Cow genome map

Conread name: Lym2-sn47_E05.f

Conread position: 14-479
Cow position: chr5:27908300-27907827 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 152

Conread position: 14-647
Cow position: chr5:10855848-10855206 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 148

Conread position: 15-278
Cow position: chr5:41376936-41376669 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 195
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 101, 211

Conread position: 15-651
Cow position: chr5:50870587-50871223 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 107

Conread position: 16-116
Cow position: chr5:24999019-24998919 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 16-180
Cow position: chr5:44463-44296 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 101, 0

Conread position: 16-257
Cow position: chr5:307356-307115 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 175
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 100, 189

Conread position: 16-270
Cow position: chr5:46629208-46628961 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 191
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 97, 117

Conread position: 16-348
Cow position: chr5:20311381-20311050 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 86

Conread position: 16-379
Cow position: chr5:42505975-42506345 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 16-420
Cow position: chr5:34697573-34697982 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 10

Conread position: 16-522
Cow position: chr5:29767098-29767602 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 47

Conread position: 16-555
Cow position: chr5:46808282-46808823 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 268

Conread position: 16-560
Cow position: chr5:23669158-23668608 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 56

Conread position: 16-565
Cow position: chr5:23686922-23686391 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 204

Conread position: 16-626
Cow position: chr5:18664754-18665354 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 203

Conread position: 16-626
Cow position: chr5:35301069-35301689 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 217

Conread position: 16-631
Cow position: chr5:46645911-46646572 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 10

Conread position: 16-648
Cow position: chr5:18273732-18274360 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 222

Conread position: 16-649
Cow position: chr5:47830107-47829461 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 310

Conread position: 16-651
Cow position: chr5:988091-987452 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 91

Conread position: 16-651
Cow position: chr5:3503137-3502490 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 10

Conread position: 16-651
Cow position: chr5:3965417-3966061 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 142

Conread position: 16-651
Cow position: chr5:4018224-4017598 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 101

Conread position: 16-651
Cow position: chr5:4386212-4386838 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 10

Conread position: 16-651
Cow position: chr5:4757206-4756567 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 176

Conread position: 16-651
Cow position: chr5:5104193-5104830 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 179

Conread position: 16-651
Cow position: chr5:10775298-10774647 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 32

Conread position: 16-651
Cow position: chr5:10813780-10813134 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 16-651
Cow position: chr5:10842414-10841764 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 50

Conread position: 16-651
Cow position: chr5:12731739-12731099 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 142

Conread position: 16-651
Cow position: chr5:18121512-18120866 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 16-651
Cow position: chr5:23959358-23958714 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 92

Conread position: 16-651
Cow position: chr5:26078222-26077578 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 379

Conread position: 16-651
Cow position: chr5:32773736-32774381 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 37

Conread position: 16-651
Cow position: chr5:45701285-45701933 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 60

Conread position: 16-651
Cow position: chr5:46004885-46004261 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 76

Conread position: 16-651
Cow position: chr5:46777364-46778009 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 223

Conread position: 16-651
Cow position: chr5:48807768-48807116 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 248

Conread position: 16-651
Cow position: chr5:59061607-59062252 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 317

Conread position: 18-607
Cow position: chr5:29434745-29434191 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 177

Conread position: 18-645
Cow position: chr5:7811280-7810640 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 35

Conread position: 18-648
Cow position: chr5:30580313-30580948 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 8

Conread position: 18-651
Cow position: chr5:58196988-58197632 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 215

Conread position: 19-645
Cow position: chr5:31707536-31708173 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 19-651
Cow position: chr5:26183814-26184473 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 34

Conread position: 19-651
Cow position: chr5:46664991-46665613 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 47

Conread position: 23-552
Cow position: chr5:24151757-24152285 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 91

Conread position: 23-565
Cow position: chr5:41960759-41960227 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 47

Conread position: 23-649
Cow position: chr5:40923662-40923062 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 139

Conread position: 23-650
Cow position: chr5:41527818-41527187 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 262

Conread position: 25-428
Cow position: chr5:54791653-54791240 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 22

Conread position: 25-560
Cow position: chr5:14784387-14783845 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 97

Conread position: 25-570
Cow position: chr5:59283296-59283851 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 135

Conread position: 25-647
Cow position: chr5:24099645-24100261 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 142

Conread position: 25-648
Cow position: chr5:49757694-49757097 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 53

Conread position: 25-649
Cow position: chr5:37733326-37733967 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 137

Conread position: 25-650
Cow position: chr5:31100442-31099824 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 43

Conread position: 25-651
Cow position: chr5:18560426-18559794 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 57

Conread position: 26-486
Cow position: chr5:32951882-32952345 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 134

Conread position: 26-606
Cow position: chr5:40789050-40789629 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 81

Conread position: 27-489
Cow position: chr5:32281784-32281325 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 113

Conread position: 27-584
Cow position: chr5:18885552-18884982 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 92

Conread position: 33-651
Cow position: chr5:7143059-7142457 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 42

Conread position: 76-651
Cow position: chr5:24295654-24296217 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 43

Conread position: 86-392
Cow position: chr5:55653804-55653492 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 173

Conread position: 107-651
Cow position: chr5:53945905-53946444 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 44

Conread position: 118-651
Cow position: chr5:34189991-34190538 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 135

Conread position: 126-651
Cow position: chr5:6587501-6586972 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 147

Conread position: 126-651
Cow position: chr5:28242127-28242627 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 43

Conread position: 152-530
Cow position: chr5:28014146-28014524 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 12

Conread position: 153-651
Cow position: chr5:10919950-10920451 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 115

Conread position: 193-651
Cow position: chr5:49223338-49222874 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 87

Conread position: 223-651
Cow position: chr5:76096232-76096667 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 160

Conread position: 242-648
Cow position: chr5:27197808-27198221 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 311

Conread position: 251-555
Cow position: chr5:2459191-2459501 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 223

Conread position: 262-631
Cow position: chr5:41376635-41376258 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 263-651
Cow position: chr5:4684584-4684189 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 131

Conread position: 266-420
Cow position: chr5:57000548-57000699 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 84, 95

Conread position: 288-651
Cow position: chr5:40131358-40130986 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 292-651
Cow position: chr5:307163-306798 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 101

Conread position: 295-651
Cow position: chr5:23831068-23830711 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 179

Conread position: 301-651
Cow position: chr5:40758185-40758536 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 60

Conread position: 303-523
Cow position: chr5:7227121-7227336 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 47, 89

Conread position: 304-651
Cow position: chr5:31122325-31121971 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 19

Conread position: 309-604
Cow position: chr5:51744549-51744843 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 53

Conread position: 332-651
Cow position: chr5:37378416-37378742 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 61

Conread position: 490-651
Cow position: chr5:41066051-41065890 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.