Cow genome map
| Conread name: | Lym2-sn65_H12.f |
| Conread position: | 6-219 |
| Cow position: | chr15:6079401-6079615 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 111, 135 |
| Conread position: | 11-215 |
| Cow position: | chr15:3889544-3889750 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 14-219 |
| Cow position: | chr15:38981380-38981586 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 19-173 |
| Cow position: | chr15:44070587-44070744 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 19-197 |
| Cow position: | chr15:13391405-13391225 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 79 |
| Conread position: | 19-207 |
| Cow position: | chr15:32694223-32694412 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 14, 138 |
| Conread position: | 19-208 |
| Cow position: | chr15:36668408-36668601 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 19-211 |
| Cow position: | chr15:1299901-1299704 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 66, 26 |
| Conread position: | 19-213 |
| Cow position: | chr15:19737389-19737201 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 19-216 |
| Cow position: | chr15:36392479-36392294 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 105, 31 |
| Conread position: | 19-217 |
| Cow position: | chr15:6485244-6485441 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 19-218 |
| Cow position: | chr15:6623872-6624069 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 28, 42 |
| Conread position: | 19-218 |
| Cow position: | chr15:8409536-8409735 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 104, 20 |
| Conread position: | 19-218 |
| Cow position: | chr15:16595490-16595691 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 19-218 |
| Cow position: | chr15:17148780-17148984 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 25, 84 |
| Conread position: | 19-218 |
| Cow position: | chr15:24717995-24718202 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 19-218 |
| Cow position: | chr15:51611012-51611207 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 104, 42 |
| Conread position: | 19-219 |
| Cow position: | chr15:2017225-2017424 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 13, 104 |
| Conread position: | 19-219 |
| Cow position: | chr15:3260658-3260459 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 19-219 |
| Cow position: | chr15:4386420-4386616 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 29, 96 |
| Conread position: | 19-219 |
| Cow position: | chr15:4672095-4672300 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 23, 142 |
| Conread position: | 19-219 |
| Cow position: | chr15:4915853-4916050 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 19-219 |
| Cow position: | chr15:4922809-4923007 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 36, 32 |
| Conread position: | 19-219 |
| Cow position: | chr15:4950724-4950929 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 19-219 |
| Cow position: | chr15:4962294-4962498 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 17, 114 |
| Conread position: | 19-219 |
| Cow position: | chr15:6155283-6155082 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 32, 87 |
| Conread position: | 19-219 |
| Cow position: | chr15:7261271-7261468 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 109, 34 |
| Conread position: | 19-219 |
| Cow position: | chr15:14581700-14581501 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 19-219 |
| Cow position: | chr15:15346454-15346250 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 16, 139 |
| Conread position: | 19-219 |
| Cow position: | chr15:17293722-17293910 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 19-219 |
| Cow position: | chr15:18332169-18331965 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 19-219 |
| Cow position: | chr15:21665086-21664880 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 23, 146 |
| Conread position: | 19-219 |
| Cow position: | chr15:24295758-24295948 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 29, 65 |
| Conread position: | 19-219 |
| Cow position: | chr15:31359537-31359734 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 141 |
| Conread position: | 19-219 |
| Cow position: | chr15:32711884-32712087 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 19-219 |
| Cow position: | chr15:35647012-35646816 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 25, 83 |
| Conread position: | 19-219 |
| Cow position: | chr15:51218264-51218461 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 109, 31 |
| Conread position: | 19-219 |
| Cow position: | chr15:51675378-51675579 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 104, 34 |
| Conread position: | 19-220 |
| Cow position: | chr15:12420767-12420562 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 16, 117 |
| Conread position: | 20-218 |
| Cow position: | chr15:2214234-2214034 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 26 |
| Conread position: | 20-219 |
| Cow position: | chr15:7837923-7838124 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 124 |
| Conread position: | 20-219 |
| Cow position: | chr15:32720084-32719881 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 20-219 |
| Cow position: | chr15:35736450-35736655 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 22-155 |
| Cow position: | chr15:7545528-7545662 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 22-219 |
| Cow position: | chr15:524196-524007 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 90 |
| Conread position: | 22-219 |
| Cow position: | chr15:8811362-8811161 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 22-219 |
| Cow position: | chr15:18577374-18577575 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 22-219 |
| Cow position: | chr15:35752655-35752456 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 26, 94 |
| Conread position: | 23-216 |
| Cow position: | chr15:2646991-2646795 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 23-218 |
| Cow position: | chr15:1042540-1042342 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 23-218 |
| Cow position: | chr15:3009180-3008981 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 13, 179 |
| Conread position: | 23-218 |
| Cow position: | chr15:4142154-4141956 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 23-218 |
| Cow position: | chr15:11597344-11597146 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 23-218 |
| Cow position: | chr15:20750054-20750253 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 23-218 |
| Cow position: | chr15:22378568-22378766 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 23-219 |
| Cow position: | chr15:1773162-1773361 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 23-219 |
| Cow position: | chr15:1782899-1783099 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 12, 74 |
| Conread position: | 23-219 |
| Cow position: | chr15:8100134-8100331 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 106, 40 |
| Conread position: | 24-219 |
| Cow position: | chr15:2925974-2926171 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 25-211 |
| Cow position: | chr15:445284-445469 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 103, 26 |
| Conread position: | 25-218 |
| Cow position: | chr15:4197128-4197324 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 29-216 |
| Cow position: | chr15:28986370-28986180 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 23, 37 |
| Conread position: | 29-219 |
| Cow position: | chr15:5981015-5981212 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 29-219 |
| Cow position: | chr15:8751080-8751266 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 163, 5 |
| Conread position: | 31-216 |
| Cow position: | chr15:41357842-41358030 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 31-219 |
| Cow position: | chr15:2588777-2588591 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 31-219 |
| Cow position: | chr15:21450351-21450543 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 16, 159 |
| Conread position: | 31-219 |
| Cow position: | chr15:50123259-50123071 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 92, 14 |
| Conread position: | 32-219 |
| Cow position: | chr15:4678934-4679121 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 91, 40 |
| Conread position: | 34-219 |
| Cow position: | chr15:6591938-6591754 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 16 |
| Conread position: | 35-218 |
| Cow position: | chr15:58332-58517 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 13, 6 |
| Conread position: | 35-219 |
| Cow position: | chr15:315156-314973 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 88, 126 |
| Conread position: | 35-219 |
| Cow position: | chr15:6368128-6367940 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 129, 16 |
| Conread position: | 40-219 |
| Cow position: | chr15:4813282-4813462 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 43-219 |
| Cow position: | chr15:4765871-4766046 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 7 |
| Conread position: | 43-219 |
| Cow position: | chr15:32493191-32493012 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 88, 7 |
| Conread position: | 45-218 |
| Cow position: | chr15:580128-580292 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 144, 37 |
| Conread position: | 45-219 |
| Cow position: | chr15:1764997-1765166 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 118, 71 |
| Conread position: | 45-219 |
| Cow position: | chr15:6383486-6383310 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 45-219 |
| Cow position: | chr15:6386654-6386481 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 71, 99 |
| Conread position: | 45-220 |
| Cow position: | chr15:9430626-9430801 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 74, 136 |
Show alignments to all cow chromosomes.