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Cow genome map

           
Conread name:
           
Lym2-sn60_G12.f
        

               
Conread position:
               
1-113
               

               
Cow position:
               
chrX:18196232-18196118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
1-113
               

               
Cow position:
               
chrX:32590173-32590286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chrX:19161896-19162014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1-134
               

               
Cow position:
               
chrX:42216401-42216532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1-137
               

               
Cow position:
               
chrX:42159174-42159037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chrX:876615-876758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 55
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chrX:33678238-33678403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chrX:28850949-28850791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chrX:33466854-33466692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
66, 35
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chrX:48574122-48574289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chrX:1938246-1938077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 92
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chrX:41199454-41199280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
138, 72
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chrX:4092155-4091954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chrX:21328146-21327942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
77, 190
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chrX:8642277-8642072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
77, 145
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chrX:12219380-12219171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chrX:46532258-46532476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chrX:31480198-31479987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
105, 76
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chrX:27261423-27261205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
16, 34
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chrX:40680847-40680628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chrX:20168787-20168572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
77, 36
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chrX:16836062-16836274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
206, 72
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chrX:27508792-27509010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
77, 122
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chrX:31489753-31489532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
77, 207
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chrX:42432280-42432502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
13, 79
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chrX:5134706-5134484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 140
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chrX:9201775-9201556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
41, 78
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chrX:22115082-22115309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
41, 101
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chrX:42380880-42381104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chrX:20887417-20887633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
105, 36
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chrX:22284071-22283844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
75, 153
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chrX:26493239-26493010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chrX:35431010-35431239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
76, 15
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chrX:28013207-28013452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
8, 39
               

               
Conread position:
               
2-185
               

               
Cow position:
               
chrX:32747951-32747780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chrX:13122175-13121950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chrX:32420441-32420226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chrX:35392074-35392282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
207, 37
               

               
Conread position:
               
2-224
               

               
Cow position:
               
chrX:16984866-16984649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
117, 71
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chrX:8869174-8869394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
111, 74
               

               
Conread position:
               
4-126
               

               
Cow position:
               
chrX:38726915-38727031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
4-147
               

               
Cow position:
               
chrX:1996220-1996366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
4-149
               

               
Cow position:
               
chrX:37177096-37176958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
4-150
               

               
Cow position:
               
chrX:31279698-31279841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
4-150
               

               
Cow position:
               
chrX:42506717-42506866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
4-155
               

               
Cow position:
               
chrX:17744850-17744701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
112, 73
               

               
Conread position:
               
4-170
               

               
Cow position:
               
chrX:51673-51838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 88
               

               
Conread position:
               
4-170
               

               
Cow position:
               
chrX:23335746-23335913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
4-170
               

               
Cow position:
               
chrX:40556234-40556396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
111, 62
               

               
Conread position:
               
4-170
               

               
Cow position:
               
chrX:42087055-42086890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
74, 35
               

               
Conread position:
               
4-171
               

               
Cow position:
               
chrX:4750109-4750270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
115, 40
               

               
Conread position:
               
4-182
               

               
Cow position:
               
chrX:12972-12801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
4-186
               

               
Cow position:
               
chrX:42875438-42875259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
4-191
               

               
Cow position:
               
chrX:31983349-31983543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chrX:16555994-16556179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chrX:5026480-5026288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 71
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chrX:23358888-23359079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
4-203
               

               
Cow position:
               
chrX:7351530-7351330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
74, 32
               

               
Conread position:
               
4-203
               

               
Cow position:
               
chrX:42894151-42893956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chrX:30958957-30958754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
74, 38
               

               
Conread position:
               
4-215
               

               
Cow position:
               
chrX:4109414-4109202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
80, 74
               

               
Conread position:
               
4-215
               

               
Cow position:
               
chrX:38964326-38964126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
4-217
               

               
Cow position:
               
chrX:34315756-34315534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
4-218
               

               
Cow position:
               
chrX:161629-161426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
200, 31
               

               
Conread position:
               
4-218
               

               
Cow position:
               
chrX:17524154-17524370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
4-218
               

               
Cow position:
               
chrX:27446912-27446700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
201, 66
               

               
Conread position:
               
4-218
               

               
Cow position:
               
chrX:27705816-27705601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
40, 48
               

               
Conread position:
               
4-219
               

               
Cow position:
               
chrX:20957466-20957251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
74, 11
               

