Cow genome map
| Conread name: | Lym2-sn65_H12.f |
| Conread position: | 4-219 |
| Cow position: | chr9:2498093-2497874 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 7-218 |
| Cow position: | chr9:22432167-22432377 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 35, 8 |
| Conread position: | 8-210 |
| Cow position: | chr9:5515309-5515515 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 9-217 |
| Cow position: | chr9:204559-204347 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 11-219 |
| Cow position: | chr9:130272-130059 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 13-218 |
| Cow position: | chr9:25187995-25188204 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 19-213 |
| Cow position: | chr9:29027308-29027112 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 19-216 |
| Cow position: | chr9:25633109-25632916 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 19-217 |
| Cow position: | chr9:4533391-4533597 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 19-218 |
| Cow position: | chr9:5141621-5141816 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 19-218 |
| Cow position: | chr9:30435475-30435675 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 19-218 |
| Cow position: | chr9:32969850-32970051 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 19-218 |
| Cow position: | chr9:35315974-35315776 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 169, 15 |
| Conread position: | 19-219 |
| Cow position: | chr9:3963226-3963025 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 83 |
| Conread position: | 19-219 |
| Cow position: | chr9:5004874-5005074 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 29, 112 |
| Conread position: | 19-219 |
| Cow position: | chr9:7061180-7060978 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 23, 145 |
| Conread position: | 19-219 |
| Cow position: | chr9:8165979-8165780 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 14, 139 |
| Conread position: | 19-219 |
| Cow position: | chr9:10322706-10322906 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 19-219 |
| Cow position: | chr9:10937496-10937700 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 19-219 |
| Cow position: | chr9:16176672-16176872 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 19-219 |
| Cow position: | chr9:17305074-17304872 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 29, 162 |
| Conread position: | 19-219 |
| Cow position: | chr9:19158640-19158434 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 19-219 |
| Cow position: | chr9:21410196-21410402 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 19-219 |
| Cow position: | chr9:22654475-22654681 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 19-219 |
| Cow position: | chr9:27035585-27035788 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 19-219 |
| Cow position: | chr9:28022707-28022911 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 19-219 |
| Cow position: | chr9:29627850-29627652 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 19-219 |
| Cow position: | chr9:30488496-30488699 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 19-219 |
| Cow position: | chr9:30673269-30673480 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 19-219 |
| Cow position: | chr9:37161910-37161707 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 19-219 |
| Cow position: | chr9:42310583-42310783 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 104, 20 |
| Conread position: | 19-219 |
| Cow position: | chr9:44819050-44819251 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 33, 167 |
| Conread position: | 19-219 |
| Cow position: | chr9:50698205-50698408 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 19-219 |
| Cow position: | chr9:59481894-59481691 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 19-219 |
| Cow position: | chr9:59537000-59537200 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 24, 144 |
| Conread position: | 19-219 |
| Cow position: | chr9:60277112-60276913 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 19-220 |
| Cow position: | chr9:1637568-1637760 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 71 |
| Conread position: | 19-222 |
| Cow position: | chr9:47003096-47003294 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 98 |
| Conread position: | 20-216 |
| Cow position: | chr9:4282876-4283069 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 103, 30 |
| Conread position: | 20-219 |
| Cow position: | chr9:2871233-2871428 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 20-219 |
| Cow position: | chr9:26083638-26083452 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 27, 56 |
| Conread position: | 22-217 |
| Cow position: | chr9:27783090-27783291 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 22-219 |
| Cow position: | chr9:1981180-1981379 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 26, 68 |
| Conread position: | 22-219 |
| Cow position: | chr9:1995486-1995285 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 22-219 |
| Cow position: | chr9:6250204-6250404 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 22-219 |
| Cow position: | chr9:31808482-31808682 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 23-207 |
| Cow position: | chr9:50791619-50791805 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 179 |
| Conread position: | 23-218 |
| Cow position: | chr9:30827643-30827841 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 23-218 |
| Cow position: | chr9:31065624-31065822 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 23-218 |
| Cow position: | chr9:51211587-51211785 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 23-219 |
| Cow position: | chr9:4942900-4942707 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 23-219 |
| Cow position: | chr9:28678877-28679077 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 23-219 |
| Cow position: | chr9:45874242-45874443 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 19, 180 |
| Conread position: | 24-219 |
| Cow position: | chr9:51181270-51181072 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 25-218 |
| Cow position: | chr9:28440717-28440913 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 26-219 |
| Cow position: | chr9:18508914-18508717 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 29-218 |
| Cow position: | chr9:5798885-5798693 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 31-219 |
| Cow position: | chr9:17063468-17063278 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 143 |
| Conread position: | 33-219 |
| Cow position: | chr9:3804471-3804656 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 131, 82 |
| Conread position: | 48-219 |
| Cow position: | chr9:7159015-7158842 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 53-219 |
| Cow position: | chr9:20939260-20939424 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 139, 21 |
| Conread position: | 54-218 |
| Cow position: | chr9:3167865-3168031 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 138 |
| Conread position: | 54-218 |
| Cow position: | chr9:46859524-46859358 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 65-219 |
| Cow position: | chr9:20308061-20307909 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 137 |
| Conread position: | 68-218 |
| Cow position: | chr9:18211173-18211329 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 68-219 |
| Cow position: | chr9:651075-650922 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 77, 51 |
| Conread position: | 83-219 |
| Cow position: | chr9:59447314-59447448 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 102, 121 |
Show alignments to all cow chromosomes.