Cow genome map
| Conread name: | Lym2-sn66_E02.f |
| Conread position: | 118-381 |
| Cow position: | chr21:31515387-31515128 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 199, 11 |
| Conread position: | 118-398 |
| Cow position: | chr21:10851021-10851295 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 92, 13 |
| Conread position: | 119-405 |
| Cow position: | chr21:46916617-46916899 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 278, 10 |
| Conread position: | 119-414 |
| Cow position: | chr21:11452715-11452424 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 106, 10 |
| Conread position: | 120-398 |
| Cow position: | chr21:146870-147145 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-398 |
| Cow position: | chr21:2882797-2882522 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 120-398 |
| Cow position: | chr21:26402547-26402273 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-398 |
| Cow position: | chr21:27070026-27069748 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 19 |
| Conread position: | 120-398 |
| Cow position: | chr21:33253118-33253395 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 118, 19 |
| Conread position: | 120-398 |
| Cow position: | chr21:40270731-40270459 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-403 |
| Cow position: | chr21:3779709-3779989 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 19 |
| Conread position: | 120-403 |
| Cow position: | chr21:5840323-5840043 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 120-404 |
| Cow position: | chr21:10567618-10567890 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 277, 19 |
| Conread position: | 121-375 |
| Cow position: | chr21:26637261-26637006 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 108, 18 |
| Conread position: | 121-398 |
| Cow position: | chr21:39426005-39426275 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 121-399 |
| Cow position: | chr21:2511784-2512062 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 121-405 |
| Cow position: | chr21:12055060-12054784 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 121-405 |
| Cow position: | chr21:37046564-37046844 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 121-405 |
| Cow position: | chr21:37372179-37372461 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 278, 18 |
| Conread position: | 122-403 |
| Cow position: | chr21:1192703-1192978 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 122-405 |
| Cow position: | chr21:37935767-37936048 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 103, 17 |
| Conread position: | 123-381 |
| Cow position: | chr21:20743640-20743382 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 69, 178 |
| Conread position: | 125-396 |
| Cow position: | chr21:28256379-28256641 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 125-400 |
| Cow position: | chr21:1689214-1688939 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 92, 14 |
| Conread position: | 129-328 |
| Cow position: | chr21:4077787-4077981 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 144, 12 |
| Conread position: | 129-379 |
| Cow position: | chr21:37719069-37718822 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 18 |
| Conread position: | 129-381 |
| Cow position: | chr21:4589044-4588797 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 66, 10 |
| Conread position: | 129-398 |
| Cow position: | chr21:360593-360860 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 252, 10 |
| Conread position: | 129-398 |
| Cow position: | chr21:35144705-35144972 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 14, 202 |
| Conread position: | 129-399 |
| Cow position: | chr21:5018063-5018330 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 254, 10 |
| Conread position: | 129-405 |
| Cow position: | chr21:2417165-2417438 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 10 |
| Conread position: | 129-405 |
| Cow position: | chr21:4184854-4185127 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 129-405 |
| Cow position: | chr21:11506547-11506833 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 132-292 |
| Cow position: | chr21:5015357-5015196 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 132-332 |
| Cow position: | chr21:27566595-27566790 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 132-405 |
| Cow position: | chr21:13313711-13313979 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 133 |
| Conread position: | 134-396 |
| Cow position: | chr21:1287264-1287005 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 134-405 |
| Cow position: | chr21:9892845-9893119 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 131, 79 |
| Conread position: | 136-394 |
| Cow position: | chr21:25782597-25782847 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 215, 14 |
| Conread position: | 139-324 |
| Cow position: | chr21:446073-446258 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 139-346 |
| Cow position: | chr21:47941817-47942024 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 139-378 |
| Cow position: | chr21:467837-468060 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 102, 49 |
| Conread position: | 139-381 |
| Cow position: | chr21:34001715-34001480 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 139-398 |
| Cow position: | chr21:2540114-2539867 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 139-399 |
| Cow position: | chr21:18817595-18817336 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 193 |
| Conread position: | 139-405 |
| Cow position: | chr21:30040-30301 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 43 |
| Conread position: | 149-369 |
| Cow position: | chr21:28613074-28613281 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 154-398 |
| Cow position: | chr21:6624746-6624987 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 164-332 |
| Cow position: | chr21:2711950-2712116 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 165-382 |
| Cow position: | chr21:21222983-21222769 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 182, 120 |
| Conread position: | 169-405 |
| Cow position: | chr21:34823224-34822990 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 228, 35 |
| Conread position: | 176-405 |
| Cow position: | chr21:42914361-42914591 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 25, 38 |
| Conread position: | 182-405 |
| Cow position: | chr21:48292452-48292675 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 194, 11 |
| Conread position: | 203-398 |
| Cow position: | chr21:45782504-45782697 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 204-398 |
| Cow position: | chr21:26835914-26836106 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 169, 124 |
| Conread position: | 219-398 |
| Cow position: | chr21:2673968-2673791 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 53, 61 |
| Conread position: | 227-393 |
| Cow position: | chr21:27284499-27284663 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 227-398 |
| Cow position: | chr21:30598428-30598265 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 243-405 |
| Cow position: | chr21:27036338-27036177 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 132, 87 |
| Conread position: | 248-399 |
| Cow position: | chr21:29625676-29625528 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
Show alignments to all cow chromosomes.