               
Conread position:
               
4-219
               

               
Cow position:
               
chrX:40320637-40320419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
4-219
               

               
Cow position:
               
chrX:44590830-44591049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 206
               

               
Conread position:
               
4-220
               

               
Cow position:
               
chrX:25035152-25035370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
4-222
               

               
Cow position:
               
chrX:8917624-8917404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
74, 205
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chrX:4996818-4996593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 98
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chrX:11325880-11326089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
203, 12
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chrX:13913304-13913084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
92, 72
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chrX:34792094-34792303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
201, 32
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chrX:42480056-42479841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 28
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chrX:45110880-45110663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
178, 70
               

               
Conread position:
               
4-225
               

               
Cow position:
               
chrX:29050471-29050257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
112, 36
               

               
Conread position:
               
4-226
               

               
Cow position:
               
chrX:5919716-5919498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
132, 33
               

               
Conread position:
               
4-226
               

               
Cow position:
               
chrX:12972907-12972687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
132, 70
               

               
Conread position:
               
4-226
               

               
Cow position:
               
chrX:32942851-32943070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
74, 33
               

               
Conread position:
               
4-226
               

               
Cow position:
               
chrX:35986044-35985826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 33
               

               
Conread position:
               
4-226
               

               
Cow position:
               
chrX:39290584-39290365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
38, 75
               

               
Conread position:
               
4-226
               

               
Cow position:
               
chrX:41871286-41871073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
203, 56
               

               
Conread position:
               
4-229
               

               
Cow position:
               
chrX:25815670-25815898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
74, 114
               

               
Conread position:
               
5-116
               

               
Cow position:
               
chrX:23185109-23185221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
5-121
               

               
Cow position:
               
chrX:38080376-38080258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
5-133
               

               
Cow position:
               
chrX:41194133-41194005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 48
               

               
Conread position:
               
5-134
               

               
Cow position:
               
chrX:15533982-15534113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
5-150
               

               
Cow position:
               
chrX:17929226-17929084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
5-152
               

               
Cow position:
               
chrX:11670915-11670767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-155
               

               
Cow position:
               
chrX:34108130-34108280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 47
               

               
Conread position:
               
5-161
               

               
Cow position:
               
chrX:16770293-16770136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
5-163
               

               
Cow position:
               
chrX:30789301-30789461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
5-164
               

               
Cow position:
               
chrX:11674340-11674178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-165
               

               
Cow position:
               
chrX:152133-151969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
67, 117
               

               
Conread position:
               
5-165
               

               
Cow position:
               
chrX:18204238-18204395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
55, 31
               

               
Conread position:
               
5-165
               

               
Cow position:
               
chrX:41215551-41215390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-168
               

               
Cow position:
               
chrX:14135903-14135743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
5-168
               

               
Cow position:
               
chrX:45657707-45657878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
5-169
               

               
Cow position:
               
chrX:4559962-4559797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
5-169
               

               
Cow position:
               
chrX:9451569-9451409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 56
               

               
Conread position:
               
5-170
               

               
Cow position:
               
chrX:10279103-10278933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
74, 31
               

               
Conread position:
               
5-170
               

               
Cow position:
               
chrX:14925501-14925335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-170
               

               
Cow position:
               
chrX:16801039-16801200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
73, 34
               

               
Conread position:
               
5-171
               

               
Cow position:
               
chrX:11589139-11589305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
73, 63
               

               
Conread position:
               
5-176
               

               
Cow position:
               
chrX:16323787-16323961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
5-177
               

               
Cow position:
               
chrX:6480367-6480540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-177
               

               
Cow position:
               
chrX:20977285-20977453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
73, 34
               

               
Conread position:
               
5-179
               

               
Cow position:
               
chrX:5915419-5915242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-180
               

               
Cow position:
               
chrX:296620-296444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-181
               

               
Cow position:
               
chrX:4169800-4169979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
39, 92
               

               
Conread position:
               
5-181
               

               
Cow position:
               
chrX:34377167-34376994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-182
               

               
Cow position:
               
chrX:1960197-1960374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-182
               

               
Cow position:
               
chrX:4268842-4269013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
5-182
               

               
Cow position:
               
chrX:5097566-5097748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
5-182
               

               
Cow position:
               
chrX:8759851-8759677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 140
               

               
Conread position:
               
