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Cow genome map

           
Conread name:
           
Lym2-sn63_D07.f
        

               
Conread position:
               
73-665
               

               
Cow position:
               
chrX:5392612-5392020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
523, 242
               

               
Conread position:
               
74-665
               

               
Cow position:
               
chrX:39713515-39714106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
522, 241
               

               
Conread position:
               
74-669
               

               
Cow position:
               
chrX:6580899-6581493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
522, 241
               

               
Conread position:
               
87-669
               

               
Cow position:
               
chrX:13928765-13928194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 228
               

               
Conread position:
               
106-252
               

               
Cow position:
               
chrX:21892504-21892650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
106-255
               

               
Cow position:
               
chrX:28766112-28765962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
106-340
               

               
Cow position:
               
chrX:24446950-24447186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
220, 0
               

               
Conread position:
               
106-367
               

               
Cow position:
               
chrX:15175553-15175296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
106-372
               

               
Cow position:
               
chrX:26618120-26618385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
209, 0
               

               
Conread position:
               
106-385
               

               
Cow position:
               
chrX:24346045-24346323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 0
               

               
Conread position:
               
106-410
               

               
Cow position:
               
chrX:22308570-22308277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
226, 39
               

               
Conread position:
               
106-421
               

               
Cow position:
               
chrX:12651821-12651511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
287, 26
               

               
Conread position:
               
106-498
               

               
Cow position:
               
chrX:11499778-11499396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
106-501
               

               
Cow position:
               
chrX:33583689-33584078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
44, 97
               

               
Conread position:
               
106-536
               

               
Cow position:
               
chrX:10059462-10059890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
106-553
               

               
Cow position:
               
chrX:19608671-19609118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 210
               

               
Conread position:
               
106-621
               

               
Cow position:
               
chrX:2813487-2812971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 210
               

               
Conread position:
               
106-621
               

               
Cow position:
               
chrX:11409338-11408823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 209
               

               
Conread position:
               
106-667
               

               
Cow position:
               
chrX:17610459-17609902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 209
               

               
Conread position:
               
106-668
               

               
Cow position:
               
chrX:11074188-11073651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 120
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:3082138-3081572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 149
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:5332435-5331878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 48
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:5334817-5334260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 48
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:5647108-5646545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 209
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:12359884-12360447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 209
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:14782349-14781787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 209
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:18488718-18488155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 209
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:19474152-19473601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 171
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:24413023-24413589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 216
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:24468127-24467566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 150
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:25405374-25404798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 43
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:26275135-26275698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 161
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:26760572-26760009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 209
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:27423275-27422722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
414, 48
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:27758705-27759266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 204
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:28587968-28588530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 39
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:29225474-29226037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 209
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:29908206-29907643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
465, 209
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:30172710-30172149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 209
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:30199996-30199433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 209
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:36729380-36729943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 209
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:39560663-39560093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 209
               

               
Conread position:
               
106-669
               

               
Cow position:
               
chrX:39731141-39730581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 171
               

               
Conread position:
               
107-526
               

               
Cow position:
               
chrX:40496583-40496163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
227, 21
               

               
Conread position:
               
107-668
               

               
Cow position:
               
chrX:4995613-4996173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 67
               

               
Conread position:
               
107-669
               

               
Cow position:
               
chrX:44053813-44054363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 171
               

               
Conread position:
               
108-669
               

               
Cow position:
               
chrX:4481965-4482510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
108-669
               

               
Cow position:
               
chrX:17158809-17158269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 46
               

               
Conread position:
               
109-223
               

               
Cow position:
               
chrX:21645789-21645675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-224
               

               
Cow position:
               
chrX:22616372-22616257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-244
               

               
Cow position:
               
chrX:37815179-37815312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
109-247
               

               
Cow position:
               
chrX:2933003-2932865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-256
               

               
Cow position:
               
chrX:5294348-5294200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
109-262
               

               
Cow position:
               
chrX:24928343-24928190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-275
               

               
Cow position:
               
chrX:20741852-20742018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-275
               

               
Cow position:
               
chrX:24734663-24734832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
137, 54
               

               
Conread position:
               
109-278
               

               
Cow position:
               
chrX:10438906-10438739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 45
               

               
Conread position:
               
109-281
               

               
Cow position:
               
chrX:30435619-30435446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
109-293
               

               
Cow position:
               
chrX:24321629-24321444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
109-293
               

               
Cow position:
               
chrX:29930393-29930209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-317
               

               
Cow position:
               
chrX:5375278-5375070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-331
               

               
Cow position:
               
chrX:9764072-9763851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-331
               

               
Cow position:
               
chrX:16803868-16803647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-352
               

               
Cow position:
               
chrX:7120606-7120848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-357
               

               
Cow position:
               
chrX:39697765-39698007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
56, 120
               

               
Conread position:
               
109-366
               

               
Cow position:
               
chrX:9095642-9095897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
109-370
               

               
Cow position:
               
chrX:26622809-26622563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
221, 91
               

               
Conread position:
               
109-372
               

               
Cow position:
               
chrX:6201532-6201788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
95, 7
               

               
Conread position:
               
