Cow genome map
Conread name: | Lym2-sn47_E05.f |
Conread position: | 14-479 |
Cow position: | chr5:27908300-27907827 (view UCSC Genome Browser custom track) |
Alignm length: | 477 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 152 |
Conread position: | 14-647 |
Cow position: | chr5:10855848-10855206 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 478 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 105, 148 |
Conread position: | 15-278 |
Cow position: | chr5:41376936-41376669 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 195 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 101, 211 |
Conread position: | 15-651 |
Cow position: | chr5:50870587-50871223 (view UCSC Genome Browser custom track) |
Alignm length: | 646 |
Alignm identity: | 474 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 107 |
Conread position: | 16-116 |
Cow position: | chr5:24999019-24998919 (view UCSC Genome Browser custom track) |
Alignm length: | 101 |
Alignm identity: | 85 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 16-180 |
Cow position: | chr5:44463-44296 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 122 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 101, 0 |
Conread position: | 16-257 |
Cow position: | chr5:307356-307115 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 175 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 100, 189 |
Conread position: | 16-270 |
Cow position: | chr5:46629208-46628961 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 191 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 97, 117 |
Conread position: | 16-348 |
Cow position: | chr5:20311381-20311050 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 86 |
Conread position: | 16-379 |
Cow position: | chr5:42505975-42506345 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 0 |
Conread position: | 16-420 |
Cow position: | chr5:34697573-34697982 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 10 |
Conread position: | 16-522 |
Cow position: | chr5:29767098-29767602 (view UCSC Genome Browser custom track) |
Alignm length: | 517 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 47 |
Conread position: | 16-555 |
Cow position: | chr5:46808282-46808823 (view UCSC Genome Browser custom track) |
Alignm length: | 549 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 268 |
Conread position: | 16-560 |
Cow position: | chr5:23669158-23668608 (view UCSC Genome Browser custom track) |
Alignm length: | 565 |
Alignm identity: | 393 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 56 |
Conread position: | 16-565 |
Cow position: | chr5:23686922-23686391 (view UCSC Genome Browser custom track) |
Alignm length: | 559 |
Alignm identity: | 398 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 103, 204 |
Conread position: | 16-626 |
Cow position: | chr5:18664754-18665354 (view UCSC Genome Browser custom track) |
Alignm length: | 619 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 203 |
Conread position: | 16-626 |
Cow position: | chr5:35301069-35301689 (view UCSC Genome Browser custom track) |
Alignm length: | 622 |
Alignm identity: | 467 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 217 |
Conread position: | 16-631 |
Cow position: | chr5:46645911-46646572 (view UCSC Genome Browser custom track) |
Alignm length: | 665 |
Alignm identity: | 460 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 10 |
Conread position: | 16-648 |
Cow position: | chr5:18273732-18274360 (view UCSC Genome Browser custom track) |
Alignm length: | 641 |
Alignm identity: | 458 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 222 |
Conread position: | 16-649 |
Cow position: | chr5:47830107-47829461 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 474 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 310 |
Conread position: | 16-651 |
Cow position: | chr5:988091-987452 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 467 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 282, 91 |
Conread position: | 16-651 |
Cow position: | chr5:3503137-3502490 (view UCSC Genome Browser custom track) |
Alignm length: | 649 |
Alignm identity: | 489 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 103, 10 |
Conread position: | 16-651 |
Cow position: | chr5:3965417-3966061 (view UCSC Genome Browser custom track) |
Alignm length: | 658 |
Alignm identity: | 473 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 142 |
Conread position: | 16-651 |
Cow position: | chr5:4018224-4017598 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 461 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 282, 101 |
Conread position: | 16-651 |
Cow position: | chr5:4386212-4386838 (view UCSC Genome Browser custom track) |
Alignm length: | 646 |
Alignm identity: | 479 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 10 |
Conread position: | 16-651 |
Cow position: | chr5:4757206-4756567 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 461 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 176 |
Conread position: | 16-651 |
Cow position: | chr5:5104193-5104830 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 458 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 179 |
Conread position: | 16-651 |
Cow position: | chr5:10775298-10774647 (view UCSC Genome Browser custom track) |
Alignm length: | 653 |
Alignm identity: | 477 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 32 |
