Cow genome map

Conread name: Lym2-sn63_D07.f

Conread position: 74-506
Cow position: chr18:10221432-10221007 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 0

Conread position: 74-669
Cow position: chr18:10291983-10292575 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 11

Conread position: 105-588
Cow position: chr18:21175095-21175573 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 7

Conread position: 106-270
Cow position: chr18:19468816-19468980 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 106-416
Cow position: chr18:51653884-51654188 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 106-649
Cow position: chr18:19310451-19310975 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 490, 75

Conread position: 106-666
Cow position: chr18:30844620-30844061 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 490, 110

Conread position: 106-669
Cow position: chr18:13270194-13270749 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 490, 209

Conread position: 106-669
Cow position: chr18:16463362-16462808 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 132

Conread position: 106-669
Cow position: chr18:19461564-19462127 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 490, 209

Conread position: 106-669
Cow position: chr18:29071705-29072264 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 490, 209

Conread position: 106-669
Cow position: chr18:29079021-29079584 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 490, 209

Conread position: 106-669
Cow position: chr18:33406592-33407138 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 490, 213

Conread position: 108-669
Cow position: chr18:10113301-10113836 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 67

Conread position: 109-232
Cow position: chr18:17381100-17381223 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 109-242
Cow position: chr18:22182252-22182119 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 109-293
Cow position: chr18:50835098-50834914 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 109-316
Cow position: chr18:37583170-37582964 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 117, 0

Conread position: 109-373
Cow position: chr18:12201244-12200991 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 176
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 147, 0

Conread position: 109-402
Cow position: chr18:32436814-32436520 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 142
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 86, 23

Conread position: 109-425
Cow position: chr18:36776564-36776878 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 109-433
Cow position: chr18:32164644-32164321 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 109-460
Cow position: chr18:16025373-16025018 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 208

Conread position: 109-468
Cow position: chr18:21797379-21797734 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 229
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 34, 53

Conread position: 109-483
Cow position: chr18:23688459-23688832 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 109-505
Cow position: chr18:11869774-11870169 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 109-516
Cow position: chr18:51690084-51690490 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 109-555
Cow position: chr18:8257363-8257807 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 116
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 92, 0

Conread position: 109-560
Cow position: chr18:44261355-44261791 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 145

Conread position: 109-587
Cow position: chr18:37693000-37692520 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 98

Conread position: 109-593
Cow position: chr18:47985184-47985637 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 461, 22

Conread position: 109-597
Cow position: chr18:28928308-28927831 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 466, 107

Conread position: 109-640
Cow position: chr18:41837803-41837272 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 206

Conread position: 109-646
Cow position: chr18:19355800-19356331 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 206

Conread position: 109-654
Cow position: chr18:5569828-5570353 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 38

Conread position: 109-660
Cow position: chr18:10896481-10897008 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 26

Conread position: 109-662
Cow position: chr18:47745040-47745591 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 206

Conread position: 109-665
Cow position: chr18:5536259-5536813 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 205

Conread position: 109-665
Cow position: chr18:27990044-27990600 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 206

Conread position: 109-666
Cow position: chr18:6733676-6733129 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 36

Conread position: 109-666
Cow position: chr18:14419264-14419822 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 206

Conread position: 109-666
Cow position: chr18:16173326-16172775 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 206

Conread position: 109-666
Cow position: chr18:29863317-29862765 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 206

Conread position: 109-666
Cow position: chr18:40484287-40484841 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 330, 142

Conread position: 109-666
Cow position: chr18:51484878-51485430 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 109-668
Cow position: chr18:37509255-37509804 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 82

Conread position: 109-669
Cow position: chr18:603177-602619 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 206

Conread position: 109-669
Cow position: chr18:14127999-14127442 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 206

Conread position: 109-669
Cow position: chr18:16094172-16094725 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 201

Conread position: 109-669
Cow position: chr18:16226519-16227067 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 463, 45

Conread position: 109-669
Cow position: chr18:16857075-16857632 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 29

Conread position: 109-669
Cow position: chr18:17323667-17324221 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 141

Conread position: 109-669
Cow position: chr18:18215726-18215175 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 206

Conread position: 109-669
Cow position: chr18:24037559-24037004 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 206