109-372
               

               
Cow position:
               
chrX:34094705-34094967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-385
               

               
Cow position:
               
chrX:20792138-20792410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
73, 189
               

               
Conread position:
               
109-385
               

               
Cow position:
               
chrX:33763144-33763419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-388
               

               
Cow position:
               
chrX:28058321-28058602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 206
               

               
Conread position:
               
109-392
               

               
Cow position:
               
chrX:3155582-3155305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
133, 36
               

               
Conread position:
               
109-398
               

               
Cow position:
               
chrX:15122161-15121872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
263, 10
               

               
Conread position:
               
109-399
               

               
Cow position:
               
chrX:32329208-32329499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
210, 121
               

               
Conread position:
               
109-400
               

               
Cow position:
               
chrX:45374108-45373820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
109-405
               

               
Cow position:
               
chrX:25817818-25817528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
149, 106
               

               
Conread position:
               
109-409
               

               
Cow position:
               
chrX:7484806-7485105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-411
               

               
Cow position:
               
chrX:27070846-27071143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
100, 19
               

               
Conread position:
               
109-414
               

               
Cow position:
               
chrX:22493033-22493335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
256, 45
               

               
Conread position:
               
109-416
               

               
Cow position:
               
chrX:22838271-22838577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-417
               

               
Cow position:
               
chrX:30964987-30964680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-418
               

               
Cow position:
               
chrX:31803888-31804193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
70, 180
               

               
Conread position:
               
109-420
               

               
Cow position:
               
chrX:8400550-8400255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
109-423
               

               
Cow position:
               
chrX:28606086-28605784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
109-426
               

               
Cow position:
               
chrX:43074882-43075190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-427
               

               
Cow position:
               
chrX:3144628-3144945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
280, 205
               

               
Conread position:
               
109-427
               

               
Cow position:
               
chrX:16085659-16085342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-427
               

               
Cow position:
               
chrX:17290182-17290497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 75
               

               
Conread position:
               
109-433
               

               
Cow position:
               
chrX:18023993-18023669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 206
               

               
Conread position:
               
109-445
               

               
Cow position:
               
chrX:28647271-28646945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 131
               

               
Conread position:
               
109-458
               

               
Cow position:
               
chrX:5361009-5361357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-466
               

               
Cow position:
               
chrX:20357000-20356640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 210
               

               
Conread position:
               
109-466
               

               
Cow position:
               
chrX:26230759-26230403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-468
               

               
Cow position:
               
chrX:620265-619902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 206
               

               
Conread position:
               
109-468
               

               
Cow position:
               
chrX:27595227-27594868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-483
               

               
Cow position:
               
chrX:5365598-5365227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 207
               

               
Conread position:
               
109-486
               

               
Cow position:
               
chrX:33685130-33685506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-497
               

               
Cow position:
               
chrX:29892086-29892472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-499
               

               
Cow position:
               
chrX:8482447-8482827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
109-499
               

               
Cow position:
               
chrX:8590579-8590970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 208
               

               
Conread position:
               
109-499
               

               
Cow position:
               
chrX:16808815-16808426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-506
               

               
Cow position:
               
chrX:21793589-21793986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-506
               

               
Cow position:
               
chrX:29916347-29915951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 207
               

               
Conread position:
               
109-506
               

               
Cow position:
               
chrX:35024068-35024450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 86
               

               
Conread position:
               
109-508
               

               
Cow position:
               
chrX:12345895-12346293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-510
               

               
Cow position:
               
chrX:21389577-21389978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
397, 206
               

               
Conread position:
               
109-510
               

               
Cow position:
               
chrX:21414866-21415266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-513
               

               
Cow position:
               
chrX:22539034-22538631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-522
               

               
Cow position:
               
chrX:29700942-29700543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 24
               

               
Conread position:
               
109-524
               

               
Cow position:
               
chrX:11461994-11461585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 59
               

               
Conread position:
               
109-530
               

               
Cow position:
               
chrX:25573351-25573763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
384, 205
               

               
Conread position:
               
109-535
               

               
Cow position:
               
chrX:36691837-36692258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 36
               

               
Conread position:
               
109-536
               

               
Cow position:
               
chrX:29099418-29099840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 22
               

               
Conread position:
               
109-540
               

               
Cow position:
               
chrX:15977954-15977527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 0
               

               
Conread position:
               
109-541
               

               
Cow position:
               
chrX:41791720-41791282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 210
               

               
Conread position:
               
109-546
               

               
Cow position:
               
chrX:12307763-12307322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 206
               

               
Conread position:
               
109-555
               

               
Cow position:
               
chrX:13205954-13206396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
109-559
               

               
Cow position:
               
chrX:16525789-16526237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-560
               

               
Cow position:
               
chrX:24588735-24588290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
109-562
               

               
Cow position:
               
chrX:14125245-14124795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-567
               

               
Cow position:
               
chrX:32145256-32144812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
109-579
               

               
Cow position:
               
chrX:12465037-12465499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
452, 101
               

               
Conread position:
               
109-582
               

               
Cow position:
               
chrX:22077341-22076871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
109-583
               

               
Cow position:
               
chrX:20503642-20504118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 109
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chrX:27754427-27754903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 206
               

               
Conread position:
               
