Cow genome map
| Conread name: | Lym2-sn59_C08.f1 |
| Conread position: | 224-387 |
| Cow position: | chrX:44339296-44339129 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 227-387 |
| Cow position: | chrX:41166790-41166638 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 239-429 |
| Cow position: | chrX:40056172-40055983 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 169, 95 |
| Conread position: | 241-446 |
| Cow position: | chrX:26979744-26979534 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 9, 41 |
| Conread position: | 244-446 |
| Cow position: | chrX:4169982-4169782 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 71 |
| Conread position: | 247-427 |
| Cow position: | chrX:11602429-11602246 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 140, 13 |
| Conread position: | 248-386 |
| Cow position: | chrX:22115264-22115125 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 6, 96 |
| Conread position: | 248-387 |
| Cow position: | chrX:10516306-10516445 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 6, 94 |
| Conread position: | 248-439 |
| Cow position: | chrX:17231788-17231993 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 6, 88 |
| Conread position: | 248-445 |
| Cow position: | chrX:20887588-20887393 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 6, 88 |
| Conread position: | 248-446 |
| Cow position: | chrX:35885674-35885480 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 6, 87 |
| Conread position: | 250-387 |
| Cow position: | chrX:11653826-11653958 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 250-387 |
| Cow position: | chrX:40680670-40680806 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 250-431 |
| Cow position: | chrX:42760308-42760487 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 168, 84 |
| Conread position: | 251-440 |
| Cow position: | chrX:24170671-24170479 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 9 |
| Conread position: | 252-446 |
| Cow position: | chrX:15545940-15546145 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 67, 62 |
| Conread position: | 255-387 |
| Cow position: | chrX:27074990-27074860 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 255-387 |
| Cow position: | chrX:43008670-43008801 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 255-387 |
| Cow position: | chrX:46068698-46068572 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 255-387 |
| Cow position: | chrX:46532434-46532299 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 255-401 |
| Cow position: | chrX:31252469-31252613 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 255-406 |
| Cow position: | chrX:34502981-34503138 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 255-422 |
| Cow position: | chrX:42836242-42836410 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 134, 79 |
| Conread position: | 255-435 |
| Cow position: | chrX:32747793-32747973 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 132, 79 |
| Conread position: | 255-437 |
| Cow position: | chrX:36976012-36976191 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 255-441 |
| Cow position: | chrX:32877314-32877126 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 132, 79 |
| Conread position: | 255-456 |
| Cow position: | chrX:42875273-42875481 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 131, 79 |
| Conread position: | 255-472 |
| Cow position: | chrX:17956752-17956965 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 162, 16 |
| Conread position: | 256-386 |
| Cow position: | chrX:39220141-39220276 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 256-386 |
| Cow position: | chrX:41027221-41027350 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 256-387 |
| Cow position: | chrX:1122485-1122355 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 256-387 |
| Cow position: | chrX:31294510-31294378 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 256-387 |
| Cow position: | chrX:38301871-38302005 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 256-401 |
| Cow position: | chrX:26692273-26692425 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 256-422 |
| Cow position: | chrX:18964767-18964600 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 80, 154 |
| Conread position: | 256-432 |
| Cow position: | chrX:34222778-34222950 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 161, 34 |
| Conread position: | 256-437 |
| Cow position: | chrX:27705648-27705835 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 116, 84 |
| Conread position: | 256-439 |
| Cow position: | chrX:13005332-13005151 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 150, 78 |
| Conread position: | 256-442 |
| Cow position: | chrX:15147135-15146942 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 75, 88 |
| Conread position: | 256-446 |
| Cow position: | chrX:39180171-39179984 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 144, 41 |
| Conread position: | 256-452 |
| Cow position: | chrX:17498384-17498586 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 130, 78 |
| Conread position: | 256-454 |
| Cow position: | chrX:42247120-42246913 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 130, 78 |
| Conread position: | 256-458 |
| Cow position: | chrX:21288546-21288338 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 47, 82 |
| Conread position: | 259-387 |
| Cow position: | chrX:4559798-4559925 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 259-429 |
| Cow position: | chrX:42086892-42087070 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 129, 83 |
| Conread position: | 259-442 |
| Cow position: | chrX:14925337-14925526 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 127, 87 |
| Conread position: | 259-442 |
| Cow position: | chrX:35285238-35285418 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 260-430 |
| Cow position: | chrX:16323952-16323782 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 83, 156 |
| Conread position: | 260-430 |
| Cow position: | chrX:24633761-24633929 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 128, 74 |
| Conread position: | 260-442 |
| Cow position: | chrX:30042024-30041841 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 148, 7 |
| Conread position: | 260-446 |
| Cow position: | chrX:20339826-20339638 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 121, 30 |
| Conread position: | 260-454 |
| Cow position: | chrX:46909881-46910069 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 155, 74 |
| Conread position: | 260-458 |
| Cow position: | chrX:24331842-24332034 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 267-387 |
| Cow position: | chrX:169473-169350 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 267-428 |
| Cow position: | chrX:7351370-7351544 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 268-435 |
| Cow position: | chrX:36961790-36961960 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 62, 75 |
| Conread position: | 269-446 |
| Cow position: | chrX:35658871-35659052 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 118, 73 |
| Conread position: | 277-458 |
| Cow position: | chrX:21173-21351 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 278-443 |
| Cow position: | chrX:6907324-6907160 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 114, 46 |
Show alignments to all cow chromosomes.