Cow genome map
| Conread name: | Lym2-sn47_E05.f |
| Conread position: | 10-651 |
| Cow position: | chr9:44819182-44819816 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 38 |
| Conread position: | 13-651 |
| Cow position: | chr9:9647159-9647824 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 201 |
| Conread position: | 16-212 |
| Cow position: | chr9:3804592-3804787 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 16-221 |
| Cow position: | chr9:5798757-5798550 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 100, 178 |
| Conread position: | 16-360 |
| Cow position: | chr9:46859422-46859074 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 16-362 |
| Cow position: | chr9:4836301-4835953 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 240 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 99, 192 |
| Conread position: | 16-385 |
| Cow position: | chr9:60276977-60276604 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 10 |
| Conread position: | 16-498 |
| Cow position: | chr9:22654616-22655109 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 16-539 |
| Cow position: | chr9:30435612-30436143 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 351 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 89, 7 |
| Conread position: | 16-546 |
| Cow position: | chr9:3727643-3728167 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 43 |
| Conread position: | 16-559 |
| Cow position: | chr9:44384300-44384854 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 16-587 |
| Cow position: | chr9:4533534-4534113 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 85 |
| Conread position: | 16-625 |
| Cow position: | chr9:221471-220886 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 10 |
| Conread position: | 16-645 |
| Cow position: | chr9:27935417-27936057 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 16-645 |
| Cow position: | chr9:30673415-30674056 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 16-649 |
| Cow position: | chr9:2871363-2872013 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 534 |
| Conread position: | 16-649 |
| Cow position: | chr9:6977373-6977999 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 22 |
| Conread position: | 16-651 |
| Cow position: | chr9:1250960-1250315 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 16-651 |
| Cow position: | chr9:1995350-1994724 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 339 |
| Conread position: | 16-651 |
| Cow position: | chr9:2212178-2212822 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 135 |
| Conread position: | 16-651 |
| Cow position: | chr9:5005010-5005668 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 10 |
| Conread position: | 16-651 |
| Cow position: | chr9:7061042-7060383 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 10 |
| Conread position: | 16-651 |
| Cow position: | chr9:17063342-17062703 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 22 |
| Conread position: | 16-651 |
| Cow position: | chr9:28679012-28679638 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 292 |
| Conread position: | 16-651 |
| Cow position: | chr9:30827777-30828423 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 498 |
| Conread position: | 16-651 |
| Cow position: | chr9:31065758-31066401 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 132 |
| Conread position: | 16-651 |
| Cow position: | chr9:42310718-42311374 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 145 |
| Conread position: | 16-651 |
| Cow position: | chr9:50791753-50792398 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 57 |
| Conread position: | 16-651 |
| Cow position: | chr9:51211721-51212365 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 248 |
| Conread position: | 17-637 |
| Cow position: | chr9:59428051-59428667 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 46 |
| Conread position: | 17-651 |
| Cow position: | chr9:779780-779139 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 226 |
| Conread position: | 17-651 |
| Cow position: | chr9:46042191-46041569 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 18 |
| Conread position: | 18-626 |
| Cow position: | chr9:54925590-54926193 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 45 |
| Conread position: | 18-649 |
| Cow position: | chr9:828066-827429 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 347 |
| Conread position: | 18-651 |
| Cow position: | chr9:51181135-51180497 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 149 |
| Conread position: | 19-446 |
| Cow position: | chr9:3005196-3004766 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 98 |
| Conread position: | 19-651 |
| Cow position: | chr9:130121-129513 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 152 |
| Conread position: | 19-651 |
| Cow position: | chr9:38677187-38677827 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 315 |
| Conread position: | 19-651 |
| Cow position: | chr9:47042999-47043643 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 23-636 |
| Cow position: | chr9:5141759-5142365 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 59 |
| Conread position: | 23-650 |
| Cow position: | chr9:25188147-25188777 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 59 |
| Conread position: | 23-651 |
| Cow position: | chr9:650980-650342 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 236 |
| Conread position: | 23-651 |