109-589
               

               
Cow position:
               
chrX:30135343-30134876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
351, 208
               

               
Conread position:
               
109-592
               

               
Cow position:
               
chrX:22869818-22870292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 205
               

               
Conread position:
               
109-621
               

               
Cow position:
               
chrX:21832885-21833380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 99
               

               
Conread position:
               
109-621
               

               
Cow position:
               
chrX:39548398-39548909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-630
               

               
Cow position:
               
chrX:32643485-32644006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-637
               

               
Cow position:
               
chrX:37404230-37403709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 107
               

               
Conread position:
               
109-639
               

               
Cow position:
               
chrX:11976446-11975918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 45
               

               
Conread position:
               
109-649
               

               
Cow position:
               
chrX:27318230-27318770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 206
               

               
Conread position:
               
109-659
               

               
Cow position:
               
chrX:2382465-2383015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 130
               

               
Conread position:
               
109-661
               

               
Cow position:
               
chrX:5280853-5280302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 168
               

               
Conread position:
               
109-662
               

               
Cow position:
               
chrX:671994-671458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-662
               

               
Cow position:
               
chrX:3649820-3649256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 120
               

               
Conread position:
               
109-662
               

               
Cow position:
               
chrX:21582442-21582994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-662
               

               
Cow position:
               
chrX:29942158-29942702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 89
               

               
Conread position:
               
109-662
               

               
Cow position:
               
chrX:42222770-42222236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 92
               

               
Conread position:
               
109-665
               

               
Cow position:
               
chrX:5248389-5248936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 60
               

               
Conread position:
               
109-665
               

               
Cow position:
               
chrX:9169606-9169059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 132
               

               
Conread position:
               
109-665
               

               
Cow position:
               
chrX:9642433-9641877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-665
               

               
Cow position:
               
chrX:23022317-23022868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 106
               

               
Conread position:
               
109-665
               

               
Cow position:
               
chrX:23572818-23572245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 207
               

               
Conread position:
               
109-665
               

               
Cow position:
               
chrX:40225235-40224688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 107
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chrX:322913-323471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 206
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chrX:1549964-1550503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chrX:2479629-2479071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 210
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chrX:5354301-5353747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 18
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chrX:18950737-18950184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chrX:23387534-23386983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 61
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chrX:23395606-23396162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chrX:27977833-27977275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
331, 109
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chrX:30180925-30180370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 210
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chrX:31201840-31202396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 192
               

               
Conread position:
               
109-666
               

               
Cow position:
               
chrX:38150688-38151244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
456, 33
               

               
Conread position:
               
109-667
               

               
Cow position:
               
chrX:18193689-18194246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-668
               

               
Cow position:
               
chrX:2500631-2500071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 206
               

               
Conread position:
               
109-668
               

               
Cow position:
               
chrX:9899337-9898782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 33
               

               
Conread position:
               
109-668
               

               
Cow position:
               
chrX:18455771-18455226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 36
               

               
Conread position:
               
109-668
               

               
Cow position:
               
chrX:28633455-28632919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 103
               

               
Conread position:
               
109-668
               

               
Cow position:
               
chrX:30164237-30163681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 15
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:2048111-2048662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:2103404-2103964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:2293601-2293041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 210
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:2486633-2486071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 205
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:2559961-2559401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 205
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:2579418-2579978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 205
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:3360820-3361380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 205
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:3372853-3372294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 182
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:3418137-3417579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 205
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:4342750-4343308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:4622954-4622395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:5289685-5289128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 168
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:5320715-5320160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 45
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:5866145-5866705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:6372179-6372740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:6406354-6406905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 51
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:6453696-6454255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:6870565-6870004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:7096458-7097017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 107
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:7551802-7551236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 205
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:8435200-8434645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 45
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:8640787-8641347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:9011330-9011886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:9128054-9128615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 207
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:10445416-10444856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 163
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:10528785-10528215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:10866862-10866308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
340, 89
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:11146335-11145778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 207
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:12145098-12145654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 209
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:12178673-12179233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 211
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:12310386-12309827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 36
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:13406287-13405738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 168
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:14050194-14049635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 110
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:14597845-14598405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:15140532-15139989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 103
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:15151664-15151125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 107
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:15621532-15620973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 186
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:16040680-16040121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:16278655-16279208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 119
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:16360008-16359450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:16465306-16465859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 101
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:16702670-16703230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
319, 210
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:16710955-16711514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:16854366-16853830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 163
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:17054567-17055128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 207
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:17782499-17783058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:17994461-17995018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 29
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:18243992-18244541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 36
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:18656806-18656246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:19398777-19399337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 210
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:20020580-20021136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
484, 45
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:20800788-20801331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 103
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:20953532-20954087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:20999268-20998717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 33
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:21226478-21227033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 105
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:21343394-21343953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:21592292-21592846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 45
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:21685618-21686178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:21767799-21768363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 209
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:22564684-22564128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 149
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:22579388-22578830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 201
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:22810888-22811445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 207
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:22887661-22888217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 121
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:23134590-23135136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 45
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:23280026-23280566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 14
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:23341992-23341434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
429, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:23986249-23986807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:24769857-24769301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
485, 186
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:25289680-25289120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:26442251-26441701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 54
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:26530972-26531518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:26755640-26755070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 72
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:27095136-27095678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 42
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:27304928-27305486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:27591024-27590474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 91
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:28503335-28503895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:28624761-28624200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
438, 151
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:28879582-28879047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 107
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:29849624-29849072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
479, 142
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:29912340-29912898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 38
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:30053469-30052910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:30059886-30060447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 294
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:30159990-30159436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 36
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:30165663-30165117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 129
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:30836386-30836932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:31495736-31496295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 134
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:31728466-31729017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 172
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:31978841-31978282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 42
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:32584931-32584373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 102
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:34761065-34761625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:35532854-35533410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 151
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:36195095-36195651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 156
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:36535730-36535176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 36
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:37080516-37079960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 78
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:37852137-37852698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 36
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:38231268-38230708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:38852162-38852718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 36
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:38961851-38961287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:39185172-39185732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:41156311-41156870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 46
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:42732871-42733425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 206
               

