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Cow genome map

           
Conread name:
           
Lym2-sn63_D07.f
        

               
Conread position:
               
55-658
               

               
Cow position:
               
chr6:26667917-26667314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 31
               

               
Conread position:
               
61-669
               

               
Cow position:
               
chr6:28135866-28136460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
535, 190
               

               
Conread position:
               
74-669
               

               
Cow position:
               
chr6:127005-126413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
522, 150
               

               
Conread position:
               
95-669
               

               
Cow position:
               
chr6:43087448-43086893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 59
               

               
Conread position:
               
102-593
               

               
Cow position:
               
chr6:3987901-3987409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
462, 213
               

               
Conread position:
               
106-247
               

               
Cow position:
               
chr6:57228751-57228892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
106-262
               

               
Cow position:
               
chr6:9587694-9587850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
106-313
               

               
Cow position:
               
chr6:27151282-27151075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
106-317
               

               
Cow position:
               
chr6:11354019-11353803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
75, 48
               

               
Conread position:
               
106-450
               

               
Cow position:
               
chr6:508363-508019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 210
               

               
Conread position:
               
106-499
               

               
Cow position:
               
chr6:21857206-21856824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
106-499
               

               
Cow position:
               
chr6:31941026-31941418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 0
               

               
Conread position:
               
106-506
               

               
Cow position:
               
chr6:65819421-65819024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
106-541
               

               
Cow position:
               
chr6:56451936-56451511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
421, 209
               

               
Conread position:
               
106-560
               

               
Cow position:
               
chr6:39957228-39957683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 48
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chr6:328204-327641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 210
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chr6:11019816-11020380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 214
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chr6:11401479-11402042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 209
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chr6:11453709-11453145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 210
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chr6:12663156-12662611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 0
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chr6:14928618-14929166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 136
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chr6:19103749-19103186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 207
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chr6:21163462-21164025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 209
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chr6:33950001-33949443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chr6:45723986-45723403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 71
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chr6:45975658-45976221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 209
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chr6:57521334-57521897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 209
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chr6:62664934-62665497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 209
               

               
Conread position:
               
108-669
               

               
Cow position:
               
chr6:4274231-4274762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 107
               

               
Conread position:
               
108-669
               

               
Cow position:
               
chr6:42266894-42267438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
488, 120
               

               
Conread position:
               
108-669
               

               
Cow position:
               
chr6:59507386-59507913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 93
               

               
Conread position:
               
109-246
               

               
Cow position:
               
chr6:20350927-20350790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-252
               

               
Cow position:
               
chr6:43049033-43048890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-254
               

               
Cow position:
               
chr6:4388902-4389048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
109-259
               

               
Cow position:
               
chr6:41408567-41408717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
140, 60
               

               
Conread position:
               
109-263
               

               
Cow position:
               
chr6:2453008-2453162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-266
               

               
Cow position:
               
chr6:28399610-28399454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
109-275
               

               
Cow position:
               
chr6:33489892-33489726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-292
               

               
Cow position:
               
chr6:58016510-58016694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
109-300
               

               
Cow position:
               
chr6:1507348-1507157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-300
               

               
Cow position:
               
chr6:49963790-49963599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-305
               

               
Cow position:
               
chr6:11168669-11168864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
109-311
               

               
Cow position:
               
chr6:25357699-25357503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
109-317
               

               
Cow position:
               
chr6:68030341-68030549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-331
               

               
Cow position:
               
chr6:50485622-50485401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-331
               

               
Cow position:
               
chr6:51868151-51868370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
109-337
               

               
Cow position:
               
chr6:30269741-30269513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
79, 207
               

               
Conread position:
               
109-354
               

               
Cow position:
               
chr6:27939196-27939439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-362
               

               
Cow position:
               
chr6:7176403-7176154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
140, 51
               

               
Conread position:
               
109-363
               

               
Cow position:
               
chr6:49761632-49761878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
109-370
               

               
Cow position:
               
chr6:43620893-43621153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-371
               

               
Cow position:
               
chr6:52065959-52065698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-372
               

               
Cow position:
               
chr6:36230364-36230102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-375
               

               
Cow position:
               
chr6:33508412-33508673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
156, 40
               

               
Conread position:
               
109-375
               

               
Cow position:
               
chr6:67173717-67173983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 121
               

               
Conread position:
               
