Cow genome map

Conread name: Lym2-sn47_E05.f

Conread position: 11-651
Cow position: chr28:783840-784486 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 159

Conread position: 14-651
Cow position: chr28:32791194-32790569 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 12

Conread position: 16-180
Cow position: chr28:24883797-24883630 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 100, 0

Conread position: 16-498
Cow position: chr28:18146548-18146068 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 16

Conread position: 16-552
Cow position: chr28:5803227-5803749 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 104

Conread position: 16-568
Cow position: chr28:21566648-21567189 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 86

Conread position: 16-637
Cow position: chr28:1386211-1385593 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 52

Conread position: 16-647
Cow position: chr28:7741630-7742259 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 208

Conread position: 16-647
Cow position: chr28:22042099-22041459 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 210

Conread position: 16-648
Cow position: chr28:18519262-18518620 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 10

Conread position: 16-649
Cow position: chr28:8380252-8380865 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 77

Conread position: 16-651
Cow position: chr28:484407-483764 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 183

Conread position: 16-651
Cow position: chr28:1166691-1166064 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 67

Conread position: 16-651
Cow position: chr28:1954542-1955185 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 320

Conread position: 16-651
Cow position: chr28:5938673-5939318 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 10

Conread position: 16-651
Cow position: chr28:7827175-7827808 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 16

Conread position: 16-651
Cow position: chr28:14704199-14703553 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 176

Conread position: 16-651
Cow position: chr28:15034935-15034281 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 235

Conread position: 16-651
Cow position: chr28:15587274-15587894 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 130

Conread position: 18-491
Cow position: chr28:9179803-9180279 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 342

Conread position: 18-651
Cow position: chr28:24590047-24590686 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 101

Conread position: 18-651
Cow position: chr28:26425064-26424431 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 145

Conread position: 19-647
Cow position: chr28:21360683-21361318 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 130

Conread position: 19-649
Cow position: chr28:5765923-5766559 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 79

Conread position: 19-651
Cow position: chr28:6778750-6778111 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 229

Conread position: 23-171
Cow position: chr28:698440-698591 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 96, 111

Conread position: 23-645
Cow position: chr28:25760699-25761287 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 15

Conread position: 23-651
Cow position: chr28:17381663-17381042 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 50

Conread position: 24-651
Cow position: chr28:24668806-24669427 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 59

Conread position: 25-592
Cow position: chr28:13461173-13461739 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 266

Conread position: 25-645
Cow position: chr28:22259954-22259331 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 123

Conread position: 25-651
Cow position: chr28:3191058-3190422 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 137

Conread position: 25-651
Cow position: chr28:5750510-5749873 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 262

Conread position: 25-651
Cow position: chr28:7003194-7003830 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 19

Conread position: 25-651
Cow position: chr28:12409038-12408393 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 41

Conread position: 25-651
Cow position: chr28:17389598-17390233 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 92

Conread position: 25-651
Cow position: chr28:17666109-17665497 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 123

Conread position: 25-651
Cow position: chr28:22232081-22231462 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 198

Conread position: 25-651
Cow position: chr28:29821193-29821818 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 57

Conread position: 26-648
Cow position: chr28:2085657-2086292 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 115

Conread position: 28-507
Cow position: chr28:5112943-5112438 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 30-645
Cow position: chr28:1216634-1216013 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 53

Conread position: 50-535
Cow position: chr28:13603979-13604470 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 51

Conread position: 53-376
Cow position: chr28:15684683-15684999 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 106

Conread position: 53-650
Cow position: chr28:8719735-8719132 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 98

Conread position: 59-386
Cow position: chr28:2117209-2117538 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 102

Conread position: 65-651
Cow position: chr28:10580644-10580041 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 170

Conread position: 108-651
Cow position: chr28:1459371-1459925 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 117-631
Cow position: chr28:6537522-6537000 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 0

Conread position: 128-420
Cow position: chr28:14752085-14752384 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 213
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 168, 112

Conread position: 140-447
Cow position: chr28:24884228-24884531 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 218
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 158, 49

Conread position: 149-651
Cow position: chr28:10470987-10471482 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 20

Conread position: 149-651
Cow position: chr28:10615670-10615177 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 28

Conread position: 169-637
Cow position: chr28:33637882-33638362 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 0

Conread position: 175-650
Cow position: chr28:698629-699105 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 22

Conread position: 186-395
Cow position: chr28:10067973-10067769 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 168
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 89, 147

Conread position: 186-651
Cow position: chr28:24558963-24559430 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 13

Conread position: 227-651
Cow position: chr28:11504829-11504411 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 14

Conread position: 271-651
Cow position: chr28:5814675-5815035 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 52

Conread position: 281-651
Cow position: chr28:9288402-9288777 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 96

Conread position: 311-651
Cow position: chr28:32304754-32304419 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 223
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 46, 27

Conread position: 312-651
Cow position: chr28:7059180-7058838 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 49

Conread position: 314-651
Cow position: chr28:10496004-10495671 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 16

Conread position: 454-651
Cow position: chr28:18302277-18302076 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 73, 0

Show alignments to all cow chromosomes.