               
Conread position:
               
109-669
               

               
Cow position:
               
chrX:46296661-46297219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 121
               

               
Conread position:
               
110-275
               

               
Cow position:
               
chrX:9227902-9227737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 45
               

               
Conread position:
               
110-342
               

               
Cow position:
               
chrX:27497830-27498060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
128, 38
               

               
Conread position:
               
110-357
               

               
Cow position:
               
chrX:40184073-40184319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 0
               

               
Conread position:
               
110-611
               

               
Cow position:
               
chrX:13031650-13031148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
418, 147
               

               
Conread position:
               
110-628
               

               
Cow position:
               
chrX:5649399-5648869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
42, 53
               

               
Conread position:
               
110-668
               

               
Cow position:
               
chrX:1056387-1055834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 210
               

               
Conread position:
               
110-669
               

               
Cow position:
               
chrX:12289730-12290296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 9
               

               
Conread position:
               
110-669
               

               
Cow position:
               
chrX:16782282-16782839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
486, 21
               

               
Conread position:
               
112-668
               

               
Cow position:
               
chrX:21254781-21255334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
426, 203
               

               
Conread position:
               
113-489
               

               
Cow position:
               
chrX:32064165-32063793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 0
               

               
Conread position:
               
113-654
               

               
Cow position:
               
chrX:30229110-30228570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
483, 202
               

               
Conread position:
               
113-665
               

               
Cow position:
               
chrX:24483359-24482815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 49
               

               
Conread position:
               
113-669
               

               
Cow position:
               
chrX:3465071-3464517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 41
               

               
Conread position:
               
113-669
               

               
Cow position:
               
chrX:7754909-7755460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
483, 182
               

               
Conread position:
               
113-669
               

               
Cow position:
               
chrX:16087120-16086565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
481, 202
               

               
Conread position:
               
113-669
               

               
Cow position:
               
chrX:22612406-22612945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
457, 202
               

               
Conread position:
               
113-669
               

               
Cow position:
               
chrX:23038981-23038438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
483, 136
               

               
Conread position:
               
113-669
               

               
Cow position:
               
chrX:27615817-27616363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
483, 40
               

               
Conread position:
               
113-669
               

               
Cow position:
               
chrX:28518717-28518162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
441, 202
               

               
Conread position:
               
113-669
               

               
Cow position:
               
chrX:29842175-29841610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 113
               

               
Conread position:
               
114-302
               

               
Cow position:
               
chrX:40828102-40827919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
67, 102
               

               
Conread position:
               
114-660
               

               
Cow position:
               
chrX:39556783-39556245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 103
               

               
Conread position:
               
114-665
               

               
Cow position:
               
chrX:28133104-28133665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 95
               

               
Conread position:
               
114-669
               

               
Cow position:
               
chrX:28753332-28752781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
482, 201
               

               
Conread position:
               
115-667
               

               
Cow position:
               
chrX:22125850-22125310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
481, 157
               

               
Conread position:
               
115-669
               

               
Cow position:
               
chrX:24129318-24129874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 13
               

               
Conread position:
               
115-669
               

               
Cow position:
               
chrX:38330389-38330941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
481, 180
               

               
Conread position:
               
117-285
               

               
Cow position:
               
chrX:12996903-12996735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
117-369
               

               
Cow position:
               
chrX:41885170-41884921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
117-395
               

               
Cow position:
               
chrX:20674875-20675151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 0
               

               
Conread position:
               
117-416
               

               
Cow position:
               
chrX:47380497-47380193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
61, 99
               

               
Conread position:
               
117-434
               

               
Cow position:
               
chrX:4767703-4768012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
117-456
               

               
Cow position:
               
chrX:38217987-38218329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
107, 28
               

               
Conread position:
               
117-490
               

               
Cow position:
               
chrX:28557373-28557731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
109, 140
               

               
Conread position:
               
117-501
               

               
Cow position:
               
chrX:29880271-29879890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 73
               

               
Conread position:
               
117-511
               

               
Cow position:
               
chrX:40070596-40070210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 99
               

               
Conread position:
               
117-560
               

               
Cow position:
               
chrX:38228310-38227863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 95
               

               
Conread position:
               
