Cow genome map

Conread name: Lym2-sn66_E02.f

Conread position: 109-332
Cow position: chr11:51279945-51279727 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 116, 38

Conread position: 114-405
Cow position: chr11:44518392-44518101 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 203
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 188, 25

Conread position: 118-381
Cow position: chr11:53431578-53431320 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 119-398
Cow position: chr11:38834956-38834681 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 119-399
Cow position: chr11:52419872-52420156 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 194
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 106, 10

Conread position: 120-353
Cow position: chr11:23877776-23878005 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 173
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 19, 0

Conread position: 120-377
Cow position: chr11:53286684-53286431 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 174
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 116, 19

Conread position: 120-381
Cow position: chr11:11988592-11988864 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 201
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 152, 19

Conread position: 120-381
Cow position: chr11:26547991-26548249 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr11:12357936-12357661 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 19

Conread position: 120-398
Cow position: chr11:19102015-19101741 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr11:29668128-29667852 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 0

Conread position: 120-398
Cow position: chr11:41170215-41169940 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr11:43514152-43513878 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 120-398
Cow position: chr11:44156767-44156493 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr11:58134874-58135150 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 19

Conread position: 120-398
Cow position: chr11:71330073-71330349 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 19

Conread position: 120-403
Cow position: chr11:10847931-10848211 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-403
Cow position: chr11:26124446-26124166 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 121-332
Cow position: chr11:28229274-28229065 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 104, 18

Conread position: 121-369
Cow position: chr11:36743698-36743451 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 104, 18

Conread position: 121-378
Cow position: chr11:63654855-63654602 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 178
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 18, 0

Conread position: 121-381
Cow position: chr11:37476519-37476263 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 183
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 104, 18

Conread position: 121-381
Cow position: chr11:57627577-57627320 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 18, 0

Conread position: 121-381
Cow position: chr11:73477790-73478047 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 188
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 104, 18

Conread position: 121-398
Cow position: chr11:28054128-28053860 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 18, 0

Conread position: 121-399
Cow position: chr11:3493476-3493749 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 104, 18

Conread position: 121-399
Cow position: chr11:9734191-9733923 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 197
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 181, 18

Conread position: 121-400
Cow position: chr11:54484930-54484656 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 8

Conread position: 121-405
Cow position: chr11:5342440-5342156 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 200
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr11:15984107-15984398 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 207
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 181, 18

Conread position: 121-405
Cow position: chr11:17107204-17106920 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 204
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 114, 18

Conread position: 121-405
Cow position: chr11:19063591-19063309 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 18

Conread position: 121-405
Cow position: chr11:20733760-20733473 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr11:28108618-28108900 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr11:32452307-32452590 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 200
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr11:33194077-33193795 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 202
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr11:61400578-61400303 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr11:64081601-64081319 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 202
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr11:67450976-67451258 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 199
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 251, 18

Conread position: 121-405
Cow position: chr11:67846087-67845803 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 199
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 188, 18

Conread position: 122-334
Cow position: chr11:52657590-52657385 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 151, 17

Conread position: 122-396
Cow position: chr11:9601850-9601580 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 189
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 17, 0

Conread position: 122-398
Cow position: chr11:4269920-4269648 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 122-398
Cow position: chr11:44252280-44252551 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 203
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 16, 86

Conread position: 122-398
Cow position: chr11:85393325-85393060 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 203
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 17, 0

Conread position: 123-267
Cow position: chr11:42432619-42432761 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 6, 0

Conread position: 123-370
Cow position: chr11:20510877-20511122 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 15, 91

Conread position: 123-379
Cow position: chr11:77254244-77253994 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 177
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 83, 22

Conread position: 123-396
Cow position: chr11:27669851-27669585 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 189
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 15, 138

Conread position: 123-400
Cow position: chr11:23127412-23127141 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 190
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 39, 16

Conread position: 123-403
Cow position: chr11:4063378-4063109 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 204
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 15, 42

Conread position: 123-405
Cow position: chr11:9156674-9156388 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 16

Conread position: 125-331
Cow position: chr11:82123670-82123468 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 62, 14

Conread position: 127-398
Cow position: chr11:44582848-44582581 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 12

Conread position: 129-273
Cow position: chr11:39803694-39803836 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 102, 10

Conread position: 129-294
Cow position: chr11:76373728-76373566 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 129-301
Cow position: chr11:4027071-4026900 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 85, 10

Conread position: 129-368
Cow position: chr11:31874289-31874062 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 129-381
Cow position: chr11:3855723-3855972 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 180
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 117, 10

Conread position: 129-390
Cow position: chr11:30123357-30123098 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 189
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 71, 10

Conread position: 129-390
Cow position: chr11:31926661-31926915 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 188
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 10, 0

Conread position: 129-398
Cow position: chr11:9216588-9216328 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 188
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 162, 10

Conread position: 129-398
Cow position: chr11:47759794-47759527 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 10

Conread position: 129-399
Cow position: chr11:29232520-29232259 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 129-399
Cow position: chr11:31861393-31861656 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 200
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 253, 10

Conread position: 129-400
Cow position: chr11:50027382-50027123 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 190
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 10, 0

Conread position: 129-405
Cow position: chr11:1495599-1495324 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 10

Conread position: 133-403
Cow position: chr11:21902602-21902336 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 193
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 123, 0

Conread position: 134-381
Cow position: chr11:26070565-26070330 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 184
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 138, 167

Conread position: 134-398
Cow position: chr11:71982034-71981761 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 202
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 200, 171

Conread position: 134-406
Cow position: chr11:1489648-1489378 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 199
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 247, 23

Conread position: 139-345
Cow position: chr11:30252696-30252901 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 157, 192

Conread position: 139-405
Cow position: chr11:17546663-17546926 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 190
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 86, 10

Conread position: 141-279
Cow position: chr11:46246061-46245921 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 141-363
Cow position: chr11:10091179-10091399 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 0

Conread position: 141-398
Cow position: chr11:12094068-12094320 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 0

Conread position: 141-403
Cow position: chr11:24393816-24394074 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 191

Conread position: 150-405
Cow position: chr11:4056968-4056715 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 181

Conread position: 151-405
Cow position: chr11:4034837-4034583 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 191
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 232, 43

Conread position: 153-346
Cow position: chr11:28391154-28391346 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 134
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 178, 172

Conread position: 154-405
Cow position: chr11:7110591-7110345 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 176
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 27, 23

Conread position: 163-396
Cow position: chr11:38219813-38219577 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 173, 0

Conread position: 170-396
Cow position: chr11:18887386-18887610 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 152
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 143, 0

Conread position: 190-403
Cow position: chr11:84390095-84390305 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 201, 9

Conread position: 191-391
Cow position: chr11:40775461-40775261 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 181, 138

Conread position: 214-405
Cow position: chr11:22935667-22935855 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 116, 0

Conread position: 227-403
Cow position: chr11:72310448-72310273 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 150, 103

Show alignments to all cow chromosomes.