Cow genome map
Conread name: | Lym2-sn47_E05.f |
Conread position: | 15-650 |
Cow position: | chr4:6206473-6207110 (view UCSC Genome Browser custom track) |
Alignm length: | 658 |
Alignm identity: | 440 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 137 |
Conread position: | 16-206 |
Cow position: | chr4:603887-604080 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 142 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 100, 0 |
Conread position: | 16-206 |
Cow position: | chr4:30472105-30472297 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 138 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 101, 151 |
Conread position: | 16-249 |
Cow position: | chr4:967205-966966 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 172 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 16-257 |
Cow position: | chr4:47253464-47253225 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 167 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 129, 102 |
Conread position: | 16-322 |
Cow position: | chr4:44924659-44924360 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 218 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 100, 40 |
Conread position: | 16-447 |
Cow position: | chr4:69521410-69521828 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 103, 33 |
Conread position: | 16-464 |
Cow position: | chr4:31564431-31563957 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 353 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 0 |
Conread position: | 16-464 |
Cow position: | chr4:45106333-45106792 (view UCSC Genome Browser custom track) |
Alignm length: | 460 |
Alignm identity: | 347 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 0 |
Conread position: | 16-552 |
Cow position: | chr4:50975501-50976019 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 357 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 58 |
Conread position: | 16-648 |
Cow position: | chr4:3126677-3127320 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 473 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 581 |
Conread position: | 16-650 |
Cow position: | chr4:57957869-57958463 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 448 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 202, 79 |
Conread position: | 16-651 |
Cow position: | chr4:160035-160670 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 477 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 143 |
Conread position: | 16-651 |
Cow position: | chr4:530277-530931 (view UCSC Genome Browser custom track) |
Alignm length: | 661 |
Alignm identity: | 475 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 144 |
Conread position: | 16-651 |
Cow position: | chr4:4416932-4417563 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 467 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 119 |
Conread position: | 16-651 |
Cow position: | chr4:5443959-5443312 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 479 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 0 |
Conread position: | 16-651 |
Cow position: | chr4:5881029-5881668 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 472 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 240 |
Conread position: | 16-651 |
Cow position: | chr4:6567259-6567892 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 471 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 282, 103 |
Conread position: | 16-651 |
Cow position: | chr4:17092992-17092351 (view UCSC Genome Browser custom track) |
Alignm length: | 646 |
Alignm identity: | 478 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 131 |
Conread position: | 16-651 |
Cow position: | chr4:17925092-17924448 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 482 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 10 |
Conread position: | 16-651 |
Cow position: | chr4:18337727-18338366 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 470 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 276, 24 |
Conread position: | 16-651 |
Cow position: | chr4:18423650-18423009 (view UCSC Genome Browser custom track) |
Alignm length: | 646 |
Alignm identity: | 476 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 345 |
Conread position: | 16-651 |
Cow position: | chr4:25598624-25597973 (view UCSC Genome Browser custom track) |
Alignm length: | 657 |
Alignm identity: | 486 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 46 |
Conread position: | 16-651 |
Cow position: | chr4:32213037-32213685 (view UCSC Genome Browser custom track) |
Alignm length: | 650 |
Alignm identity: | 475 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 223 |
Conread position: | 16-651 |
Cow position: | chr4:33071947-33071326 (view UCSC Genome Browser custom track) |
Alignm length: | 650 |
Alignm identity: | 477 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 10 |
Conread position: | 16-651 |
Cow position: | chr4:36897249-36897886 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 486 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 21 |
Conread position: | 16-651 |
Cow position: | chr4:41955634-41956276 (view UCSC Genome Browser custom track) |
Alignm length: | 646 |
Alignm identity: | 474 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 103, 14 |
Conread position: | 16-651 |
Cow position: | chr4:41959769-41960412 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 475 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 16 |
Conread position: | 16-651 |
Cow position: | chr4:44780352-44779713 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 469 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 202 |
Conread position: | 16-651 |
Cow position: | chr4:57984860-57985504 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 484 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 59 |
Conread position: | 18-649 |
Cow position: | chr4:34178361-34177745 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 477 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 102 |
Conread position: | 18-651 |
Cow position: | chr4:99341-98700 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 475 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 278, 100 |
Conread position: | 18-651 |
Cow position: | chr4:1929766-1929126 (view UCSC Genome Browser custom track) |
Alignm length: | 646 |
Alignm identity: | 470 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 98, 342 |
Conread position: | 19-362 |
Cow position: | chr4:41191727-41191380 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 213 |
Conread position: | 19-560 |
Cow position: | chr4:9847338-9846785 (view UCSC Genome Browser custom track) |
Alignm length: | 556 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 133 |
Conread position: | 19-651 |
Cow position: | chr4:14755790-14755162 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 463 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 30 |
Conread position: | 23-384 |
Cow position: | chr4:46665406-46665775 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 142 |
Conread position: | 23-515 |
Cow position: | chr4:51042414-51041915 (view UCSC Genome Browser custom track) |
Alignm length: | 508 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 109, 91 |
Conread position: | 23-650 |
Cow position: | chr4:14819981-14819392 (view UCSC Genome Browser custom track) |
Alignm length: | 641 |
Alignm identity: | 438 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 49 |
Conread position: | 23-650 |