Conread position: 109-669
Cow position: chr18:24619716-24620260 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 100

Conread position: 109-669
Cow position: chr18:25354804-25355362 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 39

Conread position: 109-669
Cow position: chr18:25972773-25972231 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 39

Conread position: 109-669
Cow position: chr18:26243171-26242613 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 444, 168

Conread position: 109-669
Cow position: chr18:26335870-26335314 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 45

Conread position: 109-669
Cow position: chr18:27539719-27540269 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 210

Conread position: 109-669
Cow position: chr18:28969002-28968442 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 168

Conread position: 109-669
Cow position: chr18:29797798-29797237 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 206

Conread position: 109-669
Cow position: chr18:30232271-30231723 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 77

Conread position: 109-669
Cow position: chr18:30606983-30607543 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 206

Conread position: 109-669
Cow position: chr18:31139039-31139596 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 206

Conread position: 109-669
Cow position: chr18:33522514-33523079 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 45

Conread position: 109-669
Cow position: chr18:35444081-35443530 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 133

Conread position: 109-669
Cow position: chr18:36511921-36512474 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 488, 210

Conread position: 109-669
Cow position: chr18:36648692-36649222 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 70

Conread position: 109-669
Cow position: chr18:40195400-40195958 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 20

Conread position: 109-669
Cow position: chr18:43464485-43463924 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 206

Conread position: 109-669
Cow position: chr18:50093157-50092601 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 206

Conread position: 109-669
Cow position: chr18:51459554-51458998 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 156

Conread position: 109-669
Cow position: chr18:51602378-51601820 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 206

Conread position: 109-669
Cow position: chr18:51697933-51698486 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 36

Conread position: 109-669
Cow position: chr18:52574402-52574950 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 413, 64

Conread position: 109-669
Cow position: chr18:52629971-52629411 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 152

Conread position: 109-669
Cow position: chr18:54047166-54047726 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 206

Conread position: 109-669
Cow position: chr18:54065785-54065233 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 10

Conread position: 109-669
Cow position: chr18:55554538-55555098 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 206

Conread position: 110-665
Cow position: chr18:52692430-52692972 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 20

Conread position: 110-669
Cow position: chr18:23802311-23802867 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 486, 205

Conread position: 110-669
Cow position: chr18:33271925-33272452 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 33

Conread position: 111-669
Cow position: chr18:17943801-17944363 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 221

Conread position: 113-571
Cow position: chr18:4978566-4978122 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 300
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 123, 212

Conread position: 113-661
Cow position: chr18:38158251-38157710 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 0

Conread position: 113-665
Cow position: chr18:37732980-37733532 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 483, 202

Conread position: 113-669
Cow position: chr18:43430297-43430845 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 483, 167

Conread position: 113-669
Cow position: chr18:43472889-43473433 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 483, 130

Conread position: 114-662
Cow position: chr18:45980794-45981332 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 60

Conread position: 114-669
Cow position: chr18:45978674-45979204 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 482, 96

Conread position: 115-508
Cow position: chr18:51663467-51663845 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 142

Conread position: 117-461
Cow position: chr18:43285010-43284681 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 126

Conread position: 117-662
Cow position: chr18:23659599-23659066 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 104

Conread position: 117-667
Cow position: chr18:30876970-30876432 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 476, 91

Conread position: 117-669
Cow position: chr18:1145249-1144713 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 39

Conread position: 117-669
Cow position: chr18:17335445-17334899 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 37

Conread position: 117-669
Cow position: chr18:33607530-33608079 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 111

Conread position: 117-669
Cow position: chr18:35057321-35057847 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 98

Conread position: 117-669
Cow position: chr18:36771237-36770692 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 146

Conread position: 118-427
Cow position: chr18:7931283-7930988 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 216
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 17, 68

Conread position: 119-412
Cow position: chr18:28084344-28084637 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 196
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 282, 196

Conread position: 119-506
Cow position: chr18:23701501-23701120 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 81

Conread position: 119-523
Cow position: chr18:1022722-1022328 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 28

Conread position: 119-574
Cow position: chr18:15172151-15172582 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 119-582
Cow position: chr18:53872190-53872634 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 32

