Cow genome map
| Conread name: | Lym2-sn47_E05.f |
| Conread position: | 14-651 |
| Cow position: | chr24:9090828-9090190 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 68 |
| Conread position: | 16-353 |
| Cow position: | chr24:29305088-29304746 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 16-400 |
| Cow position: | chr24:9187517-9187127 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 380 |
| Conread position: | 16-486 |
| Cow position: | chr24:6435708-6436189 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 16-505 |
| Cow position: | chr24:12699592-12699099 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 91 |
| Conread position: | 16-567 |
| Cow position: | chr24:5992000-5991439 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 217 |
| Conread position: | 16-568 |
| Cow position: | chr24:44018733-44019296 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 16-626 |
| Cow position: | chr24:17300676-17300067 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 154 |
| Conread position: | 16-631 |
| Cow position: | chr24:6023880-6023238 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 203 |
| Conread position: | 16-648 |
| Cow position: | chr24:29188518-29189153 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 268 |
| Conread position: | 16-649 |
| Cow position: | chr24:6337614-6338250 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 259 |
| Conread position: | 16-650 |
| Cow position: | chr24:33934614-33935257 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 221 |
| Conread position: | 16-651 |
| Cow position: | chr24:7062767-7063410 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 380 |
| Conread position: | 16-651 |
| Cow position: | chr24:13044416-13043757 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 115 |
| Conread position: | 16-651 |
| Cow position: | chr24:13189412-13190034 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 102 |
| Conread position: | 16-651 |
| Cow position: | chr24:17321939-17322546 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 45 |
| Conread position: | 16-651 |
| Cow position: | chr24:23504637-23503989 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 17-651 |
| Cow position: | chr24:35869334-35868719 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 98 |
| Conread position: | 18-197 |
| Cow position: | chr24:30430842-30431023 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 98, 165 |
| Conread position: | 18-636 |
| Cow position: | chr24:12238519-12239145 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 82 |
| Conread position: | 18-645 |
| Cow position: | chr24:14871093-14870460 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 66 |
| Conread position: | 19-194 |
| Cow position: | chr24:16083798-16083620 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 19-519 |
| Cow position: | chr24:6407263-6407771 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 311 |
| Conread position: | 19-651 |
| Cow position: | chr24:12150083-12149419 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 315 |
| Conread position: | 19-651 |
| Cow position: | chr24:13233486-13234118 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 378 |
| Conread position: | 19-651 |
| Cow position: | chr24:19702726-19703357 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 153 |
| Conread position: | 23-357 |
| Cow position: | chr24:12163177-12163505 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 250 |
| Conread position: | 24-467 |
| Cow position: | chr24:11152004-11151550 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 25-278 |
| Cow position: | chr24:36558531-36558289 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 94, 125 |
| Conread position: | 25-448 |
| Cow position: | chr24:14389299-14388877 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 200 |
| Conread position: | 25-472 |
| Cow position: | chr24:6142321-6142761 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 26 |
| Conread position: | 25-643 |
| Cow position: | chr24:16561090-16560448 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 381 |
| Conread position: | 25-647 |
| Cow position: | chr24:14383399-14382763 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 123 |
| Conread position: | 25-651 |
| Cow position: | chr24:147375-146739 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 121 |
| Conread position: | 25-651 |
| Cow position: | chr24:12087443-12088070 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 137 |
| Conread position: | 30-260 |
| Cow position: | chr24:6668578-6668352 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 86, 68 |
| Conread position: | 32-637 |
| Cow position: | chr24:13179774-13179165 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 51 |
| Conread position: | 48-618 |
| Cow position: | chr24:4044994-4044422 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 360 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 67, 97 |
| Conread position: | 53-420 |
| Cow position: | chr24:14277957-14277593 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 66 |
| Conread position: | 53-645 |
| Cow position: | chr24:9545317-9545920 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 102 |
| Conread position: | 60-387 |
| Cow position: | chr24:25437564-25437881 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 112 |
| Conread position: | 69-631 |
| Cow position: | chr24:12205053-12204494 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 50 |
| Conread position: | 90-651 |
| Cow position: | chr24:12127814-12127240 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 146 |
| Conread position: | 93-357 |
| Cow position: | chr24:16875905-16875635 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 8, 194 |
| Conread position: | 93-612 |
| Cow position: | chr24:6324049-6323519 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 130 |
| Conread position: | 94-349 |
| Cow position: | chr24:5893626-5893372 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 59 |
| Conread position: | 106-559 |
| Cow position: | chr24:310185-310646 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 54 |
| Conread position: | 118-552 |
| Cow position: | chr24:8606147-8606592 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 101 |
| Conread position: | 149-651 |
| Cow position: | chr24:12334366-12333868 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 8 |
| Conread position: | 164-467 |
| Cow position: | chr24:16083405-16083094 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 169-387 |
| Cow position: | chr24:40468433-40468650 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 162 |
| Conread position: | 177-561 |
| Cow position: | chr24:42584363-42583991 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 120, 37 |
| Conread position: | 193-651 |
| Cow position: | chr24:14755403-14755869 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 201-651 |
| Cow position: | chr24:22972475-22972935 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 248-584 |
| Cow position: | chr24:12569487-12569821 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 263-651 |
| Cow position: | chr24:41003961-41004359 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 238 |
| Conread position: | 265-651 |
| Cow position: | chr24:6963274-6962880 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 266-651 |
| Cow position: | chr24:36558073-36557700 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 128 |
Show alignments to all cow chromosomes.