5-182
               

               
Cow position:
               
chrX:18030188-18030366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
5-182
               

               
Cow position:
               
chrX:27415360-27415529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
5-182
               

               
Cow position:
               
chrX:32019905-32020083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-182
               

               
Cow position:
               
chrX:40108285-40108467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-182
               

               
Cow position:
               
chrX:42760481-42760303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
82, 73
               

               
Conread position:
               
5-185
               

               
Cow position:
               
chrX:37867482-37867301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-185
               

               
Cow position:
               
chrX:47100366-47100549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chrX:6389307-6389128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chrX:10415024-10415206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chrX:29451317-29451504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chrX:35409980-35409799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
73, 129
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chrX:42461399-42461571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chrX:43150659-43150478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
73, 106
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chrX:46068536-46068712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
5-188
               

               
Cow position:
               
chrX:597250-597429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 131
               

               
Conread position:
               
5-188
               

               
Cow position:
               
chrX:6634573-6634389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-188
               

               
Cow position:
               
chrX:11517750-11517935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
5-188
               

               
Cow position:
               
chrX:14951125-14951308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
83, 71
               

               
Conread position:
               
5-188
               

               
Cow position:
               
chrX:41454725-41454909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-189
               

               
Cow position:
               
chrX:41011118-41010942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
5-190
               

               
Cow position:
               
chrX:34193852-34194036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
73, 161
               

               
Conread position:
               
5-191
               

               
Cow position:
               
chrX:27442310-27442497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-196
               

               
Cow position:
               
chrX:37751883-37752069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chrX:11454402-11454221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chrX:17498551-17498357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chrX:27270597-27270410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
134, 38
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chrX:34565513-34565321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
75, 68
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chrX:48822114-48822310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
73, 89
               

               
Conread position:
               
5-202
               

               
Cow position:
               
chrX:18439225-18439027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-203
               

               
Cow position:
               
chrX:16763702-16763897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
187, 69
               

               
Conread position:
               
5-203
               

               
Cow position:
               
chrX:24170497-24170699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
73, 139
               

               
Conread position:
               
5-203
               

               
Cow position:
               
chrX:25930868-25930667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
73, 40
               

               
Conread position:
               
5-203
               

               
Cow position:
               
chrX:35659022-35658829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 31
               

               
Conread position:
               
5-203
               

               
Cow position:
               
chrX:37749766-37749953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-203
               

               
Cow position:
               
chrX:38094298-38094486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
5-203
               

               
Cow position:
               
chrX:40649130-40648924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-203
               

               
Cow position:
               
chrX:41790199-41790399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
60, 66
               

               
Conread position:
               
5-203
               

               
Cow position:
               
chrX:44040405-44040211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
73, 173
               

               
Conread position:
               
5-203
               

               
Cow position:
               
chrX:46910036-46909845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
5-204
               

               
Cow position:
               
chrX:12095543-12095743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-204
               

               
Cow position:
               
chrX:25037220-25037018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
69, 190
               

               
Conread position:
               
5-204
               

               
Cow position:
               
chrX:27416323-27416121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 155
               

               
Conread position:
               
5-204
               

               
Cow position:
               
chrX:36283568-36283369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
73, 111
               

               
Conread position:
               
5-209
               

               
Cow position:
               
chrX:41453527-41453326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
5-210
               

               
Cow position:
               
chrX:37072614-37072412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
5-211
               

               
Cow position:
               
chrX:28068079-28067872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-211
               

               
Cow position:
               
chrX:40337139-40336933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
73, 168
               

               
Conread position:
               
5-212
               

               
Cow position:
               
chrX:34398555-34398763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-214
               

               
Cow position:
               
chrX:908169-907965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
112, 68
               

               
Conread position:
               
5-214
               

               
Cow position:
               
chrX:28940472-28940261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 81
               

               
Conread position:
               
5-215
               

               
Cow position:
               
chrX:19717739-19717539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
5-215
               

               
Cow position:
               
chrX:20345679-20345470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
73, 186
               

               
Conread position:
               
5-215
               

               
Cow position:
               
chrX:41027388-41027177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chrX:16762996-16762787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
131, 68
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chrX:19356692-19356485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
73, 150
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chrX:20583888-20583682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
204, 31
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chrX:23471640-23471849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
89, 72
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chrX:31442611-31442813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
202, 68
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chrX:38549675-38549461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 64
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chrX:41238134-41238338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
200, 69
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chrX:46588048-46587838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
208, 58
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chrX:8493294-8493081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
73, 23
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chrX:32877151-32877359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
79, 32
               