109-384
               

               
Cow position:
               
chr6:6944779-6944511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
202, 10
               

               
Conread position:
               
109-385
               

               
Cow position:
               
chr6:17556508-17556236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
109-386
               

               
Cow position:
               
chr6:13314868-13314592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
191, 92
               

               
Conread position:
               
109-386
               

               
Cow position:
               
chr6:61829391-61829667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-396
               

               
Cow position:
               
chr6:15181317-15181605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
82, 113
               

               
Conread position:
               
109-399
               

               
Cow position:
               
chr6:67448764-67448476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-408
               

               
Cow position:
               
chr6:64425954-64426238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
75, 18
               

               
Conread position:
               
109-409
               

               
Cow position:
               
chr6:6557123-6557422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-426
               

               
Cow position:
               
chr6:6034635-6034323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
109-448
               

               
Cow position:
               
chr6:843666-843327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 207
               

               
Conread position:
               
109-463
               

               
Cow position:
               
chr6:1536867-1537220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-482
               

               
Cow position:
               
chr6:32018953-32018570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 223
               

               
Conread position:
               
109-487
               

               
Cow position:
               
chr6:21588146-21588521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 206
               

               
Conread position:
               
109-489
               

               
Cow position:
               
chr6:16703581-16703218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
62, 173
               

               
Conread position:
               
109-492
               

               
Cow position:
               
chr6:31913013-31912631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-494
               

               
Cow position:
               
chr6:16766678-16766296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 82
               

               
Conread position:
               
109-499
               

               
Cow position:
               
chr6:57383578-57383966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 213
               

               
Conread position:
               
109-501
               

               
Cow position:
               
chr6:35600841-35601230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 116
               

               
Conread position:
               
109-504
               

               
Cow position:
               
chr6:43187271-43187669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
371, 206
               

               
Conread position:
               
109-506
               

               
Cow position:
               
chr6:28172073-28172471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 45
               

               
Conread position:
               
109-506
               

               
Cow position:
               
chr6:40863867-40863478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
109-506
               

               
Cow position:
               
chr6:60332505-60332903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 207
               

               
Conread position:
               
109-506
               

               
Cow position:
               
chr6:64719480-64719873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
109-515
               

               
Cow position:
               
chr6:39999295-39998893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
109-522
               

               
Cow position:
               
chr6:28102706-28102297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
371, 29
               

               
Conread position:
               
109-560
               

               
Cow position:
               
chr6:57856932-57857382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 206
               

               
Conread position:
               
109-562
               

               
Cow position:
               
chr6:1402395-1401950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
109-577
               

               
Cow position:
               
chr6:2186620-2186153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 206
               

               
Conread position:
               
109-586
               

               
Cow position:
               
chr6:33896478-33896018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 102
               

               
Conread position:
               
109-592
               

               
Cow position:
               
chr6:17386685-17387167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-592
               

               
Cow position:
               
chr6:62961064-62961534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
102, 87
               

               
Conread position:
               
109-618
               

               
Cow position:
               
chr6:50571353-50571862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-621
               

               
Cow position:
               
chr6:53543321-53542811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-623
               

               
Cow position:
               
chr6:48947494-48946976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 29
               

               
Conread position:
               
109-628
               

               
Cow position:
               
chr6:51150104-51150623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-641
               

               
Cow position:
               
chr6:55361633-55361101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-645
               

               
Cow position:
               
chr6:33809272-33808736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-649
               

               
Cow position:
               
chr6:52245671-52246196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 29
               

               
Conread position:
               
109-655
               

               
Cow position:
               
chr6:3485257-3484712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 206
               

               
Conread position:
               
109-655
               

               
Cow position:
               
chr6:47154575-47155089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
344, 52
               

               
Conread position:
               
109-662
               

               
Cow position:
               
chr6:12926735-12927283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 123
               

               
Conread position:
               
109-662
               

               
Cow position:
               
chr6:65909486-65910040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 64
               

               
Conread position:
               
109-664
               

               
Cow position:
               
chr6:33466120-33466672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 134
               

               
Conread position:
               
109-665
               

               
Cow position:
               
chr6:7215957-7216501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-665
               

               
Cow position:
               
chr6:39912486-39913040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 33
               

               
Conread position:
               
109-665
               

               
Cow position:
               
chr6:43797739-43797181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 202
               

               
Conread position:
               
