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Cow genome map

           
Conread name:
           
Lym2-sn63_D07.f
        

               
Conread position:
               
67-668
               

               
Cow position:
               
chr20:9536116-9536715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 116
               

               
Conread position:
               
74-665
               

               
Cow position:
               
chr20:6135769-6135179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 11
               

               
Conread position:
               
74-669
               

               
Cow position:
               
chr20:753661-754257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 242
               

               
Conread position:
               
75-669
               

               
Cow position:
               
chr20:35093760-35094338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
521, 68
               

               
Conread position:
               
87-669
               

               
Cow position:
               
chr20:28113217-28113796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 53
               

               
Conread position:
               
92-669
               

               
Cow position:
               
chr20:7875639-7875066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
42, 20
               

               
Conread position:
               
106-263
               

               
Cow position:
               
chr20:38957391-38957548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
106-392
               

               
Cow position:
               
chr20:12047746-12048016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
106-438
               

               
Cow position:
               
chr20:25856428-25856748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
106-466
               

               
Cow position:
               
chr20:11331421-11331062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 0
               

               
Conread position:
               
106-665
               

               
Cow position:
               
chr20:29371168-29370607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 209
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chr20:16559279-16558716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 209
               

               
Conread position:
               
108-646
               

               
Cow position:
               
chr20:14211128-14210596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 37
               

               
Conread position:
               
108-667
               

               
Cow position:
               
chr20:23466394-23465843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
488, 207
               

               
Conread position:
               
109-247
               

               
Cow position:
               
chr20:14741443-14741580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
128, 76
               

               
Conread position:
               
109-248
               

               
Cow position:
               
chr20:30737530-30737669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-261
               

               
Cow position:
               
chr20:39234487-39234639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-275
               

               
Cow position:
               
chr20:7810584-7810420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
109-292
               

               
Cow position:
               
chr20:10790712-10790893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
109-293
               

               
Cow position:
               
chr20:33181242-33181055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
135, 152
               

               
Conread position:
               
109-309
               

               
Cow position:
               
chr20:20092555-20092756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
109-328
               

               
Cow position:
               
chr20:30579119-30579337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-330
               

               
Cow position:
               
chr20:3808517-3808297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-332
               

               
Cow position:
               
chr20:14672595-14672814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
95, 19
               

               
Conread position:
               
109-343
               

               
Cow position:
               
chr20:5086081-5085848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-353
               

               
Cow position:
               
chr20:34643273-34643508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
179, 36
               

               
Conread position:
               
109-367
               

               
Cow position:
               
chr20:16106704-16106961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
205, 0
               

               
Conread position:
               
109-367
               

               
Cow position:
               
chr20:33247049-33246800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
109-372
               

               
Cow position:
               
chr20:26738033-26738295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-385
               

               
Cow position:
               
chr20:18092645-18092371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
20, 150
               

               
Conread position:
               
109-421
               

               
Cow position:
               
chr20:6239879-6239580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
109-421
               

               
Cow position:
               
chr20:32164848-32164539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
109-457
               

               
Cow position:
               
chr20:19018148-19017800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 45
               

               
Conread position:
               
109-468
               

               
Cow position:
               
chr20:14757010-14756643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 217
               

               
Conread position:
               
109-488
               

               
Cow position:
               
chr20:13050300-13049910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 54
               

               
Conread position:
               
109-491
               

               
Cow position:
               
chr20:40255919-40256286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 79
               

               
Conread position:
               
109-497
               

               
Cow position:
               
chr20:8099043-8099411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
109-505
               

               
Cow position:
               
chr20:30431527-30431930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 214
               

               
Conread position:
               
109-506
               

               
Cow position:
               
chr20:24904288-24903894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 206
               

               
Conread position:
               
109-517
               

               
Cow position:
               
chr20:20439713-20439306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 206
               

               
Conread position:
               
109-521
               

               
Cow position:
               
chr20:14925386-14924975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-534
               

               
Cow position:
               
chr20:20935874-20935463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
109-560
               

