Cow genome map
| Conread name: | Lym2-sn66_E02.f |
| Conread position: | 119-398 |
| Cow position: | chr28:26425441-26425166 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 119-398 |
| Cow position: | chr28:33253119-33253413 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 206, 10 |
| Conread position: | 120-287 |
| Cow position: | chr28:17389297-17389463 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-323 |
| Cow position: | chr28:2085318-2085517 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-381 |
| Cow position: | chr28:13460789-13461047 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-398 |
| Cow position: | chr28:1167061-1166789 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 94, 24 |
| Conread position: | 120-398 |
| Cow position: | chr28:1505685-1505956 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-398 |
| Cow position: | chr28:1814048-1813773 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-398 |
| Cow position: | chr28:5566970-5567244 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-398 |
| Cow position: | chr28:5938300-5938574 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-398 |
| Cow position: | chr28:7002811-7003085 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-398 |
| Cow position: | chr28:8379872-8380153 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 19 |
| Conread position: | 120-398 |
| Cow position: | chr28:17666487-17666217 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-398 |
| Cow position: | chr28:22260336-22260062 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-403 |
| Cow position: | chr28:5113481-5113201 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-403 |
| Cow position: | chr28:10581272-10580994 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 19 |
| Conread position: | 120-403 |
| Cow position: | chr28:12409410-12409138 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 71, 19 |
| Conread position: | 121-399 |
| Cow position: | chr28:10460787-10460514 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 74, 20 |
| Conread position: | 121-399 |
| Cow position: | chr28:24884161-24883883 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 121-400 |
| Cow position: | chr28:14751360-14751635 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 121-405 |
| Cow position: | chr28:6538447-6538166 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 121-405 |
| Cow position: | chr28:9179443-9179723 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 121-405 |
| Cow position: | chr28:24589668-24589955 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 122-398 |
| Cow position: | chr28:32791558-32791288 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 122-400 |
| Cow position: | chr28:8720129-8719854 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 122-403 |
| Cow position: | chr28:1217336-1217058 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 259, 17 |
| Conread position: | 122-403 |
| Cow position: | chr28:3191438-3191159 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 17 |
| Conread position: | 123-279 |
| Cow position: | chr28:7789128-7788977 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 123-356 |
| Cow position: | chr28:3019901-3019669 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 17, 208 |
| Conread position: | 125-363 |
| Cow position: | chr28:783492-783725 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 125-368 |
| Cow position: | chr28:22232601-22232360 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 178, 14 |
| Conread position: | 126-398 |
| Cow position: | chr28:5765565-5765841 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 145, 13 |
| Conread position: | 129-398 |
| Cow position: | chr28:1386567-1386310 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 129-398 |
| Cow position: | chr28:12151130-12151396 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 10 |
| Conread position: | 129-398 |
| Cow position: | chr28:24668444-24668699 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 129-404 |
| Cow position: | chr28:10072099-10072370 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 10 |
| Conread position: | 139-331 |
| Cow position: | chr28:7823375-7823566 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 139-375 |
| Cow position: | chr28:6779505-6779272 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 86, 79 |
| Conread position: | 139-398 |
| Cow position: | chr28:6231938-6231685 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 139-399 |
| Cow position: | chr28:5750866-5750617 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 139-402 |
| Cow position: | chr28:29761095-29760834 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 80, 34 |
| Conread position: | 139-406 |
| Cow position: | chr28:2724090-2723825 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 86, 79 |
| Conread position: | 141-391 |
| Cow position: | chr28:21360320-21360567 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 67 |
| Conread position: | 141-398 |
| Cow position: | chr28:7741286-7741536 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 141-403 |
| Cow position: | chr28:18519614-18519352 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 189 |
| Conread position: | 148-377 |
| Cow position: | chr28:5814218-5814443 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 127, 25 |
| Conread position: | 152-405 |
| Cow position: | chr28:7811296-7811543 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 114, 40 |
| Conread position: | 155-403 |
| Cow position: | chr28:29820845-29821092 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 226, 175 |
| Conread position: | 165-405 |
| Cow position: | chr28:484734-484498 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 231, 39 |
| Conread position: | 170-403 |
| Cow position: | chr28:13603967-13603737 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 80, 71 |
| Conread position: | 178-397 |
| Cow position: | chr28:5799169-5799386 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 48, 153 |
| Conread position: | 192-405 |
| Cow position: | chr28:2988197-2987986 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 243-405 |
| Cow position: | chr28:1954291-1954452 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 154, 87 |
| Conread position: | 248-398 |
| Cow position: | chr28:15035174-15035022 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 125, 82 |
| Conread position: | 254-405 |
| Cow position: | chr28:22042327-22042177 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 118, 76 |
Show alignments to all cow chromosomes.