               
Conread position:
               
5-218
               

               
Cow position:
               
chrX:3806906-3806696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
200, 73
               

               
Conread position:
               
5-218
               

               
Cow position:
               
chrX:4399346-4399140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
73, 84
               

               
Conread position:
               
5-218
               

               
Cow position:
               
chrX:9251935-9252149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
109, 72
               

               
Conread position:
               
5-218
               

               
Cow position:
               
chrX:10859085-10859298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
190, 72
               

               
Conread position:
               
5-218
               

               
Cow position:
               
chrX:19018600-19018817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-218
               

               
Cow position:
               
chrX:25845845-25846059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 97
               

               
Conread position:
               
5-218
               

               
Cow position:
               
chrX:36356332-36356126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
200, 68
               

               
Conread position:
               
5-218
               

               
Cow position:
               
chrX:38218941-38218728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
124, 72
               

               
Conread position:
               
5-218
               

               
Cow position:
               
chrX:42246953-42247168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-218
               

               
Cow position:
               
chrX:44859634-44859849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
74, 203
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chrX:11633910-11633696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
90, 74
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chrX:17956917-17956707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chrX:18111607-18111391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chrX:22921549-22921334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
73, 127
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chrX:23563562-23563778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chrX:24335848-24336064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
73, 203
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chrX:31948706-31948922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
73, 203
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chrX:35285402-35285187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chrX:36109386-36109603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chrX:43008838-43008622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
75, 203
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chrX:44055031-44054815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chrX:44201817-44202033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 203
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chrX:5063464-5063263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 26
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chrX:7179111-7178909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
200, 34
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chrX:17949264-17949476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 202
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chrX:24332005-24331788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chrX:25207633-25207843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
200, 72
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chrX:26205230-26205436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
200, 14
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chrX:31250618-31250400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
5-221
               

               
Cow position:
               
chrX:29467554-29467767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
202, 83
               

               
Conread position:
               
5-222
               

               
Cow position:
               
chrX:3580173-3579954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-222
               

               
Cow position:
               
chrX:4632626-4632848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-222
               

               
Cow position:
               
chrX:10251974-10252188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
87, 69
               

               
Conread position:
               
5-222
               

               
Cow position:
               
chrX:12290946-12290729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
207, 73
               

               
Conread position:
               
5-222
               

               
Cow position:
               
chrX:32208599-32208812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
203, 52
               

               
Conread position:
               
5-222
               

               
Cow position:
               
chrX:42855691-42855468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chrX:25049053-25049273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chrX:40574715-40574933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
73, 83
               

               
Conread position:
               
5-224
               

               
Cow position:
               
chrX:27668734-27668950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
202, 47
               

               
Conread position:
               
5-225
               

               
Cow position:
               
chrX:34314249-34314038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
5-225
               

               
Cow position:
               
chrX:34504826-34505042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
115, 11
               

               
Conread position:
               
5-225
               

               
Cow position:
               
chrX:41941851-41941630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
73, 58
               

               
Conread position:
               
5-225
               

               
Cow position:
               
chrX:43115377-43115158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
202, 72
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:4403546-4403317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:6599546-6599776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:11656306-11656087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
200, 73
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:12979607-12979828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
200, 72
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:14883729-14883950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
132, 79
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:17231965-17231741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:17293184-17292961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:19394783-19394559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
72, 86
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:26843038-26843263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:27175228-27175009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
42, 175
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:27431696-27431912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
202, 31
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:30337726-30337946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
73, 156
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:33854998-33855214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
204, 30
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:34412076-34411852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:38560778-38560565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
202, 68
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:38853439-38853204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 173
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:40826522-40826744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 220
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:42492293-42492517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
51, 59
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:45254354-45254577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
75, 203
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:45391485-45391708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
73, 203
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:45977152-45976932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
109, 38
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:48004074-48003852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
73, 109
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:48010833-48010610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
81, 73
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:48071390-48071167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chrX:33654615-33654839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-235
               

               
Cow position:
               
chrX:15231431-15231663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 203
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chrX:13177256-13177490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
191, 31
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chrX:24365594-24365837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
71, 135
               

               
Conread position:
               
