Cow genome map
Conread name: | Lym2-sn47_E05.f |
Conread position: | 11-651 |
Cow position: | chr28:783840-784486 (view UCSC Genome Browser custom track) |
Alignm length: | 655 |
Alignm identity: | 491 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 105, 159 |
Conread position: | 14-651 |
Cow position: | chr28:32791194-32790569 (view UCSC Genome Browser custom track) |
Alignm length: | 646 |
Alignm identity: | 473 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 12 |
Conread position: | 16-180 |
Cow position: | chr28:24883797-24883630 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 121 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 100, 0 |
Conread position: | 16-498 |
Cow position: | chr28:18146548-18146068 (view UCSC Genome Browser custom track) |
Alignm length: | 491 |
Alignm identity: | 342 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 16 |
Conread position: | 16-552 |
Cow position: | chr28:5803227-5803749 (view UCSC Genome Browser custom track) |
Alignm length: | 547 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 104 |
Conread position: | 16-568 |
Cow position: | chr28:21566648-21567189 (view UCSC Genome Browser custom track) |
Alignm length: | 557 |
Alignm identity: | 392 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 280, 86 |
Conread position: | 16-637 |
Cow position: | chr28:1386211-1385593 (view UCSC Genome Browser custom track) |
Alignm length: | 637 |
Alignm identity: | 476 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 52 |
Conread position: | 16-647 |
Cow position: | chr28:7741630-7742259 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 485 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 208 |
Conread position: | 16-647 |
Cow position: | chr28:22042099-22041459 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 210 |
Conread position: | 16-648 |
Cow position: | chr28:18519262-18518620 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 486 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 10 |
Conread position: | 16-649 |
Cow position: | chr28:8380252-8380865 (view UCSC Genome Browser custom track) |
Alignm length: | 642 |
Alignm identity: | 474 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 281, 77 |
Conread position: | 16-651 |
Cow position: | chr28:484407-483764 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 479 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 183 |
Conread position: | 16-651 |
Cow position: | chr28:1166691-1166064 (view UCSC Genome Browser custom track) |
Alignm length: | 646 |
Alignm identity: | 479 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 67 |
Conread position: | 16-651 |
Cow position: | chr28:1954542-1955185 (view UCSC Genome Browser custom track) |
Alignm length: | 649 |
Alignm identity: | 472 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 110, 320 |
Conread position: | 16-651 |
Cow position: | chr28:5938673-5939318 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 487 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 10 |
Conread position: | 16-651 |
Cow position: | chr28:7827175-7827808 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 459 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 16 |
Conread position: | 16-651 |
Cow position: | chr28:14704199-14703553 (view UCSC Genome Browser custom track) |
Alignm length: | 650 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 176 |
Conread position: | 16-651 |
Cow position: | chr28:15034935-15034281 (view UCSC Genome Browser custom track) |
Alignm length: | 657 |
Alignm identity: | 490 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 235 |
Conread position: | 16-651 |
Cow position: | chr28:15587274-15587894 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 420 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 130 |
Conread position: | 18-491 |
Cow position: | chr28:9179803-9180279 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 355 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 342 |
Conread position: | 18-651 |
Cow position: | chr28:24590047-24590686 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 476 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 280, 101 |
Conread position: | 18-651 |
Cow position: | chr28:26425064-26424431 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 483 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 145 |
Conread position: | 19-647 |
Cow position: | chr28:21360683-21361318 (view UCSC Genome Browser custom track) |
Alignm length: | 646 |
Alignm identity: | 493 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 130 |
Conread position: | 19-649 |
Cow position: | chr28:5765923-5766559 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 473 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 79 |
Conread position: | 19-651 |
Cow position: | chr28:6778750-6778111 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 464 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 229 |
Conread position: | 23-171 |
Cow position: | chr28:698440-698591 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 114 |
Alignm E-value: | 8e-23 |
Alignm gaps (pig, cow): | 96, 111 |
Conread position: | 23-645 |
Cow position: | chr28:25760699-25761287 (view UCSC Genome Browser custom track) |
Alignm length: | 632 |
Alignm identity: | 434 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 15 |
Conread position: | 23-651 |
Cow position: | chr28:17381663-17381042 (view UCSC Genome Browser custom track) |
Alignm length: | 639 |
Alignm identity: | 447 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 50 |
Conread position: | 24-651 |
Cow position: | chr28:24668806-24669427 (view UCSC Genome Browser custom track) |
Alignm length: | 637 |
Alignm identity: | 477 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 59 |
Conread position: | 25-592 |
Cow position: | chr28:13461173-13461739 (view UCSC Genome Browser custom track) |
Alignm length: | 578 |
Alignm identity: | 430 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 266 |
Conread position: | 25-645 |
Cow position: | chr28:22259954-22259331 (view UCSC Genome Browser custom track) |
Alignm length: | 632 |
Alignm identity: | 476 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 123 |