Conread position: 119-638
Cow position: chr18:33501685-33501167 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 158

Conread position: 119-669
Cow position: chr18:2853498-2852941 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 132

Conread position: 119-669
Cow position: chr18:30035432-30034864 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 196

Conread position: 119-669
Cow position: chr18:40342551-40342000 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 82

Conread position: 120-368
Cow position: chr18:56483365-56483126 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 181
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 160, 0

Conread position: 120-651
Cow position: chr18:52458236-52457717 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 15

Conread position: 120-668
Cow position: chr18:33850828-33851385 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 99

Conread position: 123-669
Cow position: chr18:22791122-22790567 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 208

Conread position: 128-392
Cow position: chr18:10890064-10890317 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 179
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 209, 49

Conread position: 129-405
Cow position: chr18:6866534-6866809 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 193
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 186, 0

Conread position: 131-420
Cow position: chr18:29946764-29947045 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 207
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 46, 23

Conread position: 131-663
Cow position: chr18:55137835-55137291 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 64

Conread position: 131-668
Cow position: chr18:17670661-17670127 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 82

Conread position: 131-669
Cow position: chr18:42080710-42080173 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 14

Conread position: 134-385
Cow position: chr18:51465185-51464933 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 163
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 102, 183

Conread position: 134-437
Cow position: chr18:52462765-52462462 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 203
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 88, 151

Conread position: 135-669
Cow position: chr18:3190057-3190591 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 461, 180

Conread position: 135-669
Cow position: chr18:7049898-7050431 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 189

Conread position: 137-667
Cow position: chr18:6104086-6103575 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 94

Conread position: 139-506
Cow position: chr18:35296468-35296818 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 254
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 91, 0

Conread position: 139-669
Cow position: chr18:42609359-42608829 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 457, 176

Conread position: 141-526
Cow position: chr18:46869475-46869844 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 60

Conread position: 143-395
Cow position: chr18:89467-89724 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 187
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 99, 177

Conread position: 144-662
Cow position: chr18:52656117-52656636 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 52

Conread position: 144-669
Cow position: chr18:55436812-55436287 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 452, 171

Conread position: 157-607
Cow position: chr18:29240656-29241106 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 123

Conread position: 157-669
Cow position: chr18:27193844-27194347 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 59

Conread position: 158-658
Cow position: chr18:52697967-52698459 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 37

Conread position: 163-438
Cow position: chr18:19463121-19462847 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 0

Conread position: 163-669
Cow position: chr18:36223784-36224281 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 53

Conread position: 164-669
Cow position: chr18:51580443-51579938 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 432, 155

Conread position: 165-666
Cow position: chr18:26305616-26306109 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 95

Conread position: 166-436
Cow position: chr18:45905529-45905255 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 150, 79

Conread position: 166-669
Cow position: chr18:32122336-32121837 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 33

Conread position: 167-524
Cow position: chr18:21580209-21579853 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 0

Conread position: 167-669
Cow position: chr18:29059475-29058980 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 44

Conread position: 168-668
Cow position: chr18:51272790-51272294 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 173

Conread position: 171-658
Cow position: chr18:7358768-7359250 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 110

Conread position: 171-669
Cow position: chr18:39002775-39002297 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 407, 121

Conread position: 187-669
Cow position: chr18:16640813-16641294 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 408, 128

Conread position: 191-669
Cow position: chr18:42628733-42629211 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 124

Conread position: 193-583
Cow position: chr18:41957893-41958279 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 263
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 53, 65

Conread position: 194-560
Cow position: chr18:3149366-3148997 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 124

Conread position: 195-535
Cow position: chr18:35884041-35883713 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 220
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 34, 20

Conread position: 195-669
Cow position: chr18:13508695-13508242 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 31

Conread position: 195-669
Cow position: chr18:33157909-33158369 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 373, 124

Conread position: 196-396
Cow position: chr18:24219318-24219120 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 119, 0

Conread position: 198-668
Cow position: chr18:15911494-15911973 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 117

Conread position: 204-665
Cow position: chr18:36135258-36134795 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 113

Conread position: 204-669
Cow position: chr18:4954532-4954994 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 111