Cow position: | chr4:60263280-60262659 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 474 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 177 |
Conread position: | 24-219 |
Cow position: | chr4:27300603-27300413 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 142 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 95, 122 |
Conread position: | 24-310 |
Cow position: | chr4:11110398-11110116 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 14 |
Conread position: | 24-523 |
Cow position: | chr4:54969612-54970091 (view UCSC Genome Browser custom track) |
Alignm length: | 507 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 39 |
Conread position: | 25-647 |
Cow position: | chr4:16639494-16640119 (view UCSC Genome Browser custom track) |
Alignm length: | 634 |
Alignm identity: | 479 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 137 |
Conread position: | 25-651 |
Cow position: | chr4:19005427-19004818 (view UCSC Genome Browser custom track) |
Alignm length: | 632 |
Alignm identity: | 477 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 272, 58 |
Conread position: | 25-651 |
Cow position: | chr4:26876898-26876276 (view UCSC Genome Browser custom track) |
Alignm length: | 637 |
Alignm identity: | 485 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 198 |
Conread position: | 25-651 |
Cow position: | chr4:42405490-42406125 (view UCSC Genome Browser custom track) |
Alignm length: | 642 |
Alignm identity: | 471 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 15 |
Conread position: | 25-651 |
Cow position: | chr4:43318758-43318123 (view UCSC Genome Browser custom track) |
Alignm length: | 639 |
Alignm identity: | 493 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 197 |
Conread position: | 25-651 |
Cow position: | chr4:67682075-67682711 (view UCSC Genome Browser custom track) |
Alignm length: | 640 |
Alignm identity: | 476 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 141 |
Conread position: | 26-179 |
Cow position: | chr4:30795515-30795364 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 111 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 74, 0 |
Conread position: | 26-320 |
Cow position: | chr4:9647257-9647539 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 197 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 140, 93 |
Conread position: | 27-648 |
Cow position: | chr4:44726471-44727088 (view UCSC Genome Browser custom track) |
Alignm length: | 634 |
Alignm identity: | 469 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 89, 156 |
Conread position: | 60-620 |
Cow position: | chr4:13958094-13958653 (view UCSC Genome Browser custom track) |
Alignm length: | 568 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 292, 20 |
Conread position: | 64-651 |
Cow position: | chr4:9355298-9355892 (view UCSC Genome Browser custom track) |
Alignm length: | 598 |
Alignm identity: | 436 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 250 |
Conread position: | 86-355 |
Cow position: | chr4:14138983-14139251 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 209 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 21 |
Conread position: | 88-560 |
Cow position: | chr4:20067775-20067305 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 349 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 29 |
Conread position: | 125-639 |
Cow position: | chr4:65665415-65664911 (view UCSC Genome Browser custom track) |
Alignm length: | 523 |
Alignm identity: | 370 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 173, 331 |
Conread position: | 145-651 |
Cow position: | chr4:6865503-6864995 (view UCSC Genome Browser custom track) |
Alignm length: | 515 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 135 |
Conread position: | 149-651 |
Cow position: | chr4:16060267-16060792 (view UCSC Genome Browser custom track) |
Alignm length: | 526 |
Alignm identity: | 383 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 0 |
Conread position: | 152-647 |
Cow position: | chr4:1952562-1952059 (view UCSC Genome Browser custom track) |
Alignm length: | 508 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 107 |
Conread position: | 152-651 |
Cow position: | chr4:60627857-60627363 (view UCSC Genome Browser custom track) |
Alignm length: | 510 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 15 |
Conread position: | 170-651 |
Cow position: | chr4:14386845-14387335 (view UCSC Genome Browser custom track) |
Alignm length: | 491 |
Alignm identity: | 369 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 0 |
Conread position: | 170-651 |
Cow position: | chr4:17502307-17501818 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 0 |
Conread position: | 170-651 |
Cow position: | chr4:27334955-27335452 (view UCSC Genome Browser custom track) |
Alignm length: | 499 |
Alignm identity: | 366 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 382 |
Conread position: | 173-651 |
Cow position: | chr4:28653465-28652982 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 352 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 0 |
Conread position: | 181-651 |
Cow position: | chr4:37988371-37988849 (view UCSC Genome Browser custom track) |
Alignm length: | 494 |
Alignm identity: | 338 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 141, 53 |
Conread position: | 185-651 |
Cow position: | chr4:34221787-34222261 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 310 |
Alignm E-value: | 7e-37 |
Alignm gaps (pig, cow): | 185, 105 |
Conread position: | 193-651 |
Cow position: | chr4:604677-605139 (view UCSC Genome Browser custom track) |
Alignm length: | 467 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 105, 399 |
Conread position: | 198-651 |
Cow position: | chr4:20236345-20235885 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 341 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 152, 424 |
Conread position: | 205-651 |
Cow position: | chr4:30472271-30472726 (view UCSC Genome Browser custom track) |
Alignm length: | 456 |
Alignm identity: | 342 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 254-650 |
Cow position: | chr4:41978288-41977873 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 277 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 13, 264 |
Conread position: | 260-651 |
Cow position: | chr4:28832835-28833227 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 12 |
Conread position: | 272-649 |
Cow position: | chr4:54152482-54152105 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 255 |
Alignm E-value: | 7e-26 |
Alignm gaps (pig, cow): | 24, 56 |
Conread position: | 277-651 |
Cow position: | chr4:33022505-33022126 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 32 |
Conread position: | 316-651 |
Cow position: | chr4:11109897-11109561 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 300, 256 |
Conread position: | 342-651 |
Cow position: | chr4:827405-827721 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 230 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 0 |
Conread position: | 476-651 |
Cow position: | chr4:65222422-65222247 (view UCSC Genome Browser custom track) |
Alignm length: | 176 |
Alignm identity: | 129 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 493-649 |
Cow position: | chr4:8670676-8670831 (view UCSC Genome Browser custom track) |
Alignm length: | 157 |
Alignm identity: | 112 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 106, 0 |
Show alignments to all cow chromosomes.