Cow genome map

Conread name: Lym2-sn47_E05.f

Conread position: 15-650
Cow position: chr4:6206473-6207110 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 137

Conread position: 16-206
Cow position: chr4:603887-604080 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 100, 0

Conread position: 16-206
Cow position: chr4:30472105-30472297 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 101, 151

Conread position: 16-249
Cow position: chr4:967205-966966 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 16, 0

Conread position: 16-257
Cow position: chr4:47253464-47253225 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 129, 102

Conread position: 16-322
Cow position: chr4:44924659-44924360 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 218
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 100, 40

Conread position: 16-447
Cow position: chr4:69521410-69521828 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 33

Conread position: 16-464
Cow position: chr4:31564431-31563957 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 16-464
Cow position: chr4:45106333-45106792 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 16-552
Cow position: chr4:50975501-50976019 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 58

Conread position: 16-648
Cow position: chr4:3126677-3127320 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 581

Conread position: 16-650
Cow position: chr4:57957869-57958463 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 79

Conread position: 16-651
Cow position: chr4:160035-160670 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 143

Conread position: 16-651
Cow position: chr4:530277-530931 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 144

Conread position: 16-651
Cow position: chr4:4416932-4417563 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 119

Conread position: 16-651
Cow position: chr4:5443959-5443312 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 16-651
Cow position: chr4:5881029-5881668 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 240

Conread position: 16-651
Cow position: chr4:6567259-6567892 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 103

Conread position: 16-651
Cow position: chr4:17092992-17092351 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 131

Conread position: 16-651
Cow position: chr4:17925092-17924448 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 10

Conread position: 16-651
Cow position: chr4:18337727-18338366 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 24

Conread position: 16-651
Cow position: chr4:18423650-18423009 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 345

Conread position: 16-651
Cow position: chr4:25598624-25597973 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 46

Conread position: 16-651
Cow position: chr4:32213037-32213685 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 223

Conread position: 16-651
Cow position: chr4:33071947-33071326 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 10

Conread position: 16-651
Cow position: chr4:36897249-36897886 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 21

Conread position: 16-651
Cow position: chr4:41955634-41956276 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 14

Conread position: 16-651
Cow position: chr4:41959769-41960412 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 16

Conread position: 16-651
Cow position: chr4:44780352-44779713 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 202

Conread position: 16-651
Cow position: chr4:57984860-57985504 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 59

Conread position: 18-649
Cow position: chr4:34178361-34177745 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 102

Conread position: 18-651
Cow position: chr4:99341-98700 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 100

Conread position: 18-651
Cow position: chr4:1929766-1929126 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 342

Conread position: 19-362
Cow position: chr4:41191727-41191380 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 213

Conread position: 19-560
Cow position: chr4:9847338-9846785 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 133

Conread position: 19-651
Cow position: chr4:14755790-14755162 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 30

Conread position: 23-384
Cow position: chr4:46665406-46665775 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 142

Conread position: 23-515
Cow position: chr4:51042414-51041915 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 91

Conread position: 23-650
Cow position: chr4:14819981-14819392 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 49

Conread position: 23-650
Cow position: chr4:60263280-60262659 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 177

Conread position: 24-219
Cow position: chr4:27300603-27300413 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 95, 122

Conread position: 24-310
Cow position: chr4:11110398-11110116 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 14

Conread position: 24-523
Cow position: chr4:54969612-54970091 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 39

Conread position: 25-647
Cow position: chr4:16639494-16640119 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 137

Conread position: 25-651
Cow position: chr4:19005427-19004818 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 58

Conread position: 25-651
Cow position: chr4:26876898-26876276 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 198

Conread position: 25-651
Cow position: chr4:42405490-42406125 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 15

Conread position: 25-651
Cow position: chr4:43318758-43318123 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 197

Conread position: 25-651
Cow position: chr4:67682075-67682711 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 141

Conread position: 26-179
Cow position: chr4:30795515-30795364 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 111
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 26-320
Cow position: chr4:9647257-9647539 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 197
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 140, 93

Conread position: 27-648
Cow position: chr4:44726471-44727088 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 156

Conread position: 60-620
Cow position: chr4:13958094-13958653 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 20

Conread position: 64-651
Cow position: chr4:9355298-9355892 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 250

Conread position: 86-355
Cow position: chr4:14138983-14139251 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 21

Conread position: 88-560
Cow position: chr4:20067775-20067305 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 29

Conread position: 125-639
Cow position: chr4:65665415-65664911 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 331

Conread position: 145-651
Cow position: chr4:6865503-6864995 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 135

Conread position: 149-651
Cow position: chr4:16060267-16060792 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 152-647
Cow position: chr4:1952562-1952059 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 107

Conread position: 152-651
Cow position: chr4:60627857-60627363 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 15

Conread position: 170-651
Cow position: chr4:14386845-14387335 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 0

Conread position: 170-651
Cow position: chr4:17502307-17501818 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 0

Conread position: 170-651
Cow position: chr4:27334955-27335452 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 382

Conread position: 173-651
Cow position: chr4:28653465-28652982 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 181-651
Cow position: chr4:37988371-37988849 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 53

Conread position: 185-651
Cow position: chr4:34221787-34222261 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 310
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 185, 105

Conread position: 193-651
Cow position: chr4:604677-605139 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 399

Conread position: 198-651
Cow position: chr4:20236345-20235885 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 424

Conread position: 205-651
Cow position: chr4:30472271-30472726 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 254-650
Cow position: chr4:41978288-41977873 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 277
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 13, 264

Conread position: 260-651
Cow position: chr4:28832835-28833227 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 12

Conread position: 272-649
Cow position: chr4:54152482-54152105 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 255
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 24, 56

Conread position: 277-651
Cow position: chr4:33022505-33022126 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 32

Conread position: 316-651
Cow position: chr4:11109897-11109561 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 256

Conread position: 342-651
Cow position: chr4:827405-827721 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 476-651
Cow position: chr4:65222422-65222247 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 493-649
Cow position: chr4:8670676-8670831 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 106, 0

Show alignments to all cow chromosomes.