Conread position: 204-669
Cow position: chr18:51345670-51346135 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 392, 112

Conread position: 208-640
Cow position: chr18:7963942-7964371 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 85

Conread position: 209-669
Cow position: chr18:3081563-3081111 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 112

Conread position: 209-669
Cow position: chr18:6376928-6377390 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 300
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 184, 8

Conread position: 210-669
Cow position: chr18:43129476-43129913 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 386, 50

Conread position: 211-617
Cow position: chr18:48301077-48300676 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 275
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 18, 46

Conread position: 211-669
Cow position: chr18:7649042-7649493 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 211-669
Cow position: chr18:26845469-26845915 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 20

Conread position: 217-669
Cow position: chr18:38342143-38341700 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 9

Conread position: 219-424
Cow position: chr18:7953041-7953247 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 180, 96

Conread position: 219-667
Cow position: chr18:36477178-36477638 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 76

Conread position: 219-669
Cow position: chr18:11271602-11271158 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 377, 96

Conread position: 219-669
Cow position: chr18:15688399-15688827 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 96

Conread position: 219-669
Cow position: chr18:48548220-48548658 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 96

Conread position: 220-548
Cow position: chr18:23473447-23473125 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 23

Conread position: 221-621
Cow position: chr18:7946103-7946496 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 375, 94

Conread position: 222-669
Cow position: chr18:39494188-39494616 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 376, 93

Conread position: 222-669
Cow position: chr18:54167242-54166809 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 93

Conread position: 223-460
Cow position: chr18:12275505-12275740 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 160
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 25, 34

Conread position: 230-669
Cow position: chr18:33617014-33616575 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 85

Conread position: 237-669
Cow position: chr18:27995094-27995526 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 78

Conread position: 237-669
Cow position: chr18:29586197-29585765 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 78

Conread position: 243-460
Cow position: chr18:31564050-31563839 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 167
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 71, 0

Conread position: 245-483
Cow position: chr18:45909600-45909370 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 245-533
Cow position: chr18:14869381-14869660 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 14, 76

Conread position: 245-643
Cow position: chr18:21236999-21236611 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 261
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 109, 11

Conread position: 245-669
Cow position: chr18:51247092-51247497 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 269
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 337, 11

Conread position: 246-567
Cow position: chr18:51487484-51487167 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 9

Conread position: 246-667
Cow position: chr18:43637814-43638236 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 69

Conread position: 246-669
Cow position: chr18:4369923-4369514 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 68

Conread position: 250-669
Cow position: chr18:27833998-27833580 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 346, 65

Conread position: 251-668
Cow position: chr18:45614207-45614616 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 121

Conread position: 251-669
Cow position: chr18:36778736-36779156 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 66

Conread position: 252-586
Cow position: chr18:12241252-12241575 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 8

Conread position: 255-668
Cow position: chr18:39279898-39279497 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 60

Conread position: 257-669
Cow position: chr18:55022235-55022648 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 59

Conread position: 265-499
Cow position: chr18:6425543-6425322 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 69, 23

Conread position: 265-668
Cow position: chr18:42746666-42747075 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 52

Conread position: 268-619
Cow position: chr18:699581-699238 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 47

Conread position: 269-669
Cow position: chr18:36233428-36233028 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 52

Conread position: 269-669
Cow position: chr18:41498314-41498697 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 254
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 52, 0

Conread position: 269-669
Cow position: chr18:50114835-50114441 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 51

Conread position: 270-568
Cow position: chr18:23879816-23880113 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 204
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 195, 49

Conread position: 281-525
Cow position: chr18:44229770-44229540 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 188
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 53, 38

Conread position: 290-642
Cow position: chr18:19401743-19401394 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 246
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 39, 25

Conread position: 292-651
Cow position: chr18:52685452-52685094 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 225
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 277, 16

Conread position: 295-669
Cow position: chr18:28530981-28530608 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 24

Conread position: 296-669
Cow position: chr18:51692347-51691975 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 232

Conread position: 308-667
Cow position: chr18:30248976-30248619 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 11

Conread position: 317-621
Cow position: chr18:3151066-3150762 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 24

Conread position: 322-669
Cow position: chr18:30716883-30716545 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Show alignments to all cow chromosomes.