               
Cow position:
               
chr20:15780944-15780504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 209
               

               
Conread position:
               
109-589
               

               
Cow position:
               
chr20:10035483-10035016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
109-618
               

               
Cow position:
               
chr20:30146691-30147196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 119
               

               
Conread position:
               
109-619
               

               
Cow position:
               
chr20:10494454-10494975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
125, 56
               

               
Conread position:
               
109-648
               

               
Cow position:
               
chr20:33731012-33731550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 34
               

               
Conread position:
               
109-651
               

               
Cow position:
               
chr20:41111165-41110630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 76
               

               
Conread position:
               
109-652
               

               
Cow position:
               
chr20:11516785-11516245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 197
               

               
Conread position:
               
109-661
               

               
Cow position:
               
chr20:12435143-12434592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 52
               

               
Conread position:
               
109-665
               

               
Cow position:
               
chr20:826036-826597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 206
               

               
Conread position:
               
109-665
               

               
Cow position:
               
chr20:12827213-12826666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 18
               

               
Conread position:
               
109-665
               

               
Cow position:
               
chr20:28560629-28560083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 39
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr20:6550742-6550185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr20:7597601-7597055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 203
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr20:15090116-15089560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr20:22208877-22209434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr20:23802406-23802963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 121
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr20:34968238-34968813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 296
               

               
Conread position:
               
109-668
               

               
Cow position:
               
chr20:5795030-5795580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 77
               

               
Conread position:
               
109-668
               

               
Cow position:
               
chr20:8970637-8970095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 193
               

               
Conread position:
               
109-668
               

               
Cow position:
               
chr20:12568060-12567512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 168
               

               
Conread position:
               
109-668
               

               
Cow position:
               
chr20:15527001-15527552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 206
               

               
Conread position:
               
109-668
               

               
Cow position:
               
chr20:26053097-26052538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:5503491-5502925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
359, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:5958889-5958329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:6055468-6054907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 105
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:7995287-7994724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:8445669-8446228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 10
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:9223108-9223667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:10404952-10405517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
331, 45
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:12177234-12176674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:12332939-12333484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
497, 72
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:13304042-13303483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:13766148-13766698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 79
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:14327358-14326808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 39
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:14511951-14512513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 143
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:15240779-15240229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 128
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:16515579-16516139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
431, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:17657976-17657417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:18490205-18490763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 46
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:21398075-21398616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 45
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:21719813-21720352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 121
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:22048622-22049182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:22060921-22060362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:22222349-22221792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 212
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:24568013-24567456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 107
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:24660350-24660885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 53
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:28165104-28165651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 78
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:28444091-28443536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 45
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:30384989-30384430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 224
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:30689132-30689687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 24
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:31504586-31505149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 209
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:31846572-31846006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:34459017-34458458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 209
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:35159329-35158775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 101
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:37154711-37154151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 207
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr20:38000746-38001294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 45
               

               
Conread position:
               
110-466
               

               
Cow position:
               
chr20:10921666-10921314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 36
               

               
Conread position:
               
110-656
               

               
Cow position:
               
chr20:774915-775460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
486, 205
               

               
Conread position:
               
113-495
               

               
Cow position:
               
chr20:28887632-28888003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
91, 99
               

               
Conread position:
               
113-501
               

               
Cow position:
               
chr20:35112291-35112676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 138
               

               
Conread position:
               
113-559
               

               
Cow position:
               
chr20:13661085-13660646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 69
               

               
Conread position:
               
113-666
               

               
Cow position:
               
chr20:27876746-27877296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 164
               

               
Conread position:
               
113-667
               

               
Cow position:
               
chr20:15295280-15295831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
483, 41
               

               
Conread position:
               
113-668
               

               
Cow position:
               
chr20:13789332-13789884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
292, 72
               

               
Conread position:
               
113-669
               

               
Cow position:
               
chr20:13506301-13505766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 14
               

               
Conread position:
               
