Cow genome map
| Conread name: | Lym2-sn65_H12.f |
| Conread position: | 11-219 |
| Cow position: | chr11:28229059-28228848 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 14-219 |
| Cow position: | chr11:23880739-23880947 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 15-214 |
| Cow position: | chr11:7110398-7110195 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 19-168 |
| Cow position: | chr11:22935809-22935958 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 104, 33 |
| Conread position: | 19-187 |
| Cow position: | chr11:37358003-37358176 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 19-204 |
| Cow position: | chr11:81851994-81851811 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 30, 129 |
| Conread position: | 19-210 |
| Cow position: | chr11:38834720-38834526 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 29, 144 |
| Conread position: | 19-214 |
| Cow position: | chr11:4063154-4062960 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 32, 70 |
| Conread position: | 19-216 |
| Cow position: | chr11:9224834-9224631 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 25, 14 |
| Conread position: | 19-216 |
| Cow position: | chr11:42311726-42311526 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 32, 144 |
| Conread position: | 19-217 |
| Cow position: | chr11:12357700-12357498 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 19-218 |
| Cow position: | chr11:4026892-4026694 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 104, 26 |
| Conread position: | 19-218 |
| Cow position: | chr11:14728330-14728131 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 135, 143 |
| Conread position: | 19-218 |
| Cow position: | chr11:24394028-24394230 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 19-218 |
| Cow position: | chr11:29232299-29232100 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 31, 102 |
| Conread position: | 19-219 |
| Cow position: | chr11:1489431-1489236 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 25, 75 |
| Conread position: | 19-219 |
| Cow position: | chr11:4034634-4034428 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 19-219 |
| Cow position: | chr11:4269687-4269484 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 19-219 |
| Cow position: | chr11:10848166-10848368 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 19-219 |
| Cow position: | chr11:19101780-19101569 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 19-219 |
| Cow position: | chr11:26124211-26124012 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 104, 142 |
| Conread position: | 19-219 |
| Cow position: | chr11:28053899-28053697 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 29, 79 |
| Conread position: | 19-219 |
| Cow position: | chr11:28064810-28065010 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 72 |
| Conread position: | 19-219 |
| Cow position: | chr11:29667892-29667688 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 19-219 |
| Cow position: | chr11:30252947-30253150 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 27, 146 |
| Conread position: | 19-219 |
| Cow position: | chr11:31861613-31861819 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 161 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 19-219 |
| Cow position: | chr11:39804454-39804656 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 15, 54 |
| Conread position: | 19-219 |
| Cow position: | chr11:41169980-41169776 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 19-219 |
| Cow position: | chr11:43513917-43513713 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 19-219 |
| Cow position: | chr11:44582620-44582421 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 29, 175 |
| Conread position: | 19-219 |
| Cow position: | chr11:49558969-49558760 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 17, 196 |
| Conread position: | 19-219 |
| Cow position: | chr11:58135109-58135314 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 19-219 |
| Cow position: | chr11:71330306-71330513 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 19-219 |
| Cow position: | chr11:72310319-72310116 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 19-219 |
| Cow position: | chr11:85393099-85392908 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 24, 73 |
| Conread position: | 20-219 |
| Cow position: | chr11:37476263-37476064 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 98, 14 |
| Conread position: | 22-219 |
| Cow position: | chr11:44156529-44156332 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 26, 141 |
| Conread position: | 22-219 |
| Cow position: | chr11:44252514-44252715 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 23-218 |
| Cow position: | chr11:28108856-28109054 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 23-218 |
| Cow position: | chr11:29613274-29613077 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 23, 67 |
| Conread position: | 23-218 |
| Cow position: | chr11:32452546-32452744 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 23-218 |
| Cow position: | chr11:44518146-44517948 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 19, 51 |
| Conread position: | 23-219 |
| Cow position: | chr11:3493713-3493906 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 23, 101 |
| Conread position: | 23-219 |
| Cow position: | chr11:17106966-17106765 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 23-219 |
| Cow position: | chr11:17546883-17547080 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 23-219 |
| Cow position: | chr11:19063353-19063155 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 19, 135 |
| Conread position: | 23-219 |
| Cow position: | chr11:73134004-73134207 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 29-218 |
| Cow position: | chr11:3855945-3856136 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 18, 158 |
| Conread position: | 31-187 |
| Cow position: | chr11:76373259-76373103 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 128 |
| Conread position: | 31-216 |
| Cow position: | chr11:9733951-9733763 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 31-218 |
| Cow position: | chr11:47759552-47759361 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 92, 10 |
| Conread position: | 31-218 |
| Cow position: | chr11:57627326-57627136 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 31-219 |
| Cow position: | chr11:9156425-9156230 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 31-219 |
| Cow position: | chr11:9601585-9601399 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 97, 20 |
| Conread position: | 31-219 |
| Cow position: | chr11:11988862-11989050 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 17, 99 |
| Conread position: | 31-219 |
| Cow position: | chr11:20733509-20733321 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 18, 127 |
| Conread position: | 31-219 |
| Cow position: | chr11:26548246-26548443 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 57 |
| Conread position: | 31-219 |
| Cow position: | chr11:31873888-31873705 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 155, 25 |
| Conread position: | 31-219 |
| Cow position: | chr11:53431323-53431132 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 31-219 |
| Cow position: | chr11:74424323-74424513 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 20, 135 |
| Conread position: | 32-219 |
| Cow position: | chr11:87142316-87142497 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 83, 19 |
| Conread position: | 34-220 |
| Cow position: | chr11:49553432-49553253 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 111, 17 |
| Conread position: | 39-219 |
| Cow position: | chr11:20505964-20506146 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 12, 114 |
| Conread position: | 39-219 |
| Cow position: | chr11:20511340-20511522 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 12, 114 |
| Conread position: | 42-219 |
| Cow position: | chr11:40775257-40775082 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 80, 8 |
| Conread position: | 45-219 |
| Cow position: | chr11:30123096-30122925 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 79, 36 |
| Conread position: | 53-184 |
| Cow position: | chr11:10056097-10056230 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 54-219 |
| Cow position: | chr11:63654582-63654416 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 57 |
| Conread position: | 60-210 |
| Cow position: | chr11:27657061-27657213 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 67-219 |
| Cow position: | chr11:27669433-27669280 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 83, 96 |
| Conread position: | 68-219 |
| Cow position: | chr11:44490848-44490701 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 55, 7 |
| Conread position: | 100-219 |
| Cow position: | chr11:32983029-32982909 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 103-219 |
| Cow position: | chr11:21899043-21898924 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 20, 45 |
Show alignments to all cow chromosomes.