| Cow position: | chr9:26083510-26082878 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 77 |
| Conread position: | 24-626 |
| Cow position: | chr9:20939367-20939967 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 164 |
| Conread position: | 24-651 |
| Cow position: | chr9:4283015-4283640 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 133 |
| Conread position: | 24-651 |
| Cow position: | chr9:25034516-25033884 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 557 |
| Conread position: | 25-265 |
| Cow position: | chr9:26736802-26737044 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 215 |
| Conread position: | 25-412 |
| Cow position: | chr9:29027162-29026763 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 104 |
| Conread position: | 25-422 |
| Cow position: | chr9:2497928-2497521 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 32 |
| Conread position: | 25-432 |
| Cow position: | chr9:47003235-47003641 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 137 |
| Conread position: | 25-463 |
| Cow position: | chr9:59481747-59481314 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 117 |
| Conread position: | 25-526 |
| Cow position: | chr9:10937644-10938150 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 123 |
| Conread position: | 25-612 |
| Cow position: | chr9:24980875-24980304 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 384 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 25-631 |
| Cow position: | chr9:18508773-18508163 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 141 |
| Conread position: | 25-651 |
| Cow position: | chr9:3309671-3310297 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 61 |
| Conread position: | 25-651 |
| Cow position: | chr9:4942763-4942121 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 36 |
| Conread position: | 25-651 |
| Cow position: | chr9:27783237-27783868 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 135 |
| Conread position: | 25-651 |
| Cow position: | chr9:31808626-31809259 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 211 |
| Conread position: | 26-631 |
| Cow position: | chr9:37970157-37969546 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 150 |
| Conread position: | 26-651 |
| Cow position: | chr9:17304926-17304293 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 13 |
| Conread position: | 26-651 |
| Cow position: | chr9:50698353-50698973 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 72 |
| Conread position: | 45-651 |
| Cow position: | chr9:25903574-25904204 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 411 |
| Conread position: | 48-651 |
| Cow position: | chr9:1075117-1074493 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 53-651 |
| Cow position: | chr9:20176639-20176030 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 51 |
| Conread position: | 65-361 |
| Cow position: | chr9:30191294-30191001 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 55, 141 |
| Conread position: | 67-650 |
| Cow position: | chr9:2679360-2679954 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 19 |
| Conread position: | 86-651 |
| Cow position: | chr9:27036016-27036583 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 90 |
| Conread position: | 93-446 |
| Cow position: | chr9:7105313-7104950 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 109 |
| Conread position: | 100-651 |
| Cow position: | chr9:22436094-22436633 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 119-651 |
| Cow position: | chr9:7003876-7004416 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 26 |
| Conread position: | 140-651 |
| Cow position: | chr9:50094073-50093554 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 170-651 |
| Cow position: | chr9:12912973-12913465 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 86 |
| Conread position: | 170-651 |
| Cow position: | chr9:45874720-45875197 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 49 |
| Conread position: | 172-651 |
| Cow position: | chr9:64015473-64014989 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 24 |
| Conread position: | 176-651 |
| Cow position: | chr9:8781708-8781245 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 20 |
| Conread position: | 184-489 |
| Cow position: | chr9:56155802-56155501 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 113, 59 |
| Conread position: | 229-649 |
| Cow position: | chr9:9707380-9707798 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 285 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 68, 27 |
| Conread position: | 230-651 |
| Cow position: | chr9:26737168-26737604 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 6 |
| Conread position: | 274-630 |
| Cow position: | chr9:10976416-10976777 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 34 |
| Conread position: | 277-631 |
| Cow position: | chr9:4308060-4307702 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 19, 161 |
| Conread position: | 328-626 |
| Cow position: | chr9:28000874-28001182 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 393-651 |
| Cow position: | chr9:56303027-56302769 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 440-651 |
| Cow position: | chr9:203822-203611 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 469-651 |
| Cow position: | chr9:14001559-14001738 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
Show alignments to all cow chromosomes.