117-585
               

               
Cow position:
               
chrX:30136859-30136392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 91
               

               
Conread position:
               
117-588
               

               
Cow position:
               
chrX:40560533-40560068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 171
               

               
Conread position:
               
117-592
               

               
Cow position:
               
chrX:17889846-17889397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
419, 88
               

               
Conread position:
               
117-665
               

               
Cow position:
               
chrX:17663907-17663363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
453, 43
               

               
Conread position:
               
117-669
               

               
Cow position:
               
chrX:30090035-30089493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 37
               

               
Conread position:
               
117-669
               

               
Cow position:
               
chrX:33803979-33803462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 37
               

               
Conread position:
               
117-669
               

               
Cow position:
               
chrX:36839719-36840262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 118
               

               
Conread position:
               
118-668
               

               
Cow position:
               
chrX:39939745-39939196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 102
               

               
Conread position:
               
118-669
               

               
Cow position:
               
chrX:3211528-3210987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 154
               

               
Conread position:
               
118-669
               

               
Cow position:
               
chrX:34442420-34441888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 15
               

               
Conread position:
               
119-270
               

               
Cow position:
               
chrX:6656009-6655860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
119-396
               

               
Cow position:
               
chrX:4406892-4407167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
196, 0
               

               
Conread position:
               
119-410
               

               
Cow position:
               
chrX:29288007-29288289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
103, 13
               

               
Conread position:
               
119-423
               

               
Cow position:
               
chrX:15993454-15993756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
215, 97
               

               
Conread position:
               
119-511
               

               
Cow position:
               
chrX:24826017-24826404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 61
               

               
Conread position:
               
119-589
               

               
Cow position:
               
chrX:13178598-13178116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 112
               

               
Conread position:
               
119-666
               

               
Cow position:
               
chrX:30455607-30455066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
477, 29
               

               
Conread position:
               
119-667
               

               
Cow position:
               
chrX:1947932-1947402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
477, 76
               

               
Conread position:
               
119-668
               

               
Cow position:
               
chrX:10412966-10412414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 196
               

               
Conread position:
               
119-668
               

               
Cow position:
               
chrX:14801809-14801260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 16
               

               
Conread position:
               
119-668
               

               
Cow position:
               
chrX:31261624-31261078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 66
               

               
Conread position:
               
119-668
               

               
Cow position:
               
chrX:34553767-34554293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 35
               

               
Conread position:
               
119-668
               

               
Cow position:
               
chrX:44193427-44192885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 111
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chrX:1617224-1616679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 32
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chrX:2299895-2300439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 66
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chrX:11744279-11744827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 35
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chrX:16046157-16046706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 23
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chrX:17891555-17892102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 196
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chrX:18222424-18222972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
477, 82
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chrX:24310090-24309560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
510, 70
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chrX:25451347-25451881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
451, 123
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chrX:26436740-26437291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 66
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chrX:29083076-29083637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
349, 196
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chrX:33822101-33822657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 13
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chrX:37117918-37118461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 101
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chrX:41847519-41846975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 9
               

               
Conread position:
               
119-669
               

               
Cow position:
               
chrX:42954452-42954986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
477, 26
               

               
Conread position:
               
120-666
               

               
Cow position:
               
chrX:24292653-24292123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
476, 202
               

               
Conread position:
               
121-274
               

               
Cow position:
               
chrX:21750231-21750081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
121-406
               

               
Cow position:
               
chrX:22809276-22809551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
157, 64
               

               
Conread position:
               
121-629
               

               
Cow position:
               
chrX:23452436-23451926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 196
               

               
Conread position:
               
121-662
               

               
Cow position:
               
chrX:28156552-28157086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 11
               

               
Conread position:
               
121-669
               

               
Cow position:
               
chrX:39559342-39558807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 69
               

               
Conread position:
               
122-352
               

               
Cow position:
               
chrX:19212078-19211849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
58, 136
               

               
Conread position:
               
122-630
               

               
Cow position:
               
chrX:40693720-40693211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 60
               

               
Conread position:
               
122-667
               

               
Cow position:
               
chrX:27451033-27450489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 44
               

               
Conread position:
               
122-669
               

               
Cow position:
               
chrX:7276973-7277492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 32
               

               
Conread position:
               
124-270
               

               
Cow position:
               
chrX:6854704-6854558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
124-460
               

               
Cow position:
               
chrX:21662056-21662385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 96
               

               
Conread position:
               
128-408
               

               
Cow position:
               
chrX:24316840-24317119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 154
               

               
Conread position:
               
128-414
               

               
Cow position:
               
chrX:44874482-44874201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
77, 152
               

               
Conread position:
               
128-427
               

               
Cow position:
               
chrX:150498-150788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
263, 30
               

               
Conread position:
               
128-535
               

               
Cow position:
               
chrX:21063493-21063895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
128-669
               

               
Cow position:
               
chrX:2649332-2648803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 188
               

               
Conread position:
               
128-669
               

               
Cow position:
               
chrX:6766716-6766186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
468, 90
               

               
Conread position:
               
128-669
               

               
Cow position:
               
chrX:15260601-15260060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
468, 187
               

               
Conread position:
               
128-669
               

               
Cow position:
               
chrX:30196316-30196856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
468, 187
               

