Cow genome map


           Conread name:
           Lym2-sn63_D07.f
        

               Conread position:
               70-669
               

               Cow position:
               chr26:21012313-21012904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 12
               

               Conread position:
               74-439
               

               Cow position:
               chr26:3199568-3199935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               221
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               326, 241
               

               Conread position:
               74-669
               

               Cow position:
               chr26:28706861-28706271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               522, 154
               

               Conread position:
               94-669
               

               Cow position:
               chr26:799899-800472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               581
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 19
               

               Conread position:
               105-668
               

               Cow position:
               chr26:29433460-29434023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               491, 210
               

               Conread position:
               106-508
               

               Cow position:
               chr26:2201759-2202158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               106-536
               

               Cow position:
               chr26:18804141-18803711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 210
               

               Conread position:
               106-537
               

               Cow position:
               chr26:3833263-3833693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               209, 0
               

               Conread position:
               106-577
               

               Cow position:
               chr26:12585309-12584839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               209, 0
               

               Conread position:
               106-590
               

               Cow position:
               chr26:4729095-4728617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               293, 152
               

               Conread position:
               106-668
               

               Cow position:
               chr26:1346765-1346203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               490, 209
               

               Conread position:
               106-669
               

               Cow position:
               chr26:3862849-3862288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               490, 152
               

               Conread position:
               106-669
               

               Cow position:
               chr26:7559387-7558826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               490, 209
               

               Conread position:
               106-669
               

               Cow position:
               chr26:8084055-8084618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               490, 209
               

               Conread position:
               106-669
               

               Cow position:
               chr26:8873075-8873637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               490, 154
               

               Conread position:
               106-669
               

               Cow position:
               chr26:15145723-15146286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               490, 209
               

               Conread position:
               106-669
               

               Cow position:
               chr26:22691619-22692177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               490, 171
               

               Conread position:
               106-669
               

               Cow position:
               chr26:34265193-34265756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               490, 209
               

               Conread position:
               106-669
               

               Cow position:
               chr26:35560832-35560271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               490, 209
               

               Conread position:
               108-669
               

               Cow position:
               chr26:1088415-1088970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               488, 169
               

               Conread position:
               108-669
               

               Cow position:
               chr26:5767120-5767693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               585
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 180
               

               Conread position:
               109-249
               

               Cow position:
               chr26:2348939-2348798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               133, 0
               

               Conread position:
               109-331
               

               Cow position:
               chr26:18800927-18800711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               128, 40
               

               Conread position:
               109-354
               

               Cow position:
               chr26:3157347-3157591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 0
               

               Conread position:
               109-354
               

               Cow position:
               chr26:3537354-3537598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               181
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               206, 0
               

               Conread position:
               109-357
               

               Cow position:
               chr26:46418-46171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               235, 170
               

               Conread position:
               109-360
               

               Cow position:
               chr26:30625381-30625131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               225, 165
               

               Conread position:
               109-378
               

               Cow position:
               chr26:1915574-1915839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               109-404
               

               Cow position:
               chr26:6082892-6082601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               112, 107
               

               Conread position:
               109-422
               

               Cow position:
               chr26:614972-614653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               76, 130
               

               Conread position:
               109-506
               

               Cow position:
               chr26:34015074-34015466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 83
               

               Conread position:
               109-514
               

               Cow position:
               chr26:35191315-35190912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               302, 19
               

               Conread position:
               109-577
               

               Cow position:
               chr26:15199260-15199708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               109-602
               

               Cow position:
               chr26:1637525-1637035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               109-614
               

               Cow position:
               chr26:14488023-14487528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               314, 22
               

               Conread position:
               109-657
               

               Cow position:
               chr26:26286091-26286639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               551
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 207
               

               Conread position:
               109-665
               

               Cow position:
               chr26:386912-387466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               558
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               487, 206
               

               Conread position:
               109-665
               

               Cow position:
               chr26:3186991-3187538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 74
               

               Conread position:
               109-665
               

               Cow position:
               chr26:3689724-3690295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               580
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 22
               

               Conread position:
               109-666
               

               Cow position:
               chr26:6843988-6843433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               559
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               487, 206
               