109-665
               

               
Cow position:
               
chr6:45901830-45901275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:182378-181823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
370, 27
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:478712-479265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:706160-706713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 206
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:1834157-1834713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 206
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:3272319-3271762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
431, 29
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:6182546-6182008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 61
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:8754292-8753739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 34
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:11289304-11288749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 66
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:15276078-15275522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 206
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:17049535-17050089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 206
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:20553079-20552534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 100
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:24242451-24243004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 36
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:34493837-34494387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:34504359-34503806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 205
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:34843551-34842965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 206
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:40550538-40549982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
428, 206
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:40813527-40814080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 135
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:41192488-41193066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 133
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:41231650-41232183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 163
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:47040047-47039492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 68
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:51717717-51718274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 107
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:55386627-55387169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 63
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:55903251-55903808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 206
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chr6:58030939-58031484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
428, 206
               

               
Conread position:
               
109-667
               

               
Cow position:
               
chr6:8205350-8205906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 64
               

               
Conread position:
               
109-667
               

               
Cow position:
               
chr6:44510252-44510813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 45
               

               
Conread position:
               
109-668
               

               
Cow position:
               
chr6:2875869-2875315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 14
               

               
Conread position:
               
109-668
               

               
Cow position:
               
chr6:9738092-9737543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 171
               

               
Conread position:
               
109-668
               

               
Cow position:
               
chr6:28001229-28000675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 29
               

               
Conread position:
               
109-668
               

               
Cow position:
               
chr6:32420112-32420661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 109
               

               
Conread position:
               
109-668
               

               
Cow position:
               
chr6:46633281-46633831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 130
               

               
Conread position:
               
109-668
               

               
Cow position:
               
chr6:55593232-55593785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:452101-451542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:888719-889277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:1274683-1274136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 45
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:1406983-1406431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 45
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:1796789-1797347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 45
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:2089438-2089980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 45
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:2111237-2110693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 112
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:2367099-2366573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
485, 81
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:3152380-3152934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
377, 107
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:3886343-3885785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:4467799-4468336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 12
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:5946613-5946053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:6471771-6471198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 45
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:6569069-6568512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:6721132-6721694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 135
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:7467488-7466929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 134
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:9234673-9235234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:10044377-10044928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:10598166-10598701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 120
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:11869772-11869214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 181
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:12388292-12387753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 42
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:12997583-12998138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 122
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:13591475-13592036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 23
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:15138011-15137451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:16410220-16410776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 36
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:16418520-16417969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:16645058-16645593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 125
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:17112003-17111444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 151
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:17121548-17122111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 133
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:18803897-18803337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 210
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:19044377-19044912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
467, 47
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:19713072-19712523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 76
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:19718747-19719292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 168
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:20451122-20451678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 163
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:21711868-21712428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:21832498-21831938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
331, 26
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:22043846-22043288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
355, 110
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:22737544-22736984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:23568431-23567886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:23879894-23879337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 168
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:25374946-25374386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:26325037-26324479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 42
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:26771959-26771400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 107
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:27094424-27093865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 82
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:27172991-27173563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 218
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:28065153-28065710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 109
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:28185157-28184599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:35825210-35825759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:35873567-35873013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
399, 185
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:36531435-36531997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 207
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:37387740-37388288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 25
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:39331369-39330810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
451, 36
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:40251635-40251082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 36
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:44146785-44146229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 111
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:45479926-45479366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:45937453-45938001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 45
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:46225800-46225243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 210
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:46764240-46763684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 77
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:46947980-46948534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 116
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:51876927-51877476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 45
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:53537238-53537798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:54472483-54471927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 56
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:55238852-55239412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:55539109-55538553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:59596405-59596977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 36
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:60379325-60379885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 205
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:60876458-60877017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:63177205-63177765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chr6:67553394-67553954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
110-366
               

               
Cow position:
               
chr6:59619239-59619495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 205
               

               
Conread position:
               
110-385
               

               
Cow position:
               
chr6:27526800-27526529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 0
               

               
Conread position:
               
110-415
               

               
Cow position:
               
chr6:47149807-47149501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 33
               

               
Conread position:
               
110-459
               

               
Cow position:
               
chr6:7105365-7105019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 44
               

               
Conread position:
               
