Cow genome map
| Conread name: | Lym2-sn47_E05.f |
| Conread position: | 16-153 |
| Cow position: | chr29:16111539-16111679 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 16-289 |
| Cow position: | chr29:35297970-35298247 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 16-293 |
| Cow position: | chr29:35814822-35814543 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 267 |
| Conread position: | 16-317 |
| Cow position: | chr29:31096229-31095925 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 102, 227 |
| Conread position: | 16-400 |
| Cow position: | chr29:3328487-3328877 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 380 |
| Conread position: | 16-400 |
| Cow position: | chr29:42092913-42093303 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 380 |
| Conread position: | 16-436 |
| Cow position: | chr29:18855797-18855366 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 380 |
| Conread position: | 16-458 |
| Cow position: | chr29:42939044-42938601 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 228 |
| Conread position: | 16-513 |
| Cow position: | chr29:26461089-26460604 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 324 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 100, 138 |
| Conread position: | 16-524 |
| Cow position: | chr29:14084976-14084463 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 102 |
| Conread position: | 16-531 |
| Cow position: | chr29:15997500-15996978 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 16 |
| Conread position: | 16-606 |
| Cow position: | chr29:16345360-16345961 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 276 |
| Conread position: | 16-636 |
| Cow position: | chr29:32891943-32892549 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 159 |
| Conread position: | 16-648 |
| Cow position: | chr29:39078553-39077921 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 10 |
| Conread position: | 16-651 |
| Cow position: | chr29:609490-608854 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 50 |
| Conread position: | 16-651 |
| Cow position: | chr29:2840191-2839547 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 10 |
| Conread position: | 16-651 |
| Cow position: | chr29:5236170-5236818 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 67 |
| Conread position: | 16-651 |
| Cow position: | chr29:7845540-7846184 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 228 |
| Conread position: | 16-651 |
| Cow position: | chr29:13622704-13622064 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 77 |
| Conread position: | 16-651 |
| Cow position: | chr29:14587072-14587718 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 10 |
| Conread position: | 16-651 |
| Cow position: | chr29:26163682-26163042 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 10 |
| Conread position: | 16-651 |
| Cow position: | chr29:31182557-31183196 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 92 |
| Conread position: | 16-651 |
| Cow position: | chr29:32558604-32557957 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 16-651 |
| Cow position: | chr29:34798656-34798017 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 103 |
| Conread position: | 16-651 |
| Cow position: | chr29:38207522-38206870 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 238 |
| Conread position: | 18-631 |
| Cow position: | chr29:27979769-27979147 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 6 |
| Conread position: | 19-268 |
| Cow position: | chr29:9642636-9642384 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 19-651 |
| Cow position: | chr29:13583235-13583875 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 207 |
| Conread position: | 21-651 |
| Cow position: | chr29:47279-46667 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 11 |
| Conread position: | 23-264 |
| Cow position: | chr29:32804579-32804811 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 60, 41 |
| Conread position: | 23-441 |
| Cow position: | chr29:21425856-21425440 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 118 |
| Conread position: | 23-651 |
| Cow position: | chr29:5981549-5980920 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 63 |
| Conread position: | 24-651 |
| Cow position: | chr29:8664669-8665303 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 209 |
| Conread position: | 25-648 |
| Cow position: | chr29:32541257-32541885 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 259 |
| Conread position: | 25-649 |
| Cow position: | chr29:16023732-16024356 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 44 |
| Conread position: | 25-651 |
| Cow position: | chr29:19622120-19621473 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 302 |
| Conread position: | 25-651 |
| Cow position: | chr29:23977285-23977917 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 55 |
| Conread position: | 26-649 |
| Cow position: | chr29:14112705-14113331 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 106 |
| Conread position: | 27-606 |
| Cow position: | chr29:45460906-45461495 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 210 |
| Conread position: | 27-651 |
| Cow position: | chr29:19654791-19655412 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 118 |
| Conread position: | 27-651 |
| Cow position: | chr29:30259368-30258750 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 92 |
| Conread position: | 31-647 |
| Cow position: | chr29:3176253-3175665 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 65 |
| Conread position: | 33-648 |
| Cow position: | chr29:2691335-2691953 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 133 |
| Conread position: | 34-651 |
| Cow position: | chr29:6264829-6264205 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 85 |
| Conread position: | 38-174 |
| Cow position: | chr29:6009694-6009828 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 63-570 |
| Cow position: | chr29:19953826-19954333 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 169 |
| Conread position: | 63-651 |
| Cow position: | chr29:2101034-2101632 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 512 |
| Conread position: | 79-651 |
| Cow position: | chr29:40501787-40501216 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 84 |
| Conread position: | 93-651 |
| Cow position: | chr29:647052-647601 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 79 |
| Conread position: | 95-651 |
| Cow position: | chr29:21431625-21431061 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 530 |
| Conread position: | 97-651 |
| Cow position: | chr29:32287478-32288040 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 100-651 |
| Cow position: | chr29:13851652-13851084 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 423 |
| Conread position: | 100-651 |
| Cow position: | chr29:27180521-27179959 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 102-410 |
| Cow position: | chr29:6198519-6198202 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 102-651 |
| Cow position: | chr29:410012-409468 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 115-651 |
| Cow position: | chr29:10023082-10022538 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 120-490 |
| Cow position: | chr29:29503004-29502626 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 0 |
| Conread position: | 126-528 |
| Cow position: | chr29:27262454-27262041 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 154 |
| Conread position: | 140-651 |
| Cow position: | chr29:19888860-19889377 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 84 |
| Conread position: | 170-651 |
| Cow position: | chr29:35298218-35298704 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 80 |
| Conread position: | 179-651 |
| Cow position: | chr29:31547360-31546893 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 298 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 114, 86 |
| Conread position: | 193-651 |
| Cow position: | chr29:43324851-43325311 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 87 |
| Conread position: | 221-651 |
| Cow position: | chr29:19526930-19526492 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 171 |
| Conread position: | 224-651 |
| Cow position: | chr29:10822557-10822124 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 225-651 |
| Cow position: | chr29:7429765-7429326 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 106 |
| Conread position: | 256-650 |
| Cow position: | chr29:9641395-9640992 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 278-593 |
| Cow position: | chr29:801174-800851 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 19, 98 |
| Conread position: | 280-649 |
| Cow position: | chr29:13018113-13018482 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 130 |
| Conread position: | 337-651 |
| Cow position: | chr29:27812566-27812877 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 410-651 |
| Cow position: | chr29:17151800-17152045 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 138, 63 |
Show alignments to all cow chromosomes.