6-126
               

               
Cow position:
               
chrX:42220474-42220595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
6-155
               

               
Cow position:
               
chrX:37717949-37717800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
72, 140
               

               
Conread position:
               
6-170
               

               
Cow position:
               
chrX:39642401-39642559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
6-171
               

               
Cow position:
               
chrX:11602260-11602421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 30
               

               
Conread position:
               
6-181
               

               
Cow position:
               
chrX:34991588-34991416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
6-186
               

               
Cow position:
               
chrX:48558973-48558793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
72, 47
               

               
Conread position:
               
6-196
               

               
Cow position:
               
chrX:41435315-41435512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
6-201
               

               
Cow position:
               
chrX:32867097-32866907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
6-213
               

               
Cow position:
               
chrX:13924088-13923884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
6-215
               

               
Cow position:
               
chrX:47855204-47854998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
201, 71
               

               
Conread position:
               
6-218
               

               
Cow position:
               
chrX:32910324-32910118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
200, 71
               

               
Conread position:
               
6-219
               

               
Cow position:
               
chrX:36393114-36393326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 152
               

               
Conread position:
               
6-226
               

               
Cow position:
               
chrX:37780885-37781103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
116, 32
               

               
Conread position:
               
7-171
               

               
Cow position:
               
chrX:22552753-22552917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
71, 30
               

               
Conread position:
               
7-177
               

               
Cow position:
               
chrX:28107072-28106903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
7-180
               

               
Cow position:
               
chrX:41858658-41858829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
105, 70
               

               
Conread position:
               
7-222
               

               
Cow position:
               
chrX:29723977-29723750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
7-222
               

               
Cow position:
               
chrX:38968121-38967898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 157
               

               
Conread position:
               
7-225
               

               
Cow position:
               
chrX:5118272-5118495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
71, 95
               

               
Conread position:
               
7-226
               

               
Cow position:
               
chrX:2936179-2935963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
201, 71
               

               
Conread position:
               
8-177
               

               
Cow position:
               
chrX:15100203-15100039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
99, 43
               

               
Conread position:
               
9-186
               

               
Cow position:
               
chrX:45759893-45759718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
45, 70
               

               
Conread position:
               
9-203
               

               
Cow position:
               
chrX:47755821-47756010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
9-214
               

               
Cow position:
               
chrX:29601605-29601809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
9-222
               

               
Cow position:
               
chrX:41674321-41674114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
107, 27
               

               
Conread position:
               
10-154
               

               
Cow position:
               
chrX:42515906-42516051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
10-158
               

               
Cow position:
               
chrX:4486801-4486949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
68, 81
               

               
Conread position:
               
10-163
               

               
Cow position:
               
chrX:3494827-3494975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
10-171
               

               
Cow position:
               
chrX:23497474-23497629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
10-181
               

               
Cow position:
               
chrX:21986078-21986239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
10-190
               

               
Cow position:
               
chrX:42539770-42539602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
10-201
               

               
Cow position:
               
chrX:8327128-8326936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
10-201
               

               
Cow position:
               
chrX:35382819-35383004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
10-211
               

               
Cow position:
               
chrX:27074828-27075029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
10-215
               

               
Cow position:
               
chrX:6544468-6544275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
10-218
               

               
Cow position:
               
chrX:15006936-15007135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
195, 59
               

               
Conread position:
               
10-218
               

               
Cow position:
               
chrX:39220311-39220093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
31, 206
               

               
Conread position:
               
10-219
               

               
Cow position:
               
chrX:46022998-46022788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
68, 165
               

               
Conread position:
               
10-220
               

               
Cow position:
               
chrX:4327959-4328171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
20, 102
               

               
Conread position:
               
10-220
               

               
Cow position:
               
chrX:17795202-17794993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
69, 14
               

               
Conread position:
               
10-222
               

               
Cow position:
               
chrX:38302037-38301819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
10-223
               

               
Cow position:
               
chrX:27145822-27145613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
197, 64
               

               
Conread position:
               
10-226
               

               
Cow position:
               
chrX:1087925-1088134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
106, 65
               

               
Conread position:
               
10-226
               

               
Cow position:
               
chrX:22392765-22392978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
197, 64
               

               
Conread position:
               
10-226
               

               
Cow position:
               
chrX:24749310-24749094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
68, 159
               

               
Conread position:
               
