Cow genome map
| Conread name: | Lym2-sn66_E02.f |
| Conread position: | 108-405 |
| Cow position: | chr29:43791190-43791486 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 117, 108 |
| Conread position: | 111-398 |
| Cow position: | chr29:42803181-42803468 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 272, 224 |
| Conread position: | 118-381 |
| Cow position: | chr29:25931760-25931502 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 118-393 |
| Cow position: | chr29:45586595-45586326 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 118-394 |
| Cow position: | chr29:2840597-2840327 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 118-399 |
| Cow position: | chr29:31182182-31182459 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 107, 21 |
| Conread position: | 118-403 |
| Cow position: | chr29:7430438-7430157 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 11 |
| Conread position: | 118-407 |
| Cow position: | chr29:13582857-13583144 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 73, 21 |
| Conread position: | 119-359 |
| Cow position: | chr29:34926259-34926494 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