Conread position: | 16-651 |
Cow position: | chr5:10813780-10813134 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 484 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 0 |
Conread position: | 16-651 |
Cow position: | chr5:10842414-10841764 (view UCSC Genome Browser custom track) |
Alignm length: | 653 |
Alignm identity: | 471 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 50 |
Conread position: | 16-651 |
Cow position: | chr5:12731739-12731099 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 142 |
Conread position: | 16-651 |
Cow position: | chr5:18121512-18120866 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 475 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 0 |
Conread position: | 16-651 |
Cow position: | chr5:23959358-23958714 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 475 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 103, 92 |
Conread position: | 16-651 |
Cow position: | chr5:26078222-26077578 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 468 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 379 |
Conread position: | 16-651 |
Cow position: | chr5:32773736-32774381 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 477 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 37 |
Conread position: | 16-651 |
Cow position: | chr5:45701285-45701933 (view UCSC Genome Browser custom track) |
Alignm length: | 654 |
Alignm identity: | 490 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 60 |
Conread position: | 16-651 |
Cow position: | chr5:46004885-46004261 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 458 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 76 |
Conread position: | 16-651 |
Cow position: | chr5:46777364-46778009 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 478 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 223 |
Conread position: | 16-651 |
Cow position: | chr5:48807768-48807116 (view UCSC Genome Browser custom track) |
Alignm length: | 655 |
Alignm identity: | 490 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 248 |
Conread position: | 16-651 |
Cow position: | chr5:59061607-59062252 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 470 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 317 |
Conread position: | 18-607 |
Cow position: | chr5:29434745-29434191 (view UCSC Genome Browser custom track) |
Alignm length: | 594 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 177 |
Conread position: | 18-645 |
Cow position: | chr5:7811280-7810640 (view UCSC Genome Browser custom track) |
Alignm length: | 651 |
Alignm identity: | 433 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 35 |
Conread position: | 18-648 |
Cow position: | chr5:30580313-30580948 (view UCSC Genome Browser custom track) |
Alignm length: | 649 |
Alignm identity: | 470 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 98, 8 |
Conread position: | 18-651 |
Cow position: | chr5:58196988-58197632 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 434 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 215 |
Conread position: | 19-645 |
Cow position: | chr5:31707536-31708173 (view UCSC Genome Browser custom track) |
Alignm length: | 638 |
Alignm identity: | 465 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 98, 0 |
Conread position: | 19-651 |
Cow position: | chr5:26183814-26184473 (view UCSC Genome Browser custom track) |
Alignm length: | 667 |
Alignm identity: | 485 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 34 |
Conread position: | 19-651 |
Cow position: | chr5:46664991-46665613 (view UCSC Genome Browser custom track) |
Alignm length: | 655 |
Alignm identity: | 443 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 47 |
Conread position: | 23-552 |
Cow position: | chr5:24151757-24152285 (view UCSC Genome Browser custom track) |
Alignm length: | 538 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 161, 91 |
Conread position: | 23-565 |
Cow position: | chr5:41960759-41960227 (view UCSC Genome Browser custom track) |
Alignm length: | 554 |
Alignm identity: | 428 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 47 |
Conread position: | 23-649 |
Cow position: | chr5:40923662-40923062 (view UCSC Genome Browser custom track) |
Alignm length: | 637 |
Alignm identity: | 458 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 139 |
Conread position: | 23-650 |
Cow position: | chr5:41527818-41527187 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 489 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 262 |
Conread position: | 25-428 |
Cow position: | chr5:54791653-54791240 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 22 |
Conread position: | 25-560 |
Cow position: | chr5:14784387-14783845 (view UCSC Genome Browser custom track) |
Alignm length: | 554 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 97 |
Conread position: | 25-570 |
Cow position: | chr5:59283296-59283851 (view UCSC Genome Browser custom track) |
Alignm length: | 557 |
Alignm identity: | 423 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 135 |
Conread position: | 25-647 |
Cow position: | chr5:24099645-24100261 (view UCSC Genome Browser custom track) |
Alignm length: | 631 |
Alignm identity: | 478 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 142 |
Conread position: | 25-648 |
Cow position: | chr5:49757694-49757097 (view UCSC Genome Browser custom track) |
Alignm length: | 632 |