114-669
               

               
Cow position:
               
chr20:22185752-22185205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 77
               

               
Conread position:
               
116-367
               

               
Cow position:
               
chr20:34231607-34231357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 99
               

               
Conread position:
               
116-667
               

               
Cow position:
               
chr20:37271532-37272080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
117-408
               

               
Cow position:
               
chr20:19352806-19352524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
72, 179
               

               
Conread position:
               
117-455
               

               
Cow position:
               
chr20:9589041-9589375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 26
               

               
Conread position:
               
117-668
               

               
Cow position:
               
chr20:18322293-18321761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
479, 164
               

               
Conread position:
               
117-669
               

               
Cow position:
               
chr20:15068078-15068658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 37
               

               
Conread position:
               
119-425
               

               
Cow position:
               
chr20:26999762-27000066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 26
               

               
Conread position:
               
119-433
               

               
Cow position:
               
chr20:7568698-7568390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
268, 31
               

               
Conread position:
               
119-433
               

               
Cow position:
               
chr20:7593185-7592876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
268, 31
               

               
Conread position:
               
119-468
               

               
Cow position:
               
chr20:9996800-9997150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 193
               

               
Conread position:
               
119-504
               

               
Cow position:
               
chr20:7512674-7512291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 157
               

               
Conread position:
               
119-560
               

               
Cow position:
               
chr20:6097398-6096974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
119-560
               

               
Cow position:
               
chr20:19364619-19364190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 117
               

               
Conread position:
               
119-605
               

               
Cow position:
               
chr20:3782438-3781949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 197
               

               
Conread position:
               
119-654
               

               
Cow position:
               
chr20:19155896-19155367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 70
               

               
Conread position:
               
119-663
               

               
Cow position:
               
chr20:9007551-9007026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
479, 66
               

               
Conread position:
               
119-666
               

               
Cow position:
               
chr20:28956685-28956128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 101
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chr20:6259027-6258487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 54
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chr20:14877326-14877871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
477, 162
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chr20:16158355-16157811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
46, 214
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chr20:20731524-20732058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 196
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chr20:24399599-24399050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
477, 196
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chr20:25658758-25658213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 174
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chr20:30479374-30479925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 197
               

               
Conread position:
               
120-534
               

               
Cow position:
               
chr20:21837265-21837689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
41, 29
               

               
Conread position:
               
121-666
               

               
Cow position:
               
chr20:13654066-13653533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 129
               

               
Conread position:
               
122-468
               

               
Cow position:
               
chr20:27896178-27895840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
89, 32
               

               
Conread position:
               
123-669
               

               
Cow position:
               
chr20:4204919-4205457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 196
               

               
Conread position:
               
124-669
               

               
Cow position:
               
chr20:10686003-10686535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
472, 8
               

               
Conread position:
               
128-631
               

               
Cow position:
               
chr20:26075832-26076324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 163
               

               
Conread position:
               
128-669
               

               
Cow position:
               
chr20:1744562-1745104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 34
               

               
Conread position:
               
128-669
               

               
Cow position:
               
chr20:7081541-7081000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
468, 187
               

               
Conread position:
               
129-617
               

               
Cow position:
               
chr20:38654586-38654112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
18, 109
               

               
Conread position:
               
130-668
               

               
Cow position:
               
chr20:36418445-36417924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 58
               

               
Conread position:
               
130-669
               

               
Cow position:
               
chr20:22211240-22211771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
31, 91
               

               
Conread position:
               
131-415
               

               
Cow position:
               
chr20:27994244-27993964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
51, 77
               

               
Conread position:
               
134-643
               

               
Cow position:
               
chr20:20364464-20363925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 182
               

               
Conread position:
               
134-669
               

               
Cow position:
               
chr20:9339295-9339831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 121
               

               
Conread position:
               
137-414
               

               
Cow position:
               
chr20:35145089-35145356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
195, 52
               

               
Conread position:
               
139-621
               

               
Cow position:
               
chr20:17668027-17668511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 43
               

               
Conread position:
               