               Conread position:
               109-666
               

               Cow position:
               chr26:12126319-12125786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 36
               

               Conread position:
               109-666
               

               Cow position:
               chr26:23590927-23591484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               560
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               284, 204
               

               Conread position:
               109-668
               

               Cow position:
               chr26:1390214-1390773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               487, 206
               

               Conread position:
               109-668
               

               Cow position:
               chr26:4324482-4323930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               289, 184
               

               Conread position:
               109-668
               

               Cow position:
               chr26:20218487-20219032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               290, 45
               

               Conread position:
               109-669
               

               Cow position:
               chr26:1343063-1342502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               487, 206
               

               Conread position:
               109-669
               

               Cow position:
               chr26:1620887-1621439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               487, 107
               

               Conread position:
               109-669
               

               Cow position:
               chr26:3564807-3564250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               487, 206
               

               Conread position:
               109-669
               

               Cow position:
               chr26:5679762-5680331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 208
               

               Conread position:
               109-669
               

               Cow position:
               chr26:6429817-6430358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               461, 186
               

               Conread position:
               109-669
               

               Cow position:
               chr26:8739185-8738625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 107
               

               Conread position:
               109-669
               

               Cow position:
               chr26:8885076-8885634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               487, 42
               

               Conread position:
               109-669
               

               Cow position:
               chr26:9069793-9070354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 209
               

               Conread position:
               109-669
               

               Cow position:
               chr26:9558648-9558078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 206
               

               Conread position:
               109-669
               

               Cow position:
               chr26:11369929-11370479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 36
               

               Conread position:
               109-669
               

               Cow position:
               chr26:12662500-12661961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 50
               

               Conread position:
               109-669
               

               Cow position:
               chr26:13183542-13184102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               487, 206
               

               Conread position:
               109-669
               

               Cow position:
               chr26:13806795-13806237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               487, 206
               

               Conread position:
               109-669
               

               Cow position:
               chr26:17327394-17327961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 208
               

               Conread position:
               109-669
               

               Cow position:
               chr26:18857352-18857906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               487, 158
               

               Conread position:
               109-669
               

               Cow position:
               chr26:18928514-18929067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               487, 82
               

               Conread position:
               109-669
               

               Cow position:
               chr26:20019333-20019885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               487, 206
               

               Conread position:
               109-669
               

               Cow position:
               chr26:20496768-20497332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               576
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               289, 102
               

               Conread position:
               109-669
               

               Cow position:
               chr26:23889644-23890195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               290, 186
               

               Conread position:
               109-669
               

               Cow position:
               chr26:26238234-26238792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 45
               

               Conread position:
               109-669
               

               Cow position:
               chr26:26611688-26612248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               487, 206
               

               Conread position:
               109-669
               

               Cow position:
               chr26:30594397-30593848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               487, 206
               

               Conread position:
               109-669
               

               Cow position:
               chr26:35122010-35121451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               487, 206
               

               Conread position:
               109-669
               

               Cow position:
               chr26:35423731-35424289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               487, 82
               

               Conread position:
               110-571
               

               Cow position:
               chr26:9694563-9694105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 0
               

               Conread position:
               111-495
               

               Cow position:
               chr26:17393661-17393283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               112-370
               

               Cow position:
               chr26:16781408-16781667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               6, 205
               

               Conread position:
               113-665
               

               Cow position:
               chr26:9115275-9115826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               554
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               483, 195
               

               Conread position:
               113-668
               

               Cow position:
               chr26:7459728-7459177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               559
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 208
               

               Conread position:
               113-669
               

               Cow position:
               chr26:9100744-9100200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               560
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               286, 107
               

               Conread position:
               113-669
               

               Cow position:
               chr26:17429239-17428674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               432, 202
               

               Conread position:
               114-669
               

               Cow position:
               chr26:22831799-22831247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               557
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               482, 49
               

               Conread position:
               117-329
               

               Cow position:
               chr26:4548848-4549061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               26, 33
               

               Conread position:
               117-452
               

               Cow position:
               chr26:9841158-9840817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               65, 28
               

               Conread position:
               117-491
               

               Cow position:
               chr26:3924239-3923885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               265
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               77, 65
               