Alignm identity: | 421 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 273, 53 |
Conread position: | 25-649 |
Cow position: | chr5:37733326-37733967 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 476 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 137 |
Conread position: | 25-650 |
Cow position: | chr5:31100442-31099824 (view UCSC Genome Browser custom track) |
Alignm length: | 636 |
Alignm identity: | 477 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 43 |
Conread position: | 25-651 |
Cow position: | chr5:18560426-18559794 (view UCSC Genome Browser custom track) |
Alignm length: | 642 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 57 |
Conread position: | 26-486 |
Cow position: | chr5:32951882-32952345 (view UCSC Genome Browser custom track) |
Alignm length: | 474 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 134 |
Conread position: | 26-606 |
Cow position: | chr5:40789050-40789629 (view UCSC Genome Browser custom track) |
Alignm length: | 598 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 183, 81 |
Conread position: | 27-489 |
Cow position: | chr5:32281784-32281325 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 113 |
Conread position: | 27-584 |
Cow position: | chr5:18885552-18884982 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 392 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 92 |
Conread position: | 33-651 |
Cow position: | chr5:7143059-7142457 (view UCSC Genome Browser custom track) |
Alignm length: | 627 |
Alignm identity: | 450 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 263, 42 |
Conread position: | 76-651 |
Cow position: | chr5:24295654-24296217 (view UCSC Genome Browser custom track) |
Alignm length: | 580 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 221, 43 |
Conread position: | 86-392 |
Cow position: | chr5:55653804-55653492 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 173 |
Conread position: | 107-651 |
Cow position: | chr5:53945905-53946444 (view UCSC Genome Browser custom track) |
Alignm length: | 559 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 44 |
Conread position: | 118-651 |
Cow position: | chr5:34189991-34190538 (view UCSC Genome Browser custom track) |
Alignm length: | 553 |
Alignm identity: | 422 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 145, 135 |
Conread position: | 126-651 |
Cow position: | chr5:6587501-6586972 (view UCSC Genome Browser custom track) |
Alignm length: | 535 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 170, 147 |
Conread position: | 126-651 |
Cow position: | chr5:28242127-28242627 (view UCSC Genome Browser custom track) |
Alignm length: | 530 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 43 |
Conread position: | 152-530 |
Cow position: | chr5:28014146-28014524 (view UCSC Genome Browser custom track) |
Alignm length: | 386 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 12 |
Conread position: | 153-651 |
Cow position: | chr5:10919950-10920451 (view UCSC Genome Browser custom track) |
Alignm length: | 506 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 115 |
Conread position: | 193-651 |
Cow position: | chr5:49223338-49222874 (view UCSC Genome Browser custom track) |
Alignm length: | 472 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 105, 87 |
Conread position: | 223-651 |
Cow position: | chr5:76096232-76096667 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 160 |
Conread position: | 242-648 |
Cow position: | chr5:27197808-27198221 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 311 |
Conread position: | 251-555 |
Cow position: | chr5:2459191-2459501 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 223 |
Conread position: | 262-631 |
Cow position: | chr5:41376635-41376258 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 0 |
Conread position: | 263-651 |
Cow position: | chr5:4684584-4684189 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 131 |
Conread position: | 266-420 |
Cow position: | chr5:57000548-57000699 (view UCSC Genome Browser custom track) |
Alignm length: | 156 |
Alignm identity: | 122 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 84, 95 |
Conread position: | 288-651 |
Cow position: | chr5:40131358-40130986 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 0 |
Conread position: | 292-651 |
Cow position: | chr5:307163-306798 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 101 |
Conread position: | 295-651 |
Cow position: | chr5:23831068-23830711 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 179 |
Conread position: | 301-651 |
Cow position: | chr5:40758185-40758536 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 60 |
Conread position: | 303-523 |
Cow position: | chr5:7227121-7227336 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 164 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 47, 89 |
Conread position: | 304-651 |
Cow position: | chr5:31122325-31121971 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 19 |
Conread position: | 309-604 |
Cow position: | chr5:51744549-51744843 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 53 |
Conread position: | 332-651 |
Cow position: | chr5:37378416-37378742 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 61 |
Conread position: | 490-651 |
Cow position: | chr5:41066051-41065890 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 117 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.