110-484
               

               
Cow position:
               
chr6:65875119-65874752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 21
               

               
Conread position:
               
110-669
               

               
Cow position:
               
chr6:7448658-7449217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
486, 205
               

               
Conread position:
               
110-669
               

               
Cow position:
               
chr6:17344363-17344917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 35
               

               
Conread position:
               
113-338
               

               
Cow position:
               
chr6:25180016-25179794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
221, 69
               

               
Conread position:
               
113-417
               

               
Cow position:
               
chr6:53935468-53935173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 35
               

               
Conread position:
               
113-506
               

               
Cow position:
               
chr6:56925899-56926291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 0
               

               
Conread position:
               
113-559
               

               
Cow position:
               
chr6:10681161-10681594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 32
               

               
Conread position:
               
113-659
               

               
Cow position:
               
chr6:10236362-10236894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 106
               

               
Conread position:
               
113-665
               

               
Cow position:
               
chr6:1263328-1263877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 129
               

               
Conread position:
               
113-667
               

               
Cow position:
               
chr6:44017662-44017108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 202
               

               
Conread position:
               
113-669
               

               
Cow position:
               
chr6:224339-223777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 104
               

               
Conread position:
               
113-669
               

               
Cow position:
               
chr6:7138175-7137620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
483, 78
               

               
Conread position:
               
113-669
               

               
Cow position:
               
chr6:11722042-11721494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 202
               

               
Conread position:
               
113-669
               

               
Cow position:
               
chr6:13308230-13307676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
483, 53
               

               
Conread position:
               
113-669
               

               
Cow position:
               
chr6:28160575-28161131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
483, 202
               

               
Conread position:
               
114-452
               

               
Cow position:
               
chr6:2618399-2618061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 201
               

               
Conread position:
               
114-669
               

               
Cow position:
               
chr6:45666760-45666218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
482, 14
               

               
Conread position:
               
115-438
               

               
Cow position:
               
chr6:52249345-52249018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
271, 13
               

               
Conread position:
               
115-669
               

               
Cow position:
               
chr6:35704346-35703809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
325, 45
               

               
Conread position:
               
117-396
               

               
Cow position:
               
chr6:18987310-18987575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
269, 29
               

               
Conread position:
               
117-396
               

               
Cow position:
               
chr6:44097877-44098153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
87, 103
               

               
Conread position:
               
117-403
               

               
Cow position:
               
chr6:52977988-52977711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
241, 86
               

               
Conread position:
               
117-433
               

               
Cow position:
               
chr6:14144192-14144506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
169, 32
               

               
Conread position:
               
117-437
               

               
Cow position:
               
chr6:4903826-4903512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
136, 104
               

               
Conread position:
               
117-457
               

               
Cow position:
               
chr6:28481500-28481842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 68
               

               
Conread position:
               
117-488
               

               
Cow position:
               
chr6:32286724-32287094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 55
               

               
Conread position:
               
117-506
               

               
Cow position:
               
chr6:11639036-11638650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 114
               

               
Conread position:
               
117-658
               

               
Cow position:
               
chr6:9322173-9322703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 92
               

               
Conread position:
               
117-665
               

               
Cow position:
               
chr6:27887082-27887639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 163
               

               
Conread position:
               
117-665
               

               
Cow position:
               
chr6:29484152-29484692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 46
               

               
Conread position:
               
117-669
               

               
Cow position:
               
chr6:14950482-14949938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
412, 143
               

               
Conread position:
               
117-669
               

               
Cow position:
               
chr6:51673942-51674487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 76
               

               
Conread position:
               
118-586
               

               
Cow position:
               
chr6:48881918-48882381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 0
               

               
Conread position:
               
118-665
               

               
Cow position:
               
chr6:53810761-53811283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 30
               

               
Conread position:
               
118-669
               

               
Cow position:
               
chr6:33300836-33301390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 200
               

               
Conread position:
               
119-300
               

               
Cow position:
               
chr6:66188628-66188447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
119-317
               

               
Cow position:
               
chr6:12099686-12099874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
119-382
               

               
Cow position:
               
chr6:26958928-26959196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
104, 75
               

               
Conread position:
               
119-404
               

               
Cow position:
               
chr6:3573964-3574240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
84, 65
               

               
Conread position:
               
119-416
               

               
Cow position:
               
chr6:14264082-14263789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
215, 44
               

