Cow genome map

Conread name: Lym2-sn47_E05.f

Conread position: 12-336
Cow position: chr7:34546560-34546878 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 29

Conread position: 14-348
Cow position: chr7:39554290-39553967 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 87

Conread position: 15-346
Cow position: chr7:57211351-57211686 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 128

Conread position: 16-295
Cow position: chr7:11447766-11448050 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 16-357
Cow position: chr7:66036376-66036715 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 24

Conread position: 16-413
Cow position: chr7:48635637-48636014 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 101

Conread position: 16-428
Cow position: chr7:24878679-24878264 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 142

Conread position: 16-432
Cow position: chr7:40268771-40268360 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 202

Conread position: 16-458
Cow position: chr7:26852655-26853088 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 52

Conread position: 16-520
Cow position: chr7:6647463-6646958 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 102

Conread position: 16-555
Cow position: chr7:995959-996486 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 101

Conread position: 16-600
Cow position: chr7:25440704-25441291 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 14

Conread position: 16-606
Cow position: chr7:58994787-58995360 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 146

Conread position: 16-629
Cow position: chr7:21311650-21312264 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 139

Conread position: 16-649
Cow position: chr7:67495307-67495942 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 18

Conread position: 16-650
Cow position: chr7:29471666-29472300 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 106

Conread position: 16-651
Cow position: chr7:5261722-5261078 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 148

Conread position: 16-651
Cow position: chr7:5308912-5308263 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 92

Conread position: 16-651
Cow position: chr7:6630099-6629458 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 241

Conread position: 16-651
Cow position: chr7:6721348-6721984 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 36

Conread position: 16-651
Cow position: chr7:13532704-13532064 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 206

Conread position: 16-651
Cow position: chr7:14214164-14213543 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 15

Conread position: 16-651
Cow position: chr7:20060685-20061327 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 432

Conread position: 16-651
Cow position: chr7:20774132-20773500 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 188

Conread position: 16-651
Cow position: chr7:21126460-21125834 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 103

Conread position: 16-651
Cow position: chr7:27101088-27100447 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 226

Conread position: 16-651
Cow position: chr7:33311748-33311104 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 394

Conread position: 16-651
Cow position: chr7:49829126-49828492 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 119

Conread position: 16-651
Cow position: chr7:51015464-51016085 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 51

Conread position: 16-651
Cow position: chr7:54649098-54649744 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 497

Conread position: 16-651
Cow position: chr7:59680055-59680691 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 58

Conread position: 16-651
Cow position: chr7:61578708-61579344 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 103

Conread position: 16-651
Cow position: chr7:63386936-63387577 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 296

Conread position: 16-651
Cow position: chr7:64239802-64239148 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 0

Conread position: 16-651
Cow position: chr7:65812023-65812667 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 132

Conread position: 16-651
Cow position: chr7:67800025-67800668 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 68

Conread position: 17-651
Cow position: chr7:546047-546680 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 199

Conread position: 18-651
Cow position: chr7:20514582-20513944 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 137

Conread position: 18-651
Cow position: chr7:21986623-21987248 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 14

Conread position: 19-486
Cow position: chr7:3299964-3299489 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 134

Conread position: 19-568
Cow position: chr7:29368818-29368281 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 23

Conread position: 19-651
Cow position: chr7:20798237-20797609 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 140

Conread position: 20-651
Cow position: chr7:68439264-68439867 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 127

Conread position: 23-585
Cow position: chr7:59138853-59139389 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 96

Conread position: 23-651
Cow position: chr7:33332768-33333406 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 206

Conread position: 23-651
Cow position: chr7:55041281-55040642 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 23-651
Cow position: chr7:64350694-64351331 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 375

Conread position: 24-600
Cow position: chr7:53407807-53408362 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 83

Conread position: 24-651
Cow position: chr7:1609427-1608793 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 24

Conread position: 25-356
Cow position: chr7:5663776-5664110 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 35

Conread position: 25-510
Cow position: chr7:1371433-1370943 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 197

Conread position: 25-651
Cow position: chr7:14138384-14137750 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 151

Conread position: 25-651
Cow position: chr7:21233797-21233166 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 352

Conread position: 25-651
Cow position: chr7:34487125-34487757 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 135

Conread position: 25-651
Cow position: chr7:38398027-38398661 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 506

Conread position: 25-651
Cow position: chr7:42871354-42871987 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 127

Conread position: 25-651
Cow position: chr7:52763492-52764129 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 305

Conread position: 25-651
Cow position: chr7:55536715-55536081 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 147

Conread position: 25-651
Cow position: chr7:62445936-62445308 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 193

Conread position: 26-292
Cow position: chr7:24058660-24058914 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 202
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 175, 89

Conread position: 26-538
Cow position: chr7:41875064-41874558 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 127

Conread position: 26-647
Cow position: chr7:445051-444419 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 26

Conread position: 26-649
Cow position: chr7:7259740-7260360 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 16

Conread position: 26-651
Cow position: chr7:3156680-3157317 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 56

Conread position: 34-651
Cow position: chr7:27788170-27788799 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 38

Conread position: 40-651
Cow position: chr7:48805215-48804592 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 48-381
Cow position: chr7:541730-541407 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 35

Conread position: 51-651
Cow position: chr7:8143749-8143133 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 365

Conread position: 52-361
Cow position: chr7:30303186-30303498 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 215
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 64, 106

Conread position: 54-357
Cow position: chr7:40320432-40320723 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 28

Conread position: 56-291
Cow position: chr7:62685887-62685664 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 192, 62

Conread position: 86-603
Cow position: chr7:20557011-20557539 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 93-651
Cow position: chr7:65872348-65871773 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 209

Conread position: 101-650
Cow position: chr7:39097259-39096700 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 38

Conread position: 115-298
Cow position: chr7:49730502-49730687 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 150
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 41, 0

Conread position: 140-651
Cow position: chr7:31095942-31095420 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 193

Conread position: 149-582
Cow position: chr7:54581190-54581632 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 15

Conread position: 152-355
Cow position: chr7:65452737-65452940 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 75, 110

Conread position: 170-650
Cow position: chr7:58337677-58337204 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 76

Conread position: 193-648
Cow position: chr7:61809386-61809849 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 193-651
Cow position: chr7:14528-14067 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 181

Conread position: 210-651
Cow position: chr7:6628008-6627562 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 45

Conread position: 225-442
Cow position: chr7:33067972-33067756 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 125, 31

Conread position: 225-651
Cow position: chr7:11462728-11462295 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 11

Conread position: 225-651
Cow position: chr7:33070995-33070568 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 25

Conread position: 230-631
Cow position: chr7:43396998-43396589 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 25

Conread position: 234-647
Cow position: chr7:23250039-23250460 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 234-651
Cow position: chr7:3126108-3126532 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 388

Conread position: 244-651
Cow position: chr7:66070697-66070286 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 299-626
Cow position: chr7:42305345-42305039 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 231
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 51, 23

Conread position: 303-650
Cow position: chr7:49730969-49731318 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 8

Conread position: 303-651
Cow position: chr7:34416858-34416505 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 23

Conread position: 323-651
Cow position: chr7:8336872-8337206 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 254

Conread position: 409-651
Cow position: chr7:3121599-3121840 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 178
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 171, 0

Conread position: 440-651
Cow position: chr7:37010336-37010125 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 476-651
Cow position: chr7:27459061-27458886 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 483-651
Cow position: chr7:6665162-6665330 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 487-651
Cow position: chr7:26928498-26928335 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 503-651
Cow position: chr7:6646695-6646547 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 518-651
Cow position: chr7:37164573-37164706 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.