141-669
               

               
Cow position:
               
chr20:29285320-29284793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
455, 174
               

               
Conread position:
               
141-669
               

               
Cow position:
               
chr20:36311215-36310687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
455, 174
               

               
Conread position:
               
142-669
               

               
Cow position:
               
chr20:6476795-6477312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 148
               

               
Conread position:
               
156-506
               

               
Cow position:
               
chr20:35037075-35036728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
157-368
               

               
Cow position:
               
chr20:8890609-8890820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
124, 159
               

               
Conread position:
               
157-555
               

               
Cow position:
               
chr20:16526601-16526999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 158
               

               
Conread position:
               
157-666
               

               
Cow position:
               
chr20:10839152-10838651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 22
               

               
Conread position:
               
157-669
               

               
Cow position:
               
chr20:14836491-14837001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
439, 158
               

               
Conread position:
               
157-669
               

               
Cow position:
               
chr20:19145936-19146444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 98
               

               
Conread position:
               
160-669
               

               
Cow position:
               
chr20:11635696-11635195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
254, 155
               

               
Conread position:
               
163-669
               

               
Cow position:
               
chr20:9700633-9701125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 40
               

               
Conread position:
               
164-669
               

               
Cow position:
               
chr20:11720001-11720518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 41
               

               
Conread position:
               
164-669
               

               
Cow position:
               
chr20:15117111-15117623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 113
               

               
Conread position:
               
164-669
               

               
Cow position:
               
chr20:22006535-22007031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 55
               

               
Conread position:
               
171-669
               

               
Cow position:
               
chr20:32452037-32451539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
425, 144
               

               
Conread position:
               
172-446
               

               
Cow position:
               
chr20:30546666-30546939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
174-669
               

               
Cow position:
               
chr20:21768291-21767815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 46
               

               
Conread position:
               
180-666
               

               
Cow position:
               
chr20:35128289-35128788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 137
               

               
Conread position:
               
188-386
               

               
Cow position:
               
chr20:18549646-18549843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
188-669
               

               
Cow position:
               
chr20:19441261-19441733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
408, 38
               

               
Conread position:
               
195-669
               

               
Cow position:
               
chr20:10099465-10099939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
401, 124
               

               
Conread position:
               
197-668
               

               
Cow position:
               
chr20:33214430-33213973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
197-669
               

               
Cow position:
               
chr20:28822876-28822420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 34
               

               
Conread position:
               
200-668
               

               
Cow position:
               
chr20:21018664-21019140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 68
               

               
Conread position:
               
200-669
               

               
Cow position:
               
chr20:31784964-31784497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
396, 8
               

               
Conread position:
               
201-565
               

               
Cow position:
               
chr20:2179018-2178655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 18
               

               
Conread position:
               
201-636
               

               
Cow position:
               
chr20:31000546-31000974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
395, 114
               

               
Conread position:
               
204-669
               

               
Cow position:
               
chr20:20779435-20778964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 116
               

               
Conread position:
               
205-468
               

               
Cow position:
               
chr20:19669247-19668985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
193, 110
               

               
Conread position:
               
205-521
               

               
Cow position:
               
chr20:39630259-39629947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
35, 41
               

               
Conread position:
               
205-669
               

               
Cow position:
               
chr20:40423976-40423517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
390, 57
               

               
Conread position:
               
211-668
               

               
Cow position:
               
chr20:17845072-17845534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 110
               

               
Conread position:
               
211-669
               

               
Cow position:
               
chr20:28323836-28324294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
385, 104
               

               
Conread position:
               
212-669
               

               
Cow position:
               
chr20:32938652-32939097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 33
               

               
Conread position:
               
215-667
               

               
Cow position:
               
chr20:34375321-34375783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 102
               

               
Conread position:
               
218-395
               

               
Cow position:
               
chr20:8870932-8870754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
84, 104
               

               
Conread position:
               
218-669
               

               
Cow position:
               
chr20:25330799-25330355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 22
               

               
Conread position:
               