10-226
               

               
Cow position:
               
chrX:26881339-26881559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
68, 42
               

               
Conread position:
               
10-226
               

               
Cow position:
               
chrX:29230230-29230005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
81, 66
               

               
Conread position:
               
10-226
               

               
Cow position:
               
chrX:42927607-42927818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
203, 40
               

               
Conread position:
               
10-226
               

               
Cow position:
               
chrX:47345553-47345333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
68, 92
               

               
Conread position:
               
10-230
               

               
Cow position:
               
chrX:1122324-1122541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
68, 20
               

               
Conread position:
               
11-181
               

               
Cow position:
               
chrX:41166607-41166773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
11-218
               

               
Cow position:
               
chrX:15146977-15147179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
84, 28
               

               
Conread position:
               
11-220
               

               
Cow position:
               
chrX:6559234-6559436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
67, 125
               

               
Conread position:
               
11-226
               

               
Cow position:
               
chrX:1466385-1466168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 69
               

               
Conread position:
               
12-134
               

               
Cow position:
               
chrX:40583091-40583215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
13-186
               

               
Cow position:
               
chrX:30840761-30840593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
13-210
               

               
Cow position:
               
chrX:19795290-19795478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
139, 11
               

               
Conread position:
               
13-219
               

               
Cow position:
               
chrX:10831261-10831476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
65, 129
               

               
Conread position:
               
13-219
               

               
Cow position:
               
chrX:47344519-47344309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
65, 197
               

               
Conread position:
               
14-155
               

               
Cow position:
               
chrX:44702846-44702988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
14-203
               

               
Cow position:
               
chrX:31986353-31986542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
64, 86
               

               
Conread position:
               
14-227
               

               
Cow position:
               
chrX:41809956-41810162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
15-194
               

               
Cow position:
               
chrX:31250676-31250856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
15-198
               

               
Cow position:
               
chrX:13868922-13868737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
78, 63
               

               
Conread position:
               
15-203
               

               
Cow position:
               
chrX:11781465-11781283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
63, 102
               

               
Conread position:
               
15-211
               

               
Cow position:
               
chrX:34420954-34420756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
15-218
               

               
Cow position:
               
chrX:20339677-20339877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
15-218
               

               
Cow position:
               
chrX:30672166-30672382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
63, 204
               

               
Conread position:
               
15-220
               

               
Cow position:
               
chrX:7648194-7648398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
23, 103
               

               
Conread position:
               
15-226
               

               
Cow position:
               
chrX:34544004-34543790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
15-226
               

               
Cow position:
               
chrX:45449128-45448908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
16-133
               

               
Cow position:
               
chrX:783662-783544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
16-140
               

               
Cow position:
               
chrX:10479967-10479842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
16-144
               

               
Cow position:
               
chrX:39886995-39887125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
16-156
               

               
Cow position:
               
chrX:28167196-28167056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 74
               

               
Conread position:
               
16-170
               

               
Cow position:
               
chrX:6640641-6640490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
16-170
               

               
Cow position:
               
chrX:34270778-34270624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
62, 49
               

               
Conread position:
               
16-172
               

               
Cow position:
               
chrX:26881862-26882019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
16-176
               

               
Cow position:
               
chrX:37867650-37867489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
16-180
               

               
Cow position:
               
chrX:11529555-11529395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
154, 58
               

               
Conread position:
               
16-182
               

               
Cow position:
               
chrX:46533087-46533254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
16-185
               

               
Cow position:
               
chrX:32821257-32821076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
16-186
               

               
Cow position:
               
chrX:13347486-13347320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
62, 120
               

               
Conread position:
               
16-186
               

               
Cow position:
               
chrX:35681784-35681614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
62, 78
               

               
Conread position:
               
16-186
               

               
Cow position:
               
chrX:41878720-41878883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
62, 24
               

               
Conread position:
               
16-186
               

               
Cow position:
               
chrX:48495215-48495044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 158
               

               
Conread position:
               
16-201
               

               
Cow position:
               
chrX:46546656-46546845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
16-203
               

               
Cow position:
               
chrX:30962658-30962847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
16-203
               

               
Cow position:
               
chrX:44995717-44995528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
16-204
               

               
Cow position:
               
chrX:36921924-36922113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
60, 43
               

               
Conread position:
               
16-214
               

               
Cow position:
               
chrX:1175773-1175963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
62, 39
               

               
Conread position:
               