               
Conread position:
               
128-669
               

               
Cow position:
               
chrX:41734165-41733636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 26
               

               
Conread position:
               
129-540
               

               
Cow position:
               
chrX:30086281-30085879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
117, 16
               

               
Conread position:
               
130-506
               

               
Cow position:
               
chrX:16325509-16325134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 85
               

               
Conread position:
               
130-559
               

               
Cow position:
               
chrX:2008678-2008257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
401, 162
               

               
Conread position:
               
131-463
               

               
Cow position:
               
chrX:21818437-21818129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
311, 79
               

               
Conread position:
               
131-497
               

               
Cow position:
               
chrX:11991133-11990765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 20
               

               
Conread position:
               
131-669
               

               
Cow position:
               
chrX:19929457-19929987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 27
               

               
Conread position:
               
133-548
               

               
Cow position:
               
chrX:24279943-24280340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
134-494
               

               
Cow position:
               
chrX:37134609-37134254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
135-533
               

               
Cow position:
               
chrX:22819103-22819477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
135-669
               

               
Cow position:
               
chrX:6279580-6279051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 55
               

               
Conread position:
               
136-331
               

               
Cow position:
               
chrX:3827693-3827887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
137-384
               

               
Cow position:
               
chrX:2705324-2705078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
59, 85
               

               
Conread position:
               
137-669
               

               
Cow position:
               
chrX:40384083-40384605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 84
               

               
Conread position:
               
137-669
               

               
Cow position:
               
chrX:40601156-40601678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 84
               

               
Conread position:
               
138-660
               

               
Cow position:
               
chrX:22601382-22600863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 92
               

               
Conread position:
               
138-669
               

               
Cow position:
               
chrX:20363116-20362575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 102
               

               
Conread position:
               
140-669
               

               
Cow position:
               
chrX:45400988-45400480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 21
               

               
Conread position:
               
142-388
               

               
Cow position:
               
chrX:42466958-42466719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
50, 9
               

               
Conread position:
               
142-669
               

               
Cow position:
               
chrX:4751330-4750813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
454, 67
               

               
Conread position:
               
143-367
               

               
Cow position:
               
chrX:23222009-23221786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
215, 148
               

               
Conread position:
               
143-565
               

               
Cow position:
               
chrX:35938042-35937631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 88
               

               
Conread position:
               
143-669
               

               
Cow position:
               
chrX:25282462-25281931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
144-536
               

               
Cow position:
               
chrX:23415661-23415270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 171
               

               
Conread position:
               
145-433
               

               
Cow position:
               
chrX:20790505-20790220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
189, 170
               

               
Conread position:
               
146-457
               

               
Cow position:
               
chrX:15040031-15039732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
149-665
               

               
Cow position:
               
chrX:23317370-23316865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 67
               

               
Conread position:
               
156-669
               

               
Cow position:
               
chrX:15113718-15114230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
440, 159
               

               
Conread position:
               
156-669
               

               
Cow position:
               
chrX:31372508-31373022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 159
               

               
Conread position:
               
157-385
               

               
Cow position:
               
chrX:17793902-17794126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
146, 52
               

               
Conread position:
               
157-669
               

               
Cow position:
               
chrX:16021328-16020826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
439, 61
               

               
Conread position:
               
157-669
               

               
Cow position:
               
chrX:41527462-41526952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 25
               

               
Conread position:
               
157-669
               

               
Cow position:
               
chrX:45903212-45903736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 125
               

               
Conread position:
               
160-669
               

               
Cow position:
               
chrX:3406291-3405797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 22
               

               
Conread position:
               
160-669
               

               
Cow position:
               
chrX:5124309-5123800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
436, 155
               

               
Conread position:
               
160-669
               

               
Cow position:
               
chrX:35239922-35240423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
436, 155
               

               
Conread position:
               
163-669
               

               
Cow position:
               
chrX:11565967-11566473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
433, 152
               

               
Conread position:
               
165-365
               

               
Cow position:
               
chrX:5427315-5427514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
166-668
               

               
Cow position:
               
chrX:6543321-6543814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 24
               

               
Conread position:
               
169-550
               

               
Cow position:
               
chrX:33721259-33720872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
101, 152
               

               
Conread position:
               
171-367
               

               
Cow position:
               
chrX:27750309-27750503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
172-434
               

               
Cow position:
               
chrX:8144815-8144562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
173-616
               

               
Cow position:
               
chrX:27628915-27629356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 17
               

               
Conread position:
               
173-669
               

               
Cow position:
               
chrX:13031148-13030652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
423, 142
               

               
Conread position:
               
173-669
               

               
Cow position:
               
chrX:27704662-27705152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
423, 142
               

               
Conread position:
               
176-669
               

               
Cow position:
               
chrX:18898583-18898092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
420, 139
               

               
Conread position:
               
177-669
               

               
Cow position:
               
chrX:11855232-11855728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 211
               

               
Conread position:
               
177-669
               

               
Cow position:
               
chrX:33763411-33763903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
419, 139
               

               
Conread position:
               
179-331
               

               
Cow position:
               
chrX:20580362-20580514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
180-669
               

