Cow genome map

Conread name: Lym2-sn66_E02.f

Conread position: 111-381
Cow position: chr2:12479771-12479508 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 190
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 28, 0

Conread position: 113-405
Cow position: chr2:5484689-5484408 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 26

Conread position: 116-398
Cow position: chr2:47602963-47602682 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 9

Conread position: 118-396
Cow position: chr2:6961825-6962099 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 207
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 131, 13

Conread position: 118-398
Cow position: chr2:10185916-10185643 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 118-398
Cow position: chr2:24924871-24925147 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 13

Conread position: 118-398
Cow position: chr2:28649289-28649016 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 118-403
Cow position: chr2:8118850-8119131 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 11

Conread position: 119-398
Cow position: chr2:52062853-52063129 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 10

Conread position: 119-403
Cow position: chr2:10268350-10268071 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 20

Conread position: 119-405
Cow position: chr2:59413375-59413090 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 197
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 264, 10

Conread position: 120-372
Cow position: chr2:65938142-65937895 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 19, 0

Conread position: 120-381
Cow position: chr2:12224003-12223746 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 190
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr2:282381-282107 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr2:11158810-11158540 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr2:22078092-22078371 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 208
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 59, 19

Conread position: 120-398
Cow position: chr2:28793556-28793833 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 19

Conread position: 120-398
Cow position: chr2:42670397-42670122 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr2:50077909-50078182 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 19

Conread position: 120-398
Cow position: chr2:53330066-53330344 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 205
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 37, 19

Conread position: 120-398
Cow position: chr2:80292643-80292378 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr2:81257482-81257754 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 19

Conread position: 120-399
Cow position: chr2:5904010-5903735 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-399
Cow position: chr2:16900561-16900842 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 19

Conread position: 120-402
Cow position: chr2:32065772-32065489 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 253, 19

Conread position: 120-403
Cow position: chr2:36980689-36980969 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 19

Conread position: 120-405
Cow position: chr2:49605250-49605534 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 19

Conread position: 121-376
Cow position: chr2:57335506-57335758 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 18, 0

Conread position: 121-380
Cow position: chr2:25028973-25028718 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 183
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 104, 18

Conread position: 121-398
Cow position: chr2:19011654-19011935 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 19

Conread position: 121-398
Cow position: chr2:51617558-51617832 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 18

Conread position: 121-398
Cow position: chr2:78762960-78763242 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 18

Conread position: 121-399
Cow position: chr2:364749-364473 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 196
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 104, 17

Conread position: 121-399
Cow position: chr2:49472557-49472833 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 199
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 89, 18

Conread position: 121-399
Cow position: chr2:52616781-52617058 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 203
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 104, 18

Conread position: 121-403
Cow position: chr2:13045395-13045124 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 276, 18

Conread position: 121-405
Cow position: chr2:2356131-2355849 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr2:4402848-4402562 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 120, 18

Conread position: 121-405
Cow position: chr2:39421932-39422213 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 202
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr2:41657485-41657767 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr2:67420640-67420357 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 200
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 104, 18

Conread position: 122-301
Cow position: chr2:50982988-50982810 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 122-404
Cow position: chr2:9958761-9958477 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 180, 17

Conread position: 123-331
Cow position: chr2:14777530-14777332 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 148
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 123-381
Cow position: chr2:28640541-28640288 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 188
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 15, 108

Conread position: 123-398
Cow position: chr2:1691290-1691559 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 6

Conread position: 123-398
Cow position: chr2:38373695-38373964 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 188
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 175, 0

Conread position: 123-404
Cow position: chr2:44990986-44990709 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 259, 87

Conread position: 123-405
Cow position: chr2:7903350-7903626 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 91

Conread position: 124-381
Cow position: chr2:20902031-20901781 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 149, 106

Conread position: 127-403
Cow position: chr2:49627925-49628195 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 183
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 139, 18

Conread position: 129-362
Cow position: chr2:34051485-34051714 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 10, 0

Conread position: 129-380
Cow position: chr2:41150936-41151168 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 144, 10