16-214
               

               
Cow position:
               
chrX:19761966-19761773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
16-214
               

               
Cow position:
               
chrX:34554941-34554742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
16-215
               

               
Cow position:
               
chrX:6407761-6407564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
62, 144
               

               
Conread position:
               
16-216
               

               
Cow position:
               
chrX:5872549-5872333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
16-218
               

               
Cow position:
               
chrX:29478939-29478738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
197, 62
               

               
Conread position:
               
16-218
               

               
Cow position:
               
chrX:33001115-33000919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
96, 57
               

               
Conread position:
               
16-218
               

               
Cow position:
               
chrX:35269073-35268880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
16-218
               

               
Cow position:
               
chrX:35276203-35276000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
16-218
               

               
Cow position:
               
chrX:42449796-42450000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
16-218
               

               
Cow position:
               
chrX:42836398-42836195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
62, 83
               

               
Conread position:
               
16-218
               

               
Cow position:
               
chrX:44091140-44090936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
16-219
               

               
Cow position:
               
chrX:21642264-21642469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
16-219
               

               
Cow position:
               
chrX:45139714-45139919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
16-220
               

               
Cow position:
               
chrX:36367717-36367929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
16-220
               

               
Cow position:
               
chrX:44339104-44339309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
62, 18
               

               
Conread position:
               
16-220
               

               
Cow position:
               
chrX:45875607-45875404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
62, 23
               

               
Conread position:
               
16-222
               

               
Cow position:
               
chrX:40685112-40685318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
196, 63
               

               
Conread position:
               
16-223
               

               
Cow position:
               
chrX:32330388-32330176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
62, 195
               

               
Conread position:
               
16-224
               

               
Cow position:
               
chrX:38642459-38642257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
191, 30
               

               
Conread position:
               
16-227
               

               
Cow position:
               
chrX:10516471-10516258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
62, 128
               

               
Conread position:
               
17-150
               

               
Cow position:
               
chrX:35509464-35509596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
17-154
               

               
Cow position:
               
chrX:42314675-42314813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
17-162
               

               
Cow position:
               
chrX:11678795-11678648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
75, 56
               

               
Conread position:
               
17-163
               

               
Cow position:
               
chrX:39094117-39094252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
17-185
               

               
Cow position:
               
chrX:19000343-19000174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
17-190
               

               
Cow position:
               
chrX:10237697-10237869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
61, 85
               

               
Conread position:
               
17-190
               

               
Cow position:
               
chrX:11813290-11813119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
61, 149
               

               
Conread position:
               
17-202
               

               
Cow position:
               
chrX:34441237-34441423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
17-203
               

               
Cow position:
               
chrX:2314402-2314589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
17-218
               

               
Cow position:
               
chrX:4645698-4645899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
195, 61
               

               
Conread position:
               
17-219
               

               
Cow position:
               
chrX:8731310-8731107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
61, 156
               

               
Conread position:
               
17-219
               

               
Cow position:
               
chrX:27515075-27514871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
17-219
               

               
Cow position:
               
chrX:44796600-44796395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
61, 192
               

               
Conread position:
               
17-219
               

               
Cow position:
               
chrX:46793534-46793733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 62
               

               
Conread position:
               
17-220
               

               
Cow position:
               
chrX:37956061-37955859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
61, 19
               

               
Conread position:
               
17-223
               

               
Cow position:
               
chrX:31729653-31729451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
169, 57
               

               
Conread position:
               
17-225
               

               
Cow position:
               
chrX:28837100-28836901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
61, 22
               

               
Conread position:
               
17-226
               

               
Cow position:
               
chrX:27228345-27228132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
17-226
               

               
Cow position:
               
chrX:31436685-31436480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
188, 57
               

               
Conread position:
               
18-150
               

               
Cow position:
               
chrX:43028444-43028315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
18-156
               

               
Cow position:
               
chrX:13135338-13135477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
118, 56
               

               
Conread position:
               
18-182
               

               
Cow position:
               
chrX:11653982-11653821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
18-188
               

               
Cow position:
               
chrX:16007542-16007713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
18-195
               

               
Cow position:
               
chrX:44123464-44123293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
18-214
               

               
Cow position:
               
chrX:36866388-36866192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
60, 109
               

               
Conread position:
               