               
Conread position:
               
119-428
               

               
Cow position:
               
chr6:3893470-3893158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
166, 140
               

               
Conread position:
               
119-466
               

               
Cow position:
               
chr6:20268140-20267799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
119-467
               

               
Cow position:
               
chr6:1498370-1498720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 240
               

               
Conread position:
               
119-499
               

               
Cow position:
               
chr6:58595234-58594855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
272, 121
               

               
Conread position:
               
119-511
               

               
Cow position:
               
chr6:43778878-43779253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 12
               

               
Conread position:
               
119-568
               

               
Cow position:
               
chr6:60167386-60166958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
124, 89
               

               
Conread position:
               
119-591
               

               
Cow position:
               
chr6:34405473-34405970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 0
               

               
Conread position:
               
119-620
               

               
Cow position:
               
chr6:52240658-52240158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 66
               

               
Conread position:
               
119-649
               

               
Cow position:
               
chr6:15480743-15481263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
425, 50
               

               
Conread position:
               
119-665
               

               
Cow position:
               
chr6:16050120-16049578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
477, 16
               

               
Conread position:
               
119-667
               

               
Cow position:
               
chr6:53672507-53673061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 63
               

               
Conread position:
               
119-668
               

               
Cow position:
               
chr6:39136676-39137212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 162
               

               
Conread position:
               
119-668
               

               
Cow position:
               
chr6:46283926-46283385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 51
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chr6:10570715-10570186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 54
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chr6:14290338-14289800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 112
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chr6:18912562-18912012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
477, 196
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chr6:24623968-24623424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 62
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chr6:34075040-34075598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 29
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chr6:40278231-40278774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
424, 123
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chr6:51733253-51733803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
477, 196
               

               
Conread position:
               
120-311
               

               
Cow position:
               
chr6:52900119-52900310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
100, 91
               

               
Conread position:
               
120-669
               

               
Cow position:
               
chr6:47171241-47171769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
121-370
               

               
Cow position:
               
chr6:65049497-65049264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
121-445
               

               
Cow position:
               
chr6:10612001-10612322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
33, 130
               

               
Conread position:
               
121-621
               

               
Cow position:
               
chr6:10650619-10650135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 33
               

               
Conread position:
               
121-669
               

               
Cow position:
               
chr6:15471639-15471090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
348, 194
               

               
Conread position:
               
122-660
               

               
Cow position:
               
chr6:14897355-14897893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 97
               

               
Conread position:
               
122-669
               

               
Cow position:
               
chr6:1078075-1077543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 23
               

               
Conread position:
               
123-668
               

               
Cow position:
               
chr6:33983992-33984516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 66
               

               
Conread position:
               
123-669
               

               
Cow position:
               
chr6:20581600-20581057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
473, 192
               

               
Conread position:
               
123-669
               

               
Cow position:
               
chr6:28157089-28156551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 28
               

               
Conread position:
               
128-428
               

               
Cow position:
               
chr6:32664921-32664621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
259, 187
               

               
Conread position:
               
128-441
               

               
Cow position:
               
chr6:65941827-65941517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
183, 22
               

               
Conread position:
               
128-508
               

               
Cow position:
               
chr6:19441390-19441749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
38, 59
               

               
Conread position:
               
128-669
               

               
Cow position:
               
chr6:6595605-6596157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 138
               

               
Conread position:
               
128-669
               

               
Cow position:
               
chr6:11389433-11388892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
468, 187
               

               
Conread position:
               
128-669
               

               
Cow position:
               
chr6:47573972-47574507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 29
               

               
Conread position:
               
128-669
               

               
Cow position:
               
chr6:54358337-54357809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 91
               

               
Conread position:
               
129-382
               

               
Cow position:
               
chr6:1109189-1109442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 88
               

               
Conread position:
               
129-477
               

               
Cow position:
               
chr6:55474488-55474842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 185
               

               
Conread position:
               
129-520
               

               
Cow position:
               
chr6:8634123-8633767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
129-522
               

               
Cow position:
               
chr6:6601713-6601335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 73
               

               
Conread position:
               
134-437
               

               
Cow position:
               
chr6:54887404-54887104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 17
               

               
Conread position:
               
134-577
               

               
Cow position:
               
chr6:5096618-5096205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 94
               

               
Conread position:
               