               
Cow position:
               
chrX:36479565-36479076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
416, 135
               

               
Conread position:
               
182-669
               

               
Cow position:
               
chrX:35609053-35609545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 49
               

               
Conread position:
               
183-666
               

               
Cow position:
               
chrX:24442166-24441694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 132
               

               
Conread position:
               
183-669
               

               
Cow position:
               
chrX:19109968-19109482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
413, 132
               

               
Conread position:
               
187-666
               

               
Cow position:
               
chrX:11950409-11949937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
409, 128
               

               
Conread position:
               
191-668
               

               
Cow position:
               
chrX:2159846-2160323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
405, 128
               

               
Conread position:
               
191-669
               

               
Cow position:
               
chrX:45236547-45237025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
405, 127
               

               
Conread position:
               
193-539
               

               
Cow position:
               
chrX:39293135-39292790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
195-669
               

               
Cow position:
               
chrX:2524647-2524176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 60
               

               
Conread position:
               
195-669
               

               
Cow position:
               
chrX:40268566-40269035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 126
               

               
Conread position:
               
199-403
               

               
Cow position:
               
chrX:13414714-13414514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
135, 12
               

               
Conread position:
               
199-669
               

               
Cow position:
               
chrX:13912181-13912652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 117
               

               
Conread position:
               
200-668
               

               
Cow position:
               
chrX:21190951-21191431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
205, 60
               

               
Conread position:
               
200-669
               

               
Cow position:
               
chrX:8516688-8517163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 31
               

               
Conread position:
               
200-669
               

               
Cow position:
               
chrX:30354484-30354949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 30
               

               
Conread position:
               
202-603
               

               
Cow position:
               
chrX:40581070-40580670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
394, 24
               

               
Conread position:
               
203-669
               

               
Cow position:
               
chrX:28313518-28313984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
393, 112
               

               
Conread position:
               
205-535
               

               
Cow position:
               
chrX:19595024-19595348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
208-586
               

               
Cow position:
               
chrX:12102864-12102490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 32
               

               
Conread position:
               
209-526
               

               
Cow position:
               
chrX:6026597-6026286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
209-667
               

               
Cow position:
               
chrX:2790333-2790794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 51
               

               
Conread position:
               
210-631
               

               
Cow position:
               
chrX:15340754-15340337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 6
               

               
Conread position:
               
211-668
               

               
Cow position:
               
chrX:34518827-34519284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
385, 104
               

               
Conread position:
               
211-669
               

               
Cow position:
               
chrX:7805482-7805935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 103
               

               
Conread position:
               
215-669
               

               
Cow position:
               
chrX:2323812-2324264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
215-669
               

               
Cow position:
               
chrX:17265930-17265493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
381, 100
               

               
Conread position:
               
216-578
               

               
Cow position:
               
chrX:4498742-4499098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
156, 44
               

               
Conread position:
               
217-669
               

               
Cow position:
               
chrX:24006722-24006268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 40
               

               
Conread position:
               
218-669
               

               
Cow position:
               
chrX:26974018-26974469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
378, 97
               

               
Conread position:
               
219-454
               

               
Cow position:
               
chrX:34564204-34564420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
219-536
               

               
Cow position:
               
chrX:25204445-25204760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 95
               

               
Conread position:
               
219-591
               

               
Cow position:
               
chrX:25847910-25848285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 97
               

               
Conread position:
               
219-669
               

               
Cow position:
               
chrX:8529649-8530099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
380, 97
               

               
Conread position:
               
219-669
               

               
Cow position:
               
chrX:15091655-15091210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
377, 96
               

               
Conread position:
               
219-669
               

               
Cow position:
               
chrX:25459530-25459078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 96
               

               
Conread position:
               
220-668
               

               
Cow position:
               
chrX:38935532-38935984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 99
               

               
Conread position:
               
221-669
               

               
Cow position:
               
chrX:5406171-5406618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
375, 95
               

               
Conread position:
               
222-669
               

               
Cow position:
               
chrX:35388807-35388348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 93
               

               
Conread position:
               
228-669
               

               
Cow position:
               
chrX:20032713-20032272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
368, 87
               

               
Conread position:
               
231-668
               

               
Cow position:
               
chrX:37815712-37816147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
365, 86
               

               
Conread position:
               
231-669
               

               
Cow position:
               
chrX:37488850-37489285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 88
               

               
Conread position:
               
236-669
               

               
Cow position:
               
chrX:16688394-16688827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
359, 80
               

               
Conread position:
               
237-523
               

               
Cow position:
               
chrX:31933772-31933489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
244, 78
               

               
Conread position:
               
237-667
               

               
Cow position:
               
chrX:19657624-19658053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
359, 78
               

               
Conread position:
               
237-668
               

               
Cow position:
               
chrX:3096626-3096197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
359, 78
               

               
Conread position:
               
237-668
               

               
Cow position:
               
chrX:7177790-7178212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 90
               

               
Conread position:
               
237-669
               

               
Cow position:
               
chrX:35847352-35847775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 78
               

               
Conread position:
               
239-668
               

               
Cow position:
               
chrX:24174032-24173607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
357, 76
               

               
Conread position:
               
242-462
               

               
Cow position:
               
chrX:13071448-13071230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
242-462
               

