Cow genome map
| Conread name: | Lym2-sn66_E02.f |
| Conread position: | 114-377 |
| Cow position: | chr14:44552303-44552556 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 114-405 |
| Cow position: | chr14:45028587-45028285 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 24, 178 |
| Conread position: | 115-400 |
| Cow position: | chr14:23257771-23258056 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 25 |
| Conread position: | 118-398 |
| Cow position: | chr14:5512247-5512521 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 119-263 |
| Cow position: | chr14:13303444-13303586 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 119-399 |
| Cow position: | chr14:27977783-27978058 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 106, 10 |
| Conread position: | 120-381 |
| Cow position: | chr14:7472785-7473038 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-381 |
| Cow position: | chr14:20782885-20783139 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-382 |
| Cow position: | chr14:19327845-19327585 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 114, 18 |
| Conread position: | 120-394 |
| Cow position: | chr14:50111215-50111486 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 255, 19 |
| Conread position: | 120-398 |
| Cow position: | chr14:5529491-5529770 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 19 |
| Conread position: | 120-398 |
| Cow position: | chr14:13274026-13274297 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-398 |
| Cow position: | chr14:15275805-15275536 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-398 |
| Cow position: | chr14:16272873-16272595 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 19 |
| Conread position: | 120-398 |
| Cow position: | chr14:17000636-17000362 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-399 |
| Cow position: | chr14:48253888-48253614 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-399 |
| Cow position: | chr14:48825706-48825985 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 19 |
| Conread position: | 120-402 |
| Cow position: | chr14:11153739-11153455 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 37, 19 |
| Conread position: | 120-403 |
| Cow position: | chr14:12742644-12742364 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-403 |
| Cow position: | chr14:16919291-16919014 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 19 |
| Conread position: | 120-403 |
| Cow position: | chr14:17685822-17686103 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 19 |
| Conread position: | 120-403 |
| Cow position: | chr14:32447219-32447496 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-403 |
| Cow position: | chr14:37224614-37224895 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 19 |
| Conread position: | 120-403 |
| Cow position: | chr14:44286828-44286549 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 279, 19 |
| Conread position: | 120-403 |
| Cow position: | chr14:44288732-44288453 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 279, 19 |
| Conread position: | 121-359 |
| Cow position: | chr14:17491035-17490800 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 121-392 |
| Cow position: | chr14:44689479-44689748 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 18 |
| Conread position: | 121-398 |
| Cow position: | chr14:44378226-44378494 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 121-398 |
| Cow position: | chr14:45081473-45081751 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 250, 209 |
| Conread position: | 121-399 |
| Cow position: | chr14:2284762-2285038 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 18 |
| Conread position: | 121-399 |
| Cow position: | chr14:29047261-29046987 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 121-399 |
| Cow position: | chr14:30584532-30584254 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 114, 18 |
| Conread position: | 121-403 |
| Cow position: | chr14:9100293-9100018 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 150, 8 |
| Conread position: | 121-403 |
| Cow position: | chr14:22031016-22030741 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 277, 18 |
| Conread position: | 121-405 |
| Cow position: | chr14:33393363-33393081 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 114, 18 |
| Conread position: | 121-405 |
| Cow position: | chr14:35917179-35916886 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 121-405 |
| Cow position: | chr14:45671623-45671341 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 123-398 |
| Cow position: | chr14:12610879-12611147 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 123-398 |
| Cow position: | chr14:37455635-37455367 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 124-404 |
| Cow position: | chr14:29775789-29775509 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 14 |
| Conread position: | 124-404 |
| Cow position: | chr14:30735405-30735679 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 7, 111 |
| Conread position: | 126-400 |
| Cow position: | chr14:29580606-29580865 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 128, 15 |
| Conread position: | 127-391 |
| Cow position: | chr14:13620723-13620462 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 129-301 |
| Cow position: | chr14:45161527-45161694 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 129-371 |
| Cow position: | chr14:45206755-45206982 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 126, 10 |
| Conread position: | 129-378 |
| Cow position: | chr14:45189346-45189100 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 215, 12 |
| Conread position: | 129-396 |
| Cow position: | chr14:12899527-12899792 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 251, 80 |
| Conread position: | 129-396 |
| Cow position: | chr14:34776654-34776913 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 98, 10 |
| Conread position: | 129-396 |
| Cow position: | chr14:35385638-35385377 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 257, 10 |
| Conread position: | 129-398 |
| Cow position: | chr14:2294706-2294973 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 241, 10 |
| Conread position: | 129-399 |
| Cow position: | chr14:48601895-48601642 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 129-400 |
| Cow position: | chr14:11561600-11561330 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 123, 208 |
| Conread position: | 129-404 |
| Cow position: | chr14:17760446-17760175 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 10 |
| Conread position: | 129-405 |
| Cow position: | chr14:44676551-44676825 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 78, 10 |
| Conread position: | 129-405 |
| Cow position: | chr14:50138996-50139267 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 106, 10 |
| Conread position: | 134-400 |
| Cow position: | chr14:48404529-48404271 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 138, 75 |
| Conread position: | 134-405 |
| Cow position: | chr14:46392095-46391825 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 237, 16 |
| Conread position: | 139-379 |
| Cow position: | chr14:35365817-35365579 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 182, 196 |
| Conread position: | 139-398 |
| Cow position: | chr14:44131337-44131582 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 139-399 |
| Cow position: | chr14:9046016-9046274 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 86, 77 |
| Conread position: | 139-400 |
| Cow position: | chr14:33237468-33237723 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 87, 101 |
| Conread position: | 139-405 |
| Cow position: | chr14:751007-751272 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 86, 77 |
| Conread position: | 139-405 |
| Cow position: | chr14:13863649-13863384 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 233, 56 |
| Conread position: | 139-405 |
| Cow position: | chr14:38531017-38530753 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 93 |
| Conread position: | 140-332 |
| Cow position: | chr14:16343707-16343514 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 141-392 |
| Cow position: | chr14:44226842-44227090 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 185, 0 |
| Conread position: | 141-396 |
| Cow position: | chr14:44581798-44582049 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 141-398 |
| Cow position: | chr14:40341494-40341750 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 189 |
| Conread position: | 141-405 |
| Cow position: | chr14:33402131-33402394 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 240, 68 |
| Conread position: | 142-398 |
| Cow position: | chr14:44775593-44775340 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 44, 105 |
| Conread position: | 149-396 |
| Cow position: | chr14:13462039-13462274 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 122, 60 |
| Conread position: | 152-400 |
| Cow position: | chr14:40169259-40169017 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 221, 74 |
| Conread position: | 163-351 |
| Cow position: | chr14:50393589-50393405 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 183-405 |
| Cow position: | chr14:37413259-37413039 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 189, 115 |
| Conread position: | 194-405 |
| Cow position: | chr14:43558734-43558942 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 203, 34 |
| Conread position: | 199-398 |
| Cow position: | chr14:13779440-13779635 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 216-400 |
| Cow position: | chr14:38229091-38228916 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
Show alignments to all cow chromosomes.