134-669
               

               
Cow position:
               
chr6:6277966-6278502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 189
               

               
Conread position:
               
135-530
               

               
Cow position:
               
chr6:727438-727062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 146
               

               
Conread position:
               
135-669
               

               
Cow position:
               
chr6:9839949-9839408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
137-669
               

               
Cow position:
               
chr6:50637468-50637978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 17
               

               
Conread position:
               
138-669
               

               
Cow position:
               
chr6:47539556-47540097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 16
               

               
Conread position:
               
140-370
               

               
Cow position:
               
chr6:45736670-45736446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
99, 30
               

               
Conread position:
               
141-644
               

               
Cow position:
               
chr6:34030464-34030950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 32
               

               
Conread position:
               
142-421
               

               
Cow position:
               
chr6:653602-653325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
145-669
               

               
Cow position:
               
chr6:16593148-16593667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
451, 132
               

               
Conread position:
               
148-457
               

               
Cow position:
               
chr6:34236894-34236582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
179, 167
               

               
Conread position:
               
149-669
               

               
Cow position:
               
chr6:50526713-50527224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 33
               

               
Conread position:
               
157-281
               

               
Cow position:
               
chr6:8951050-8950926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
157-400
               

               
Cow position:
               
chr6:17773196-17773438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
157-669
               

               
Cow position:
               
chr6:12971606-12972118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
439, 158
               

               
Conread position:
               
163-526
               

               
Cow position:
               
chr6:8382156-8382517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
163-642
               

               
Cow position:
               
chr6:63715060-63714581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
433, 152
               

               
Conread position:
               
163-668
               

               
Cow position:
               
chr6:53461963-53461450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 152
               

               
Conread position:
               
163-669
               

               
Cow position:
               
chr6:15783777-15783274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 152
               

               
Conread position:
               
163-669
               

               
Cow position:
               
chr6:57329494-57330000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
433, 152
               

               
Conread position:
               
164-669
               

               
Cow position:
               
chr6:65848153-65847649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 49
               

               
Conread position:
               
166-669
               

               
Cow position:
               
chr6:34017503-34017001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
430, 149
               

               
Conread position:
               
168-386
               

               
Cow position:
               
chr6:41233145-41233361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
52, 48
               

               
Conread position:
               
168-669
               

               
Cow position:
               
chr6:20216175-20215674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
428, 147
               

               
Conread position:
               
178-669
               

               
Cow position:
               
chr6:19059509-19059995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
334, 52
               

               
Conread position:
               
179-669
               

               
Cow position:
               
chr6:37216875-37217361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
417, 53
               

               
Conread position:
               
181-668
               

               
Cow position:
               
chr6:25408455-25407965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
366, 37
               

               
Conread position:
               
186-665
               

               
Cow position:
               
chr6:62333510-62333033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
409, 275
               

               
Conread position:
               
189-666
               

               
Cow position:
               
chr6:40975410-40975883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 128
               

               
Conread position:
               
190-662
               

               
Cow position:
               
chr6:42897430-42897905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 125
               

               
Conread position:
               
191-514
               

               
Cow position:
               
chr6:48873080-48872761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
191-669
               

               
Cow position:
               
chr6:1245677-1245199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
405, 124
               

               
Conread position:
               
191-669
               

               
Cow position:
               
chr6:43790124-43789645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
405, 124
               

               
Conread position:
               
192-669
               

               
Cow position:
               
chr6:10266882-10266413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 85
               

               
Conread position:
               
193-669
               

               
Cow position:
               
chr6:39897817-39897341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
403, 122
               

               
Conread position:
               
195-482
               

               
Cow position:
               
chr6:25783166-25782880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
198, 148
               

               
Conread position:
               
195-660
               

               
Cow position:
               
chr6:58036530-58036995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 16
               

               
Conread position:
               
196-669
               

               
Cow position:
               
chr6:39080166-39080639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
400, 119
               

               
Conread position:
               
197-669
               

               
Cow position:
               
chr6:2581853-2582332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 118
               

               
Conread position:
               
199-667
               

               
Cow position:
               
chr6:15991688-15991227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 19
               

               
Conread position:
               
200-331
               

               
Cow position:
               
chr6:61632386-61632516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
200-468
               

               
Cow position:
               
chr6:50624684-50624965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
158, 115
               

               
Conread position:
               