               Conread position:
               117-506
               

               Cow position:
               chr26:1885252-1885645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 133
               

               Conread position:
               117-535
               

               Cow position:
               chr26:18877047-18877462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 41
               

               Conread position:
               117-586
               

               Cow position:
               chr26:13773291-13773751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 0
               

               Conread position:
               119-317
               

               Cow position:
               chr26:20186564-20186751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               119-468
               

               Cow position:
               chr26:10490486-10490826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               280, 66
               

               Conread position:
               119-501
               

               Cow position:
               chr26:32534956-32535336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               47, 56
               

               Conread position:
               119-506
               

               Cow position:
               chr26:9835710-9836099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 199
               

               Conread position:
               119-506
               

               Cow position:
               chr26:23810182-23809801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               244
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               72, 23
               

               Conread position:
               119-512
               

               Cow position:
               chr26:11269464-11269846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               321, 92
               

               Conread position:
               119-560
               

               Cow position:
               chr26:34030803-34031228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               119-660
               

               Cow position:
               chr26:17993749-17993225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               345
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               351, 107
               

               Conread position:
               119-669
               

               Cow position:
               chr26:9063329-9063887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               568
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 35
               

               Conread position:
               119-669
               

               Cow position:
               chr26:17288052-17288591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               555
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 196
               

               Conread position:
               119-669
               

               Cow position:
               chr26:19792146-19791621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               554
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 78
               

               Conread position:
               119-669
               

               Cow position:
               chr26:25393028-25393576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               560
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 94
               

               Conread position:
               119-669
               

               Cow position:
               chr26:27987348-27986801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               568
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 147
               

               Conread position:
               122-574
               

               Cow position:
               chr26:10699253-10698819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               271, 60
               

               Conread position:
               122-647
               

               Cow position:
               chr26:22621453-22621972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 20
               

               Conread position:
               122-668
               

               Cow position:
               chr26:1012820-1013344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 90
               

               Conread position:
               122-669
               

               Cow position:
               chr26:6038442-6037889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 38
               

               Conread position:
               123-263
               

               Cow position:
               chr26:35123040-35123180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               123-669
               

               Cow position:
               chr26:24238947-24239490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               558
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 77
               

               Conread position:
               127-398
               

               Cow position:
               chr26:19795303-19795571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               188, 0
               

               Conread position:
               129-305
               

               Cow position:
               chr26:3722702-3722872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               131-559
               

               Cow position:
               chr26:19536319-19536730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               288
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               213, 54
               

               Conread position:
               134-646
               

               Cow position:
               chr26:3027182-3026671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               462, 117
               

               Conread position:
               134-669
               

               Cow position:
               chr26:30786186-30786718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               462, 20
               

               Conread position:
               135-669
               

               Cow position:
               chr26:4440506-4439979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               461, 41
               

               Conread position:
               135-669
               

               Cow position:
               chr26:30725660-30725117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 181
               

               Conread position:
               137-274
               

               Cow position:
               chr26:17799287-17799150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               137-669
               

               Cow position:
               chr26:17169090-17169614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               459, 178
               

               Conread position:
               146-385
               

               Cow position:
               chr26:2670548-2670313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               163-466
               

               Cow position:
               chr26:30753053-30752751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 0
               

               Conread position:
               163-640
               

               Cow position:
               chr26:30586069-30585597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               433, 56
               

               Conread position:
               163-669
               

               Cow position:
               chr26:6476391-6475884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 152
               

               Conread position:
               163-669
               

               Cow position:
               chr26:7677020-7677526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               433, 152
               

               Conread position:
               164-669
               

               Cow position:
               chr26:11297116-11296612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               432, 151
               

               Conread position:
               173-344
               

               Cow position:
               chr26:6870692-6870862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               142, 0
               

               Conread position:
               175-669
               

               Cow position:
               chr26:11537122-11537617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 141
               

               Conread position:
               176-669
               

               Cow position:
               chr26:7022098-7022570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               320
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               35, 24
               

               Conread position:
               178-669
               

               Cow position:
               chr26:8810158-8810644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 135
               

               Conread position:
               179-669
               

               Cow position:
               chr26:3097347-3096857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               417, 136
               