219-660
               

               
Cow position:
               
chr20:40781104-40781545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 100
               

               
Conread position:
               
219-668
               

               
Cow position:
               
chr20:36374834-36374389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 22
               

               
Conread position:
               
219-669
               

               
Cow position:
               
chr20:13619422-13618978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
377, 96
               

               
Conread position:
               
221-480
               

               
Cow position:
               
chr20:20352018-20351772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
222-669
               

               
Cow position:
               
chr20:5077319-5077771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 100
               

               
Conread position:
               
232-669
               

               
Cow position:
               
chr20:30737264-30736823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 83
               

               
Conread position:
               
234-534
               

               
Cow position:
               
chr20:4895976-4895694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
100, 38
               

               
Conread position:
               
237-669
               

               
Cow position:
               
chr20:16942255-16941831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 23
               

               
Conread position:
               
237-669
               

               
Cow position:
               
chr20:40587969-40588398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
359, 76
               

               
Conread position:
               
238-669
               

               
Cow position:
               
chr20:30816683-30817111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 35
               

               
Conread position:
               
239-669
               

               
Cow position:
               
chr20:16584387-16584814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 76
               

               
Conread position:
               
243-565
               

               
Cow position:
               
chr20:14920957-14921266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
243-660
               

               
Cow position:
               
chr20:16974933-16974529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
174, 72
               

               
Conread position:
               
243-669
               

               
Cow position:
               
chr20:1761185-1761609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
353, 72
               

               
Conread position:
               
245-438
               

               
Cow position:
               
chr20:25844941-25844752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
245-646
               

               
Cow position:
               
chr20:15746355-15746749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 11
               

               
Conread position:
               
246-668
               

               
Cow position:
               
chr20:9432765-9433186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 9
               

               
Conread position:
               
250-411
               

               
Cow position:
               
chr20:13055935-13055778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
251-668
               

               
Cow position:
               
chr20:28141136-28141550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
251-669
               

               
Cow position:
               
chr20:39391744-39391326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
345, 64
               

               
Conread position:
               
261-669
               

               
Cow position:
               
chr20:40504314-40503906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
335, 54
               

               
Conread position:
               
262-460
               

               
Cow position:
               
chr20:39876341-39876147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
263-583
               

               
Cow position:
               
chr20:19666983-19667300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 52
               

               
Conread position:
               
268-466
               

               
Cow position:
               
chr20:15436618-15436815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
268-500
               

               
Cow position:
               
chr20:17480348-17480119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 34
               

               
Conread position:
               
269-669
               

               
Cow position:
               
chr20:2881432-2881032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 46
               

               
Conread position:
               
272-669
               

               
Cow position:
               
chr20:14473031-14472637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 47
               

               
Conread position:
               
277-617
               

               
Cow position:
               
chr20:10235031-10235367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 42
               

               
Conread position:
               
277-669
               

               
Cow position:
               
chr20:10760299-10759911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 13
               

               
Conread position:
               
278-668
               

               
Cow position:
               
chr20:34362682-34363065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
179, 41
               

               
Conread position:
               
278-669
               

               
Cow position:
               
chr20:16448896-16449276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 38
               

               
Conread position:
               
282-669
               

               
Cow position:
               
chr20:24445909-24445531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
347, 31
               

               
Conread position:
               
290-669
               

               
Cow position:
               
chr20:12421438-12421062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 29
               

               
Conread position:
               
303-462
               

               
Cow position:
               
chr20:15799593-15799435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
303-667
               

               
Cow position:
               
chr20:42347392-42347033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
269, 16
               

               
Conread position:
               
315-637
               

               
Cow position:
               
chr20:27339301-27339618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
315-669
               

               
Cow position:
               
chr20:10288139-10288499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 164
               

               
Conread position:
               
321-574
               

               
Cow position:
               
chr20:21925777-21925526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 66
               

               
Conread position:
               
321-645
               

               
Cow position:
               
chr20:19340842-19340521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
119, 67
               
Show alignments to all cow chromosomes.