200-668
               

               
Cow position:
               
chr6:18571307-18570852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 38
               

               
Conread position:
               
201-329
               

               
Cow position:
               
chr6:14064444-14064316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
5, 115
               

               
Conread position:
               
202-394
               

               
Cow position:
               
chr6:32419525-32419720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
156, 113
               

               
Conread position:
               
205-487
               

               
Cow position:
               
chr6:236034-235759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
35, 5
               

               
Conread position:
               
207-669
               

               
Cow position:
               
chr6:40031297-40031766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 33
               

               
Conread position:
               
209-540
               

               
Cow position:
               
chr6:38801930-38801600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
5, 60
               

               
Conread position:
               
210-418
               

               
Cow position:
               
chr6:27942092-27942297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
193, 105
               

               
Conread position:
               
210-513
               

               
Cow position:
               
chr6:11161125-11160828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
124, 105
               

               
Conread position:
               
210-574
               

               
Cow position:
               
chr6:49392078-49391712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 106
               

               
Conread position:
               
210-669
               

               
Cow position:
               
chr6:29085121-29084678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 106
               

               
Conread position:
               
210-669
               

               
Cow position:
               
chr6:38988564-38988103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 88
               

               
Conread position:
               
211-414
               

               
Cow position:
               
chr6:59603561-59603358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
39, 111
               

               
Conread position:
               
211-650
               

               
Cow position:
               
chr6:57681267-57680832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 36
               

               
Conread position:
               
211-669
               

               
Cow position:
               
chr6:7191348-7190902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 65
               

               
Conread position:
               
211-669
               

               
Cow position:
               
chr6:26829791-26830249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
385, 104
               

               
Conread position:
               
211-669
               

               
Cow position:
               
chr6:47380947-47381392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 104
               

               
Conread position:
               
213-617
               

               
Cow position:
               
chr6:31150722-31151139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 101
               

               
Conread position:
               
217-668
               

               
Cow position:
               
chr6:40158271-40157815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 9
               

               
Conread position:
               
218-669
               

               
Cow position:
               
chr6:33451115-33451543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
378, 88
               

               
Conread position:
               
218-669
               

               
Cow position:
               
chr6:55169755-55170192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 8
               

               
Conread position:
               
219-424
               

               
Cow position:
               
chr6:47848653-47848451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
177, 37
               

               
Conread position:
               
219-665
               

               
Cow position:
               
chr6:14199317-14199759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
377, 97
               

               
Conread position:
               
219-665
               

               
Cow position:
               
chr6:56842293-56842740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 103
               

               
Conread position:
               
220-538
               

               
Cow position:
               
chr6:44871895-44872216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
55, 99
               

               
Conread position:
               
220-662
               

               
Cow position:
               
chr6:22225716-22225286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 62
               

               
Conread position:
               
220-668
               

               
Cow position:
               
chr6:65859083-65858635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 96
               

               
Conread position:
               
220-669
               

               
Cow position:
               
chr6:1887523-1887075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 244
               

               
Conread position:
               
220-669
               

               
Cow position:
               
chr6:39092890-39093338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 95
               

               
Conread position:
               
220-669
               

               
Cow position:
               
chr6:53739561-53740013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 97
               

               
Conread position:
               
221-548
               

               
Cow position:
               
chr6:54376835-54377150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
221-668
               

               
Cow position:
               
chr6:37761528-37761959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
353, 94
               

               
Conread position:
               
221-669
               

               
Cow position:
               
chr6:539411-539857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 35
               

               
Conread position:
               
225-666
               

               
Cow position:
               
chr6:38873250-38872809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
371, 90
               

               
Conread position:
               
226-662
               

               
Cow position:
               
chr6:8535515-8535084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
370, 51
               

               
Conread position:
               
226-669
               

               
Cow position:
               
chr6:38917761-38917317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
370, 89
               

               
Conread position:
               
236-669
               

               
Cow position:
               
chr6:47382884-47383307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
237-468
               

               
Cow position:
               
chr6:32269959-32269738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
237-500
               

               
Cow position:
               
chr6:68047628-68047371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
161, 78
               

               
Conread position:
               
237-637
               

               
Cow position:
               
chr6:58915046-58914651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 104
               

               
Conread position:
               
237-669
               

               
Cow position:
               
chr6:2606755-2607186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
333, 40
               