               Conread position:
               192-417
               

               Cow position:
               chr26:20299675-20299464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               193-669
               

               Cow position:
               chr26:8352057-8352507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 49
               

               Conread position:
               195-669
               

               Cow position:
               chr26:6030674-6030211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 120
               

               Conread position:
               197-669
               

               Cow position:
               chr26:16864594-16865067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 120
               

               Conread position:
               198-668
               

               Cow position:
               chr26:26281106-26281569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               303
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               13, 65
               

               Conread position:
               198-669
               

               Cow position:
               chr26:16508387-16508855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 117
               

               Conread position:
               200-668
               

               Cow position:
               chr26:7307307-7307775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 61
               

               Conread position:
               205-669
               

               Cow position:
               chr26:2770814-2770352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 14
               

               Conread position:
               206-466
               

               Cow position:
               chr26:581435-581177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               209-500
               

               Cow position:
               chr26:21578964-21579249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               209-607
               

               Cow position:
               chr26:6836951-6837332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 112
               

               Conread position:
               210-513
               

               Cow position:
               chr26:16905249-16905556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 105
               

               Conread position:
               210-668
               

               Cow position:
               chr26:18519418-18519846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               302
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               387, 66
               

               Conread position:
               210-669
               

               Cow position:
               chr26:4776779-4776320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 21
               

               Conread position:
               211-525
               

               Cow position:
               chr26:20746576-20746868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               211-667
               

               Cow position:
               chr26:9838109-9837653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 20
               

               Conread position:
               212-536
               

               Cow position:
               chr26:16719809-16720135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 177
               

               Conread position:
               212-626
               

               Cow position:
               chr26:6098229-6097821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               384, 95
               

               Conread position:
               216-542
               

               Cow position:
               chr26:10124808-10124498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               218-669
               

               Cow position:
               chr26:33950035-33949589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 119
               

               Conread position:
               220-666
               

               Cow position:
               chr26:15558829-15559275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 101
               

               Conread position:
               226-662
               

               Cow position:
               chr26:14396131-14395693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 94
               

               Conread position:
               237-660
               

               Cow position:
               chr26:27137895-27137472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 21
               

               Conread position:
               237-666
               

               Cow position:
               chr26:14897448-14897877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               359, 82
               

               Conread position:
               237-668
               

               Cow position:
               chr26:21538753-21539183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               359, 78
               

               Conread position:
               245-491
               

               Cow position:
               chr26:25806794-25807034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               245-504
               

               Cow position:
               chr26:887491-887746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               187, 11
               

               Conread position:
               245-653
               

               Cow position:
               chr26:9641958-9642351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               250
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               245-669
               

               Cow position:
               chr26:3705934-3706353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 33
               

               Conread position:
               246-487
               

               Cow position:
               chr26:4806504-4806740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               112, 9
               

               Conread position:
               246-583
               

               Cow position:
               chr26:20185408-20185747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               234
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               141, 69
               

               Conread position:
               251-666
               

               Cow position:
               chr26:799170-798759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 64
               

               Conread position:
               253-669
               

               Cow position:
               chr26:23600653-23600243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               343, 37
               

               Conread position:
               255-639
               

               Cow position:
               chr26:4748784-4748417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               139, 41
               

               Conread position:
               257-654
               

               Cow position:
               chr26:13556830-13556440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               257-669
               

               Cow position:
               chr26:1637035-1636622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 58
               

               Conread position:
               265-669
               

               Cow position:
               chr26:9867956-9867577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 50
               

               Conread position:
               268-562
               

               Cow position:
               chr26:7479645-7479351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               210
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               94, 47
               

               Conread position:
               272-669
               

               Cow position:
               chr26:1673174-1673571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 49
               

               Conread position:
               281-522
               

               Cow position:
               chr26:33535057-33534817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               281-559
               

               Cow position:
               chr26:11335468-11335764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               220
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               16, 41
               

               Conread position:
               284-669
               

               Cow position:
               chr26:18918914-18918528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 35
               

               Conread position:
               296-462
               

               Cow position:
               chr26:23272016-23272182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               30, 19
               

               Conread position:
               307-668
               

               Cow position:
               chr26:30569701-30569332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 12
               
Show alignments to all cow chromosomes.