Cow genome map

Conread name: Lym2-sn66_E02.f

Conread position: 111-381
Cow position: chr10:39040473-39040207 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 199
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 161, 28

Conread position: 111-398
Cow position: chr10:32701562-32701841 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 114-405
Cow position: chr10:1665698-1665409 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 201
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 111, 25

Conread position: 118-403
Cow position: chr10:38344517-38344236 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 11

Conread position: 119-354
Cow position: chr10:7274615-7274845 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 10, 0

Conread position: 119-381
Cow position: chr10:11684802-11684544 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 106, 10

Conread position: 119-405
Cow position: chr10:27664421-27664139 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 209
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 106, 10

Conread position: 120-334
Cow position: chr10:62408001-62407788 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 19, 0

Conread position: 120-366
Cow position: chr10:30684670-30684426 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 176
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 239, 19

Conread position: 120-379
Cow position: chr10:125235-125490 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 19, 0

Conread position: 120-379
Cow position: chr10:7281245-7280992 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 191
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 19, 0

Conread position: 120-381
Cow position: chr10:22102081-22102338 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-388
Cow position: chr10:21487764-21488025 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 200
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 94, 19

Conread position: 120-396
Cow position: chr10:29845805-29845533 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr10:1378349-1378623 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr10:8290821-8291101 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 19

Conread position: 120-398
Cow position: chr10:14335006-14334732 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr10:16926377-16926646 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 200
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr10:57989147-57988878 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 241, 19

Conread position: 120-403
Cow position: chr10:2120169-2119893 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 205
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 258, 19

Conread position: 121-345
Cow position: chr10:4190969-4190749 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 18, 0

Conread position: 121-345
Cow position: chr10:21731004-21730783 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 191, 18

Conread position: 121-371
Cow position: chr10:39815695-39815447 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 173
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 181, 18

Conread position: 121-379
Cow position: chr10:11699087-11699342 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 187
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 104, 18

Conread position: 121-398
Cow position: chr10:38537653-38537383 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 200
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 18, 0

Conread position: 121-399
Cow position: chr10:21399827-21399552 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 200
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 104, 18

Conread position: 121-399
Cow position: chr10:39779277-39779003 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 121-399
Cow position: chr10:41158285-41158567 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 104, 18

Conread position: 121-399
Cow position: chr10:44708772-44708494 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 194
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 251, 18

Conread position: 121-399
Cow position: chr10:57556496-57556221 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 195
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr10:279764-279483 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 200
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr10:14804678-14804969 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 207
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr10:19495436-19495154 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 278, 18

Conread position: 121-405
Cow position: chr10:19840524-19840807 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 278, 18

Conread position: 121-405
Cow position: chr10:21739906-21739624 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 197
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr10:28642377-28642659 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 197
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr10:34286101-34286383 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 202
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr10:39180633-39180922 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 208
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr10:41567943-41568224 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 197
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr10:47083925-47083643 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 93, 18

Conread position: 121-405
Cow position: chr10:47907774-47908058 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 207
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr10:55094110-55094392 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 199
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 104, 18

Conread position: 122-405
Cow position: chr10:41877761-41878045 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 103, 17

Conread position: 123-405
Cow position: chr10:38545067-38544796 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 15, 104

Conread position: 126-396
Cow position: chr10:29110293-29110031 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 104, 0

Conread position: 129-275
Cow position: chr10:33348198-33348344 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 55, 10

Conread position: 129-352
Cow position: chr10:29631919-29631696 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 119, 10

Conread position: 129-381
Cow position: chr10:38849155-38849402 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 173
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 54, 25

Conread position: 129-398
Cow position: chr10:3542211-3541952 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 186
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 112, 10

Conread position: 129-403
Cow position: chr10:186942-187216 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 191
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 63, 10

Conread position: 129-405
Cow position: chr10:40151394-40151118 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 10

Conread position: 129-405
Cow position: chr10:50135413-50135692 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 134, 10

Conread position: 130-396
Cow position: chr10:28982810-28982549 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 174
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 179, 15

Conread position: 130-405
Cow position: chr10:28929102-28928836 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 199
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 242, 11

Conread position: 132-377
Cow position: chr10:14862540-14862782 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 183
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 59, 16

Conread position: 134-394
Cow position: chr10:57501675-57501932 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 178
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 61, 81

Conread position: 140-332
Cow position: chr10:22303625-22303437 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 136
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 90, 0

Conread position: 141-381
Cow position: chr10:26597477-26597713 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 0

Conread position: 141-403
Cow position: chr10:19544515-19544257 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 178
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 144, 0

Conread position: 143-376
Cow position: chr10:42111290-42111518 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 164
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 203, 160

Conread position: 152-345
Cow position: chr10:20290964-20290773 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 73, 66

Conread position: 157-405
Cow position: chr10:8326440-8326197 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 30, 58

Conread position: 166-396
Cow position: chr10:20370191-20369963 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 18, 165

Conread position: 171-403
Cow position: chr10:19512486-19512713 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 172
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 226, 36

Conread position: 180-398
Cow position: chr10:17433247-17433468 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 131, 198

Conread position: 187-403
Cow position: chr10:42752039-42752253 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 204, 143

Conread position: 193-400
Cow position: chr10:21480851-21481053 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 113, 48

Conread position: 203-381
Cow position: chr10:39439290-39439452 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 234-399
Cow position: chr10:28256460-28256299 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 278-398
Cow position: chr10:6246-6363 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 49, 0

Show alignments to all cow chromosomes.