               
Conread position:
               
237-669
               

               
Cow position:
               
chr6:31549269-31548857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
359, 78
               

               
Conread position:
               
238-669
               

               
Cow position:
               
chr6:10536688-10536257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
358, 77
               

               
Conread position:
               
240-514
               

               
Cow position:
               
chr6:54758647-54758921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
195, 20
               

               
Conread position:
               
244-461
               

               
Cow position:
               
chr6:10602738-10602518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
90, 71
               

               
Conread position:
               
244-546
               

               
Cow position:
               
chr6:3982188-3982500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
73, 151
               

               
Conread position:
               
245-513
               

               
Cow position:
               
chr6:1524947-1525211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
160, 15
               

               
Conread position:
               
245-524
               

               
Cow position:
               
chr6:31270683-31270948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
157, 11
               

               
Conread position:
               
245-525
               

               
Cow position:
               
chr6:44920725-44920998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
71, 11
               

               
Conread position:
               
245-557
               

               
Cow position:
               
chr6:23529247-23529555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
160, 10
               

               
Conread position:
               
245-565
               

               
Cow position:
               
chr6:43054177-43053859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
144, 90
               

               
Conread position:
               
245-639
               

               
Cow position:
               
chr6:58951181-58950798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
325, 32
               

               
Conread position:
               
245-669
               

               
Cow position:
               
chr6:55945127-55944721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
351, 35
               

               
Conread position:
               
245-669
               

               
Cow position:
               
chr6:65011462-65011869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
250-546
               

               
Cow position:
               
chr6:35206436-35206140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
91, 20
               

               
Conread position:
               
251-546
               

               
Cow position:
               
chr6:32271901-32271612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
251-668
               

               
Cow position:
               
chr6:828514-828113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 64
               

               
Conread position:
               
251-669
               

               
Cow position:
               
chr6:54900393-54900811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
345, 65
               

               
Conread position:
               
252-512
               

               
Cow position:
               
chr6:49442247-49442508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 135
               

               
Conread position:
               
254-668
               

               
Cow position:
               
chr6:68322931-68322532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
104, 186
               

               
Conread position:
               
255-666
               

               
Cow position:
               
chr6:7175344-7174931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 70
               

               
Conread position:
               
259-649
               

               
Cow position:
               
chr6:54979217-54978827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
337, 56
               

               
Conread position:
               
259-669
               

               
Cow position:
               
chr6:28400957-28401367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 57
               

               
Conread position:
               
265-564
               

               
Cow position:
               
chr6:16699455-16699749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
268-506
               

               
Cow position:
               
chr6:55041846-55041613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
268-557
               

               
Cow position:
               
chr6:2545514-2545799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
268-668
               

               
Cow position:
               
chr6:60455985-60456402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 13
               

               
Conread position:
               
268-669
               

               
Cow position:
               
chr6:17456062-17456442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
308, 51
               

               
Conread position:
               
268-669
               

               
Cow position:
               
chr6:50973966-50973582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 47
               

               
Conread position:
               
273-662
               

               
Cow position:
               
chr6:57308550-57308936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
273-669
               

               
Cow position:
               
chr6:4389039-4389434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 46
               

               
Conread position:
               
276-669
               

               
Cow position:
               
chr6:18667043-18666643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
54, 39
               

               
Conread position:
               
277-506
               

               
Cow position:
               
chr6:39997755-39997527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
57, 42
               

               
Conread position:
               
277-669
               

               
Cow position:
               
chr6:9468858-9469233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 38
               

               
Conread position:
               
284-661
               

               
Cow position:
               
chr6:48568156-48567781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
297-655
               

               
Cow position:
               
chr6:32125295-32125656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 18
               

               
Conread position:
               
303-466
               

               
Cow position:
               
chr6:25374029-25373867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
305-585
               

               
Cow position:
               
chr6:17415287-17415012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 14
               

               
Conread position:
               
310-669
               

               
Cow position:
               
chr6:24988404-24988763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 14
               

               
Conread position:
               
321-665
               

               
Cow position:
               
chr6:46390928-46391263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 38
               

               
Conread position:
               
321-669
               

               
Cow position:
               
chr6:13740928-13741270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 66
               

               
Conread position:
               
321-669
               

               
Cow position:
               
chr6:29085615-29085966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               
Show alignments to all cow chromosomes.