Conread position: | 25-651 |
Cow position: | chr28:3191058-3190422 (view UCSC Genome Browser custom track) |
Alignm length: | 638 |
Alignm identity: | 489 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 137 |
Conread position: | 25-651 |
Cow position: | chr28:5750510-5749873 (view UCSC Genome Browser custom track) |
Alignm length: | 642 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 262 |
Conread position: | 25-651 |
Cow position: | chr28:7003194-7003830 (view UCSC Genome Browser custom track) |
Alignm length: | 642 |
Alignm identity: | 472 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 19 |
Conread position: | 25-651 |
Cow position: | chr28:12409038-12408393 (view UCSC Genome Browser custom track) |
Alignm length: | 649 |
Alignm identity: | 483 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 41 |
Conread position: | 25-651 |
Cow position: | chr28:17389598-17390233 (view UCSC Genome Browser custom track) |
Alignm length: | 638 |
Alignm identity: | 495 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 92 |
Conread position: | 25-651 |
Cow position: | chr28:17666109-17665497 (view UCSC Genome Browser custom track) |
Alignm length: | 638 |
Alignm identity: | 477 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 123 |
Conread position: | 25-651 |
Cow position: | chr28:22232081-22231462 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 463 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 198 |
Conread position: | 25-651 |
Cow position: | chr28:29821193-29821818 (view UCSC Genome Browser custom track) |
Alignm length: | 634 |
Alignm identity: | 473 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 57 |
Conread position: | 26-648 |
Cow position: | chr28:2085657-2086292 (view UCSC Genome Browser custom track) |
Alignm length: | 638 |
Alignm identity: | 484 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 115 |
Conread position: | 28-507 |
Cow position: | chr28:5112943-5112438 (view UCSC Genome Browser custom track) |
Alignm length: | 506 |
Alignm identity: | 342 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 0 |
Conread position: | 30-645 |
Cow position: | chr28:1216634-1216013 (view UCSC Genome Browser custom track) |
Alignm length: | 633 |
Alignm identity: | 464 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 89, 53 |
Conread position: | 50-535 |
Cow position: | chr28:13603979-13604470 (view UCSC Genome Browser custom track) |
Alignm length: | 498 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 51 |
Conread position: | 53-376 |
Cow position: | chr28:15684683-15684999 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 106 |
Conread position: | 53-650 |
Cow position: | chr28:8719735-8719132 (view UCSC Genome Browser custom track) |
Alignm length: | 614 |
Alignm identity: | 458 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 98 |
Conread position: | 59-386 |
Cow position: | chr28:2117209-2117538 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 102 |
Conread position: | 65-651 |
Cow position: | chr28:10580644-10580041 (view UCSC Genome Browser custom track) |
Alignm length: | 610 |
Alignm identity: | 447 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 170 |
Conread position: | 108-651 |
Cow position: | chr28:1459371-1459925 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 415 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 0 |
Conread position: | 117-631 |
Cow position: | chr28:6537522-6537000 (view UCSC Genome Browser custom track) |
Alignm length: | 523 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 179, 0 |
Conread position: | 128-420 |
Cow position: | chr28:14752085-14752384 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 213 |
Alignm E-value: | 7.00649e-43 |
Alignm gaps (pig, cow): | 168, 112 |
Conread position: | 140-447 |
Cow position: | chr28:24884228-24884531 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 218 |
Alignm E-value: | 9e-35 |
Alignm gaps (pig, cow): | 158, 49 |
Conread position: | 149-651 |
Cow position: | chr28:10470987-10471482 (view UCSC Genome Browser custom track) |
Alignm length: | 521 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 20 |
Conread position: | 149-651 |
Cow position: | chr28:10615670-10615177 (view UCSC Genome Browser custom track) |
Alignm length: | 511 |
Alignm identity: | 345 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 28 |
Conread position: | 169-637 |
Cow position: | chr28:33637882-33638362 (view UCSC Genome Browser custom track) |
Alignm length: | 481 |
Alignm identity: | 366 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 0 |
Conread position: | 175-650 |
Cow position: | chr28:698629-699105 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 127, 22 |
Conread position: | 186-395 |
Cow position: | chr28:10067973-10067769 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 168 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 89, 147 |
Conread position: | 186-651 |
Cow position: | chr28:24558963-24559430 (view UCSC Genome Browser custom track) |
Alignm length: | 472 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 13 |
Conread position: | 227-651 |
Cow position: | chr28:11504829-11504411 (view UCSC Genome Browser custom track) |
Alignm length: | 431 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 167, 14 |
Conread position: | 271-651 |
Cow position: | chr28:5814675-5815035 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 52 |
Conread position: | 281-651 |
Cow position: | chr28:9288402-9288777 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 96 |
Conread position: | 311-651 |
Cow position: | chr28:32304754-32304419 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 223 |
Alignm E-value: | 5e-30 |
Alignm gaps (pig, cow): | 46, 27 |
Conread position: | 312-651 |
Cow position: | chr28:7059180-7058838 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 49 |
Conread position: | 314-651 |
Cow position: | chr28:10496004-10495671 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 16 |
Conread position: | 454-651 |
Cow position: | chr28:18302277-18302076 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 149 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 73, 0 |
Show alignments to all cow chromosomes.