Cow genome map

Conread name: Lym2-sn66_E02.f

Conread position: 114-403
Cow position: chr15:2016986-2017273 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 204
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 24, 209

Conread position: 118-405
Cow position: chr15:32204042-32204315 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 256, 31

Conread position: 119-405
Cow position: chr15:4196888-4197170 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 106, 10

Conread position: 120-381
Cow position: chr15:6553396-6553151 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 187
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 19, 0

Conread position: 120-381
Cow position: chr15:10889042-10889296 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 191
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 19, 0

Conread position: 120-390
Cow position: chr15:7837674-7837942 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 0

Conread position: 120-392
Cow position: chr15:44829226-44829492 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 19, 0

Conread position: 120-393
Cow position: chr15:32493959-32493692 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-396
Cow position: chr15:315430-315162 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 194
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr15:524432-524160 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 204
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 121, 19

Conread position: 120-398
Cow position: chr15:4386185-4386459 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr15:6155518-6155244 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 19

Conread position: 120-398
Cow position: chr15:8811599-8811326 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr15:18332401-18332130 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 200
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 19, 0

Conread position: 120-399
Cow position: chr15:24295523-24295798 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-402
Cow position: chr15:3260893-3260614 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 200
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 19, 0

Conread position: 120-403
Cow position: chr15:19737624-19737344 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-403
Cow position: chr15:31359308-31359586 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 263, 19

Conread position: 120-403
Cow position: chr15:35752893-35752612 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 205
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 59, 19

Conread position: 120-403
Cow position: chr15:51218029-51218305 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 199
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 19, 0

Conread position: 120-403
Cow position: chr15:53136795-53136514 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 19

Conread position: 120-405
Cow position: chr15:3009428-3009135 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 200
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 105, 19

Conread position: 120-405
Cow position: chr15:20749816-20750098 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 203
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 105, 9

Conread position: 121-308
Cow position: chr15:2589063-2588876 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 82, 18

Conread position: 121-370
Cow position: chr15:4765602-4765849 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 7, 19

Conread position: 121-379
Cow position: chr15:445031-445288 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 181
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 104, 18

Conread position: 121-381
Cow position: chr15:2902046-2901793 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 192
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 18, 0

Conread position: 121-399
Cow position: chr15:17079779-17079500 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 197
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 181, 18

Conread position: 121-399
Cow position: chr15:21665320-21665043 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 19

Conread position: 121-399
Cow position: chr15:50123516-50123234 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 197
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 104, 18

Conread position: 121-404
Cow position: chr15:4142392-4142111 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 196
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 104, 18

Conread position: 121-404
Cow position: chr15:6471494-6471222 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 195
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 150, 18

Conread position: 121-404
Cow position: chr15:18267561-18267272 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 195
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr15:2647229-2646947 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 203
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 104, 20

Conread position: 121-405
Cow position: chr15:11597581-11597300 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr15:28489722-28489436 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 104, 18

Conread position: 122-397
Cow position: chr15:14581933-14581662 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 199
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 17, 0

Conread position: 122-403
Cow position: chr15:15346687-15346406 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 17

Conread position: 122-403
Cow position: chr15:44070355-44070634 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 276, 17

Conread position: 123-405
Cow position: chr15:4813030-4813308 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 198
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 274, 6

Conread position: 123-405
Cow position: chr15:6485018-6485291 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 193
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 277, 6

Conread position: 123-405
Cow position: chr15:6592191-6591907 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 53

Conread position: 125-398
Cow position: chr15:4651787-4652054 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 190
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 250, 69

Conread position: 125-398
Cow position: chr15:18577140-18577411 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 0

Conread position: 125-402
Cow position: chr15:8750831-8751112 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 248, 205

Conread position: 127-381
Cow position: chr15:21450095-21450352 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 188
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 175, 12

Conread position: 127-390
Cow position: chr15:20356484-20356230 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 171
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 129-332
Cow position: chr15:4686032-4686233 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 10, 0

Conread position: 129-332
Cow position: chr15:7965513-7965311 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 141
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 129-369
Cow position: chr15:1518720-1518483 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 176
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 96, 10

Conread position: 129-377
Cow position: chr15:17293512-17293741 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 129-390
Cow position: chr15:579875-580128 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 180
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 154, 10