18-218
               

               
Cow position:
               
chrX:4278904-4279104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
18-219
               

               
Cow position:
               
chrX:30824200-30824000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
178, 61
               

               
Conread position:
               
18-219
               

               
Cow position:
               
chrX:35885517-35885714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
187, 56
               

               
Conread position:
               
18-220
               

               
Cow position:
               
chrX:34238938-34238732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
18-220
               

               
Cow position:
               
chrX:44192227-44192435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
18-223
               

               
Cow position:
               
chrX:19469300-19469497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
189, 55
               

               
Conread position:
               
18-225
               

               
Cow position:
               
chrX:34836857-34837056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
189, 18
               

               
Conread position:
               
18-226
               

               
Cow position:
               
chrX:9650812-9651018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
189, 59
               

               
Conread position:
               
18-237
               

               
Cow position:
               
chrX:29544671-29544882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
174, 22
               

               
Conread position:
               
19-188
               

               
Cow position:
               
chrX:3507778-3507612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
20-185
               

               
Cow position:
               
chrX:36568844-36569008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
58, 70
               

               
Conread position:
               
20-218
               

               
Cow position:
               
chrX:23113505-23113299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 68
               

               
Conread position:
               
20-227
               

               
Cow position:
               
chrX:28877953-28878169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
21-218
               

               
Cow position:
               
chrX:12309173-12309372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
22-148
               

               
Cow position:
               
chrX:25048891-25049016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
56, 46
               

               
Conread position:
               
22-225
               

               
Cow position:
               
chrX:40035228-40035434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
57, 178
               

               
Conread position:
               
22-226
               

               
Cow position:
               
chrX:36976163-36975958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
23-182
               

               
Cow position:
               
chrX:35543094-35542938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
24-218
               

               
Cow position:
               
chrX:31294360-31294558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
24-220
               

               
Cow position:
               
chrX:22822264-22822058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
24-226
               

               
Cow position:
               
chrX:48474118-48473913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
25-220
               

               
Cow position:
               
chrX:32574524-32574331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
53, 43
               

               
Conread position:
               
25-226
               

               
Cow position:
               
chrX:48532522-48532321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
157, 53
               

               
Conread position:
               
28-217
               

               
Cow position:
               
chrX:11844035-11844226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
28-217
               

               
Cow position:
               
chrX:24105045-24104854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
28-218
               

               
Cow position:
               
chrX:1397830-1397639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
50, 97
               

               
Conread position:
               
28-218
               

               
Cow position:
               
chrX:35620910-35620718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
51, 180
               

               
Conread position:
               
28-219
               

               
Cow position:
               
chrX:19965190-19965383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
30-226
               

               
Cow position:
               
chrX:1055178-1055375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 69
               

               
Conread position:
               
31-219
               

               
Cow position:
               
chrX:44660386-44660576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
47, 177
               

               
Conread position:
               
32-219
               

               
Cow position:
               
chrX:11859335-11859524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 119
               

               
Conread position:
               
34-220
               

               
Cow position:
               
chrX:14275549-14275731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
171, 40
               

               
Conread position:
               
34-226
               

               
Cow position:
               
chrX:21672761-21672560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
35-226
               

               
Cow position:
               
chrX:169343-169539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
43, 151
               

               
Conread position:
               
40-218
               

               
Cow position:
               
chrX:39180040-39180219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
38, 93
               

               
Conread position:
               
43-190
               

               
Cow position:
               
chrX:31252598-31252451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 97
               

               
Conread position:
               
50-243
               

               
Cow position:
               
chrX:16575296-16575101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
61-222
               

               
Cow position:
               
chrX:33204796-33204959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
62-219
               

               
Cow position:
               
chrX:36313835-36313993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 12
               

               
Conread position:
               
64-216
               

               
Cow position:
               
chrX:6278330-6278482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
141, 14
               

               
Conread position:
               
71-217
               

               
Cow position:
               
chrX:37129432-37129284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
72-218
               

               
Cow position:
               
chrX:47342277-47342130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
6, 106
               

               
Conread position:
               
77-218
               

               
Cow position:
               
chrX:31829305-31829447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
88-226
               

               
Cow position:
               
chrX:29501739-29501875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
89-218
               

               
Cow position:
               
chrX:22914898-22915026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
123, 50
               

               
Conread position:
               
94-219
               

               
Cow position:
               
chrX:29680122-29680247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.