 |
| Cow position: | chr21:11506923-11507512 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 16-603 |
| Cow position: | chr21:31639242-31639821 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 32 |
| Conread position: | 16-651 |
| Cow position: | chr21:2512159-2512805 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 16-651 |
| Cow position: | chr21:28256737-28257377 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 258 |
| Conread position: | 16-651 |
| Cow position: | chr21:30598168-30597514 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 222 |
| Conread position: | 16-651 |
| Cow position: | chr21:37372550-37373182 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 117 |
| Conread position: | 16-651 |
| Cow position: | chr21:39426373-39427020 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 453 |
| Conread position: | 16-651 |
| Cow position: | chr21:47942259-47942903 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 456 |
| Conread position: | 18-651 |
| Cow position: | chr21:147240-147876 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 199 |
| Conread position: | 18-651 |
| Cow position: | chr21:26849704-26849077 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 101 |
| Conread position: | 19-358 |
| Cow position: | chr21:28736490-28736825 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 87 |
| Conread position: | 19-651 |
| Cow position: | chr21:3780085-3780730 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 23-217 |
| Cow position: | chr21:9893212-9893405 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 59 |
| Conread position: | 23-651 |
| Cow position: | chr21:30392-30984 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 47 |
| Conread position: | 23-651 |
| Cow position: | chr21:6625842-6626484 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 209 |
| Conread position: | 24-651 |
| Cow position: | chr21:1286886-1286245 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 99 |
| Conread position: | 24-651 |
| Cow position: | chr21:26635837-26635201 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 172 |
| Conread position: | 25-534 |
| Cow position: | chr21:5012384-5011877 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 42 |
| Conread position: | 25-622 |
| Cow position: | chr21:33253503-33254108 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 134 |
| Conread position: | 25-649 |
| Cow position: | chr21:10568024-10568652 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 137 |
| Conread position: | 25-651 |
| Cow position: | chr21:31514995-31514361 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 302 |
| Conread position: | 25-651 |
| Cow position: | chr21:40270351-40269716 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 41 |
| Conread position: | 26-648 |
| Cow position: | chr21:5018463-5019095 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 82 |
| Conread position: | 26-649 |
| Cow position: | chr21:4588655-4588064 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 123 |
| Conread position: | 27-651 |
| Cow position: | chr21:2417540-2418160 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 43 |
| Conread position: | 33-606 |
| Cow position: | chr21:2712265-2712807 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 95 |
| Conread position: | 56-384 |
| Cow position: | chr21:25783204-25783542 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 60, 101 |
| Conread position: | 57-651 |
| Cow position: | chr21:19612110-19612716 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 86 |
| Conread position: | 65-651 |
| Cow position: | chr21:29004168-29003564 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 35 |
| Conread position: | 95-650 |
| Cow position: | chr21:468295-468854 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 48 |
| Conread position: | 95-651 |
| Cow position: | chr21:34655234-34655786 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 13 |
| Conread position: | 101-606 |
| Cow position: | chr21:38801834-38802348 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 21 |
| Conread position: | 102-645 |
| Cow position: | chr21:9893369-9893917 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 104 |
| Conread position: | 115-650 |
| Cow position: | chr21:28613737-28614268 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 386 |
| Conread position: | 120-651 |
| Cow position: | chr21:26836603-26837146 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 37 |
| Conread position: | 139-651 |
| Cow position: | chr21:31250450-31250949 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 52 |
| Conread position: | 166-651 |
| Cow position: | chr21:997371-996882 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 175-649 |
| Cow position: | chr21:24085328-24084849 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 15 |
| Conread position: | 204-651 |
| Cow position: | chr21:6414523-6414068 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 242-559 |
| Cow position: | chr21:5839647-5839340 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 123 |
| Conread position: | 256-650 |
| Cow position: | chr21:18816698-18816304 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 67 |
| Conread position: | 267-629 |
| Cow position: | chr21:33710713-33711083 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 297-432 |
| Cow position: | chr21:11061632-11061772 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 95 |
| Conread position: | 331-651 |
| Cow position: | chr21:7591301-7591612 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 42 |
| Conread position: | 332-651 |
| Cow position: | chr21:44764319-44763998 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 334-498 |
| Cow position: | chr21:28736823-28736991 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 21, 59 |
| Conread position: | 373-651 |
| Cow position: | chr21:27150154-27150440 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 195 |
Show alignments to all cow chromosomes.