               
Cow position:
               
chrX:13092008-13091790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
243-669
               

               
Cow position:
               
chrX:29170209-29169782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 72
               

               
Conread position:
               
244-669
               

               
Cow position:
               
chrX:2274054-2274476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
352, 72
               

               
Conread position:
               
245-631
               

               
Cow position:
               
chrX:35028384-35028762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 43
               

               
Conread position:
               
245-660
               

               
Cow position:
               
chrX:42042250-42041845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
23, 35
               

               
Conread position:
               
245-666
               

               
Cow position:
               
chrX:10440691-10440286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
355, 70
               

               
Conread position:
               
245-668
               

               
Cow position:
               
chrX:16552943-16553353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
319, 11
               

               
Conread position:
               
245-669
               

               
Cow position:
               
chrX:12095451-12095026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 37
               

               
Conread position:
               
245-669
               

               
Cow position:
               
chrX:13069608-13069186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 70
               

               
Conread position:
               
245-669
               

               
Cow position:
               
chrX:13090169-13089747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 70
               

               
Conread position:
               
245-669
               

               
Cow position:
               
chrX:18247492-18247903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
351, 34
               

               
Conread position:
               
246-462
               

               
Cow position:
               
chrX:29927905-29927671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
106, 69
               

               
Conread position:
               
246-669
               

               
Cow position:
               
chrX:30688216-30688624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
350, 10
               

               
Conread position:
               
248-669
               

               
Cow position:
               
chrX:30824785-30825207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 68
               

               
Conread position:
               
249-574
               

               
Cow position:
               
chrX:23697266-23696932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
64, 174
               

               
Conread position:
               
249-669
               

               
Cow position:
               
chrX:30751915-30752333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
347, 66
               

               
Conread position:
               
251-557
               

               
Cow position:
               
chrX:34237919-34238220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 68
               

               
Conread position:
               
251-593
               

               
Cow position:
               
chrX:12640511-12640842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
251-668
               

               
Cow position:
               
chrX:33827898-33827491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 98
               

               
Conread position:
               
252-425
               

               
Cow position:
               
chrX:25360193-25360364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
112, 13
               

               
Conread position:
               
252-669
               

               
Cow position:
               
chrX:34253371-34253788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
344, 63
               

               
Conread position:
               
253-526
               

               
Cow position:
               
chrX:3596606-3596878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
253-588
               

               
Cow position:
               
chrX:19622456-19622775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
80, 59
               

               
Conread position:
               
253-669
               

               
Cow position:
               
chrX:5892371-5892787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
343, 62
               

               
Conread position:
               
254-665
               

               
Cow position:
               
chrX:32419327-32419718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
342, 63
               

               
Conread position:
               
255-669
               

               
Cow position:
               
chrX:24509012-24509426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
341, 59
               

               
Conread position:
               
259-668
               

               
Cow position:
               
chrX:25198595-25198997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
202, 66
               

               
Conread position:
               
262-669
               

               
Cow position:
               
chrX:160582-160987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 53
               

               
Conread position:
               
268-588
               

               
Cow position:
               
chrX:15306714-15306396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
186, 47
               

               
Conread position:
               
268-666
               

               
Cow position:
               
chrX:30144126-30143728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
328, 47
               

               
Conread position:
               
268-669
               

               
Cow position:
               
chrX:40788293-40788706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 20
               

               
Conread position:
               
270-525
               

               
Cow position:
               
chrX:40516671-40516914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
274-669
               

               
Cow position:
               
chrX:11083442-11083051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 45
               

               
Conread position:
               
274-669
               

               
Cow position:
               
chrX:34990227-34990619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 40
               

               
Conread position:
               
275-558
               

               
Cow position:
               
chrX:43789667-43789393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
14, 29
               

               
Conread position:
               
277-668
               

               
Cow position:
               
chrX:19556191-19556564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
245, 39
               

               
Conread position:
               
278-495
               

               
Cow position:
               
chrX:33965510-33965301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
127, 41
               

               
Conread position:
               
278-669
               

               
Cow position:
               
chrX:39387262-39386872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 36
               

               
Conread position:
               
282-669
               

               
Cow position:
               
chrX:40278988-40279361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
284-536
               

               
Cow position:
               
chrX:11613678-11613934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
105, 28
               

               
Conread position:
               
286-669
               

               
Cow position:
               
chrX:3952030-3952409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
219, 33
               

               
Conread position:
               
288-529
               

               
Cow position:
               
chrX:11509014-11509256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
152, 212
               

               
Conread position:
               
291-559
               

               
Cow position:
               
chrX:16517951-16517684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
291-566
               

               
Cow position:
               
chrX:19650320-19650057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
259, 28
               

               
Conread position:
               
291-669
               

               
Cow position:
               
chrX:21500810-21501177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 28
               

               
Conread position:
               
297-669
               

               
Cow position:
               
chrX:37781881-37781520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 27
               

               
Conread position:
               
297-669
               

               
Cow position:
               
chrX:40827552-40827186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 22
               

               
Conread position:
               
323-669
               

               
Cow position:
               
chrX:10931885-10932232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 0
               
Show alignments to all cow chromosomes.