Conread position: 129-390
Cow position: chr15:1238114-1238373 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 242, 10

Conread position: 129-396
Cow position: chr15:32694001-32694260 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 187
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 28, 0

Conread position: 129-398
Cow position: chr15:4671868-4672138 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 12

Conread position: 129-398
Cow position: chr15:5980782-5981045 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 10

Conread position: 129-399
Cow position: chr15:17217825-17217559 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 186
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 214, 10

Conread position: 129-400
Cow position: chr15:28986598-28986339 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 184
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 85, 12

Conread position: 129-403
Cow position: chr15:4922582-4922854 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 10

Conread position: 129-405
Cow position: chr15:1772931-1773206 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 195
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 98, 10

Conread position: 130-399
Cow position: chr15:2214459-2214196 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 184
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 101, 11

Conread position: 132-399
Cow position: chr15:6368522-6368250 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 194
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 196, 0

Conread position: 133-330
Cow position: chr15:51715365-51715563 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 108, 0

Conread position: 133-376
Cow position: chr15:5952873-5952635 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 170
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 10, 51

Conread position: 133-392
Cow position: chr15:51675154-51675415 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 191
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 108, 198

Conread position: 133-405
Cow position: chr15:32720304-32720036 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 200
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 259, 73

Conread position: 134-326
Cow position: chr15:1300367-1300177 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 99, 0

Conread position: 134-397
Cow position: chr15:2763101-2763359 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 58, 96

Conread position: 134-399
Cow position: chr15:4962076-4962337 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 24

Conread position: 134-399
Cow position: chr15:7234702-7234961 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 189
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 249, 66

Conread position: 134-402
Cow position: chr15:6623656-6623915 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 96, 0

Conread position: 134-404
Cow position: chr15:8099909-8100175 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 41

Conread position: 134-405
Cow position: chr15:9913127-9913405 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 31, 206

Conread position: 139-309
Cow position: chr15:7934773-7934942 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 130, 0

Conread position: 139-381
Cow position: chr15:3889322-3889561 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 173
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 74, 0

Conread position: 139-398
Cow position: chr15:9003677-9003424 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 131, 39

Conread position: 139-399
Cow position: chr15:1782666-1782937 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 189
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 96, 79

Conread position: 139-400
Cow position: chr15:6079193-6079454 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 191
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 19, 101

Conread position: 139-400
Cow position: chr15:36625827-36625567 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 66

Conread position: 140-382
Cow position: chr15:8057741-8057971 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 93, 0

Conread position: 141-323
Cow position: chr15:17148573-17148755 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 126
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 141-404
Cow position: chr15:35647222-35646962 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 78

Conread position: 142-396
Cow position: chr15:14636009-14636269 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 172
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 67, 149

Conread position: 151-403
Cow position: chr15:2077113-2077364 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 185
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 245, 179

Conread position: 152-390
Cow position: chr15:43757035-43757270 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 73, 64

Conread position: 152-405
Cow position: chr15:22378360-22378612 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 73, 64

Conread position: 154-398
Cow position: chr15:13391610-13391366 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 119, 125

Conread position: 159-390
Cow position: chr15:4822942-4823171 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 154
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 213, 139

Conread position: 163-363
Cow position: chr15:21948780-21948582 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 108, 116

Conread position: 173-396
Cow position: chr15:2012816-2013035 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 148
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 174-405
Cow position: chr15:7545342-7545573 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 51, 47

Conread position: 179-405
Cow position: chr15:36668229-36668456 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 15, 158

Conread position: 181-399
Cow position: chr15:2925797-2926008 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 149, 0

Conread position: 184-398
Cow position: chr15:35736277-35736487 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 146, 0

Conread position: 192-381
Cow position: chr15:1764823-1765001 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 211-400
Cow position: chr15:16595345-16595531 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 119, 0

Conread position: 217-404
Cow position: chr15:53409437-53409624 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 9, 114

Conread position: 226-405
Cow position: chr15:32711756-32711932 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 155, 6

Conread position: 234-398
Cow position: chr15:6386804-6386642 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 138, 32

Conread position: 266-396
Cow position: chr15:12420857-12420729 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 289-406
Cow position: chr15:4950658-4950774 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 102
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 108, 7

Show alignments to all cow chromosomes.