Cow genome map
| Conread name: | Lym2-sn65_H12.f |
| Conread position: | 6-203 |
| Cow position: | chr21:27566909-27567114 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 121, 9 |
| Conread position: | 7-236 |
| Cow position: | chr21:2673842-2673609 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 35, 8 |
| Conread position: | 11-218 |
| Cow position: | chr21:21915852-21916064 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 11, 93 |
| Conread position: | 19-211 |
| Cow position: | chr21:26849846-26849649 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 19-216 |
| Cow position: | chr21:45782657-45782857 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 19-218 |
| Cow position: | chr21:218204-218402 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 56 |
| Conread position: | 19-218 |
| Cow position: | chr21:5840088-5839887 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 19-218 |
| Cow position: | chr21:47646506-47646705 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 32, 144 |
| Conread position: | 19-218 |
| Cow position: | chr21:47942123-47942323 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 160 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 29, 104 |
| Conread position: | 19-219 |
| Cow position: | chr21:30253-30449 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 71 |
| Conread position: | 19-219 |
| Cow position: | chr21:147105-147303 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 16, 109 |
| Conread position: | 19-219 |
| Cow position: | chr21:2417387-2417591 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 14, 136 |
| Conread position: | 19-219 |
| Cow position: | chr21:2882562-2882361 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 27, 144 |
| Conread position: | 19-219 |
| Cow position: | chr21:3779943-3780147 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 19-219 |
| Cow position: | chr21:10851255-10851462 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 17, 188 |
| Conread position: | 19-219 |
| Cow position: | chr21:18817376-18817171 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 181 |
| Conread position: | 19-219 |
| Cow position: | chr21:26402312-26402111 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 19-219 |
| Cow position: | chr21:28256604-28256802 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 22, 41 |
| Conread position: | 19-219 |
| Cow position: | chr21:28736365-28736552 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 110, 20 |
| Conread position: | 19-219 |
| Cow position: | chr21:30598304-30598103 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 76 |
| Conread position: | 19-219 |
| Cow position: | chr21:33253356-33253559 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 19-219 |
| Cow position: | chr21:40270499-40270296 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 23, 185 |
| Conread position: | 20-219 |
| Cow position: | chr21:4588800-4588600 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 103, 22 |
| Conread position: | 21-218 |
| Cow position: | chr21:27284644-27284844 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 22-213 |
| Cow position: | chr21:30562662-30562849 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 26, 129 |
| Conread position: | 22-219 |
| Cow position: | chr21:1192936-1193132 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 23-218 |
| Cow position: | chr21:27036221-27036023 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 23-218 |
| Cow position: | chr21:34823034-34822836 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 23-218 |
| Cow position: | chr21:40683266-40683069 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 23-219 |
| Cow position: | chr21:39426239-39426438 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 19, 43 |
| Conread position: | 25-215 |
| Cow position: | chr21:2712132-2712309 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 164, 23 |
| Conread position: | 28-218 |
| Cow position: | chr21:1287017-1286830 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 161, 83 |
| Conread position: | 31-219 |
| Cow position: | chr21:2512034-2512224 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 59 |
| Conread position: | 31-219 |
| Cow position: | chr21:27069775-27069587 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 20, 132 |
| Conread position: | 31-219 |
| Cow position: | chr21:31515130-31514939 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 31-219 |
| Cow position: | chr21:35144945-35145136 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 34-219 |
| Cow position: | chr21:11506800-11506989 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 44-219 |
| Cow position: | chr21:28613550-28613725 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 15 |
| Conread position: | 45-219 |
| Cow position: | chr21:468058-468233 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 45-219 |
| Cow position: | chr21:26836100-26836274 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 80, 113 |
| Conread position: | 47-219 |
| Cow position: | chr21:4077988-4078153 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 116, 72 |
| Conread position: | 60-215 |
| Cow position: | chr21:5012487-5012333 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 18 |
| Conread position: | 83-219 |
| Cow position: | chr21:4185166-4185302 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 84-218 |
| Cow position: | chr21:21519839-21519976 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 103-219 |
| Cow position: | chr21:10567962-10568080 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
Show alignments to all cow chromosomes.