Conread position: 129-381
Cow position: chr2:54737799-54738048 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 96, 10

Conread position: 129-392
Cow position: chr2:1113560-1113816 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 179
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 10, 0

Conread position: 129-398
Cow position: chr2:10732454-10732183 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 10

Conread position: 129-398
Cow position: chr2:24147183-24147445 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 129-398
Cow position: chr2:36030048-36029788 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 197
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 10, 0

Conread position: 129-400
Cow position: chr2:45964799-45964532 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 129-404
Cow position: chr2:27317633-27317895 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 193
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 102, 10

Conread position: 129-405
Cow position: chr2:10611325-10611043 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 201
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 16, 91

Conread position: 130-398
Cow position: chr2:31298105-31298373 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 199
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 67

Conread position: 133-395
Cow position: chr2:781121-780866 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 185
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 56, 43

Conread position: 134-381
Cow position: chr2:32655991-32656223 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 191
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 104, 0

Conread position: 134-398
Cow position: chr2:47811167-47811430 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 195
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 239, 122

Conread position: 134-400
Cow position: chr2:16075179-16074926 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 184
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 147, 37

Conread position: 134-405
Cow position: chr2:5870064-5869791 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 41

Conread position: 139-381
Cow position: chr2:16290789-16291018 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 176
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 122, 0

Conread position: 139-396
Cow position: chr2:15576512-15576265 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 191
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 235, 94

Conread position: 139-399
Cow position: chr2:41172994-41173251 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 66

Conread position: 139-400
Cow position: chr2:36052681-36052431 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 139-405
Cow position: chr2:2412470-2412206 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 260, 159

Conread position: 139-405
Cow position: chr2:9908240-9908505 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 197
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 86, 44

Conread position: 139-405
Cow position: chr2:47038095-47037831 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 195
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 86, 78

Conread position: 139-405
Cow position: chr2:53662036-53662300 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 196
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 226, 77

Conread position: 140-378
Cow position: chr2:64769364-64769131 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 190, 0

Conread position: 141-360
Cow position: chr2:41686837-41687053 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 189, 0

Conread position: 141-390
Cow position: chr2:2087844-2087598 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 177
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 73, 62

Conread position: 141-394
Cow position: chr2:53554293-53554533 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 85, 0

Conread position: 141-398
Cow position: chr2:20919819-20919563 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 177
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 230, 0

Conread position: 141-400
Cow position: chr2:14823431-14823669 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 190
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 41, 0

Conread position: 142-403
Cow position: chr2:2451524-2451779 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 178
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 9, 47

Conread position: 152-405
Cow position: chr2:28613993-28613741 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 182

Conread position: 153-397
Cow position: chr2:20873210-20872977 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 61, 30

Conread position: 158-377
Cow position: chr2:63291621-63291406 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 152
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 164-381
Cow position: chr2:66307757-66307542 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 86, 76

Conread position: 164-400
Cow position: chr2:73193460-73193686 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 56, 137

Conread position: 167-303
Cow position: chr2:5813048-5812913 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 131, 0

Conread position: 167-405
Cow position: chr2:78742949-78743182 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 65, 0

Conread position: 170-405
Cow position: chr2:51989576-51989343 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 55, 43

Conread position: 176-381
Cow position: chr2:55483776-55483578 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 55, 0

Conread position: 185-389
Cow position: chr2:69140303-69140503 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 138
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 115, 0

Conread position: 186-403
Cow position: chr2:52352420-52352631 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 149
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 73, 0

Conread position: 204-398
Cow position: chr2:195151-194963 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 30, 0

Conread position: 207-400
Cow position: chr2:72188079-72187888 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 7, 122

Conread position: 213-403
Cow position: chr2:28619555-28619363 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 170, 117

Conread position: 228-405
Cow position: chr2:9189600-9189427 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 133, 15

Conread position: 230-396
Cow position: chr2:574010-574176 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 115, 100

Conread position: 254-405
Cow position: chr2:247430-247284 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 258-391
Cow position: chr2:53540391-53540522 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 0

Show alignments to all cow chromosomes.