Cow genome map

Conread name: Lym2-sn66_E02.f

Conread position: 112-405
Cow position: chr17:20081222-20080937 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 108

Conread position: 114-395
Cow position: chr17:5227267-5227548 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 210
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 100, 25

Conread position: 114-405
Cow position: chr17:11783491-11783776 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 111, 25

Conread position: 116-405
Cow position: chr17:43989147-43989436 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 201
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 76, 23

Conread position: 118-398
Cow position: chr17:40805463-40805737 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 202
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 11, 0

Conread position: 118-403
Cow position: chr17:15324483-15324764 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 262, 11

Conread position: 119-398
Cow position: chr17:6260510-6260787 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 20

Conread position: 119-406
Cow position: chr17:34156773-34157056 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 10

Conread position: 120-380
Cow position: chr17:14894815-14895067 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr17:2580276-2580549 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 206
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 263, 19

Conread position: 120-398
Cow position: chr17:16856864-16856592 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 201
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr17:19268175-19267901 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr17:24029350-24029076 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-404
Cow position: chr17:11087068-11086785 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 19

Conread position: 121-356
Cow position: chr17:20722274-20722505 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 104, 18

Conread position: 121-368
Cow position: chr17:2247414-2247171 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 173
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 18, 0

Conread position: 121-381
Cow position: chr17:15142703-15142445 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 182
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 181, 98

Conread position: 121-398
Cow position: chr17:3642178-3641906 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 19

Conread position: 121-398
Cow position: chr17:15156314-15156044 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 188
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 18, 0

Conread position: 121-399
Cow position: chr17:8209763-8210041 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 199
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 104, 18

Conread position: 121-399
Cow position: chr17:23323798-23323519 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 194
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 114, 18

Conread position: 121-399
Cow position: chr17:24782813-24783088 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 191
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 185, 18

Conread position: 121-399
Cow position: chr17:31767386-31767112 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 197
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr17:2262759-2263046 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 211
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 89, 18

Conread position: 121-405
Cow position: chr17:3655639-3655358 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr17:6120367-6120651 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 201
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 251, 20

Conread position: 121-405
Cow position: chr17:14216378-14216092 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr17:15436447-15436729 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 203
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 104, 18

Conread position: 122-398
Cow position: chr17:6069210-6069483 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 17

Conread position: 123-323
Cow position: chr17:14307195-14306998 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 138
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 15, 62

Conread position: 123-376
Cow position: chr17:1787284-1787030 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 209

Conread position: 123-396
Cow position: chr17:38874284-38874557 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 186
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 124, 118

Conread position: 123-399
Cow position: chr17:18194467-18194738 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 190
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 15, 62

Conread position: 123-400
Cow position: chr17:20488596-20488871 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 200
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 22, 62

Conread position: 129-379
Cow position: chr17:227649-227403 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 171
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 10, 0

Conread position: 129-396
Cow position: chr17:20403087-20403345 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 190
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 144, 10

Conread position: 129-398
Cow position: chr17:250826-251088 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 196
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 18, 0

Conread position: 129-399
Cow position: chr17:4060762-4061025 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 129-403
Cow position: chr17:20087087-20086821 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 244, 10

Conread position: 134-378
Cow position: chr17:11025847-11025607 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 83, 0

Conread position: 139-396
Cow position: chr17:54782-54532 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 176, 0

Conread position: 139-396
Cow position: chr17:4942057-4941805 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 182
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 19, 0

Conread position: 139-399
Cow position: chr17:1657176-1656921 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 185
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 158, 22

Conread position: 139-403
Cow position: chr17:15851364-15851622 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 192
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 258, 93

Conread position: 139-405
Cow position: chr17:20099805-20099535 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 191

Conread position: 140-403
Cow position: chr17:1880771-1881034 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 193
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 232, 137

Conread position: 141-398
Cow position: chr17:151224-150968 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 137

Conread position: 141-398
Cow position: chr17:1704018-1703765 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 187
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 99, 89

Conread position: 141-405
Cow position: chr17:14040363-14040107 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 187
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 102, 0

Conread position: 152-400
Cow position: chr17:3708104-3707847 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 173
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 45, 143

Conread position: 157-398
Cow position: chr17:16121830-16121614 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 178
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 216, 29

Conread position: 167-404
Cow position: chr17:8202671-8202900 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 169
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 22, 62

Conread position: 176-405
Cow position: chr17:13705252-13705481 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 134, 156

Conread position: 188-400
Cow position: chr17:239064-239279 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 84, 90

Conread position: 192-399
Cow position: chr17:6611764-6611560 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 138, 0

Conread position: 204-405
Cow position: chr17:15371962-15372164 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 169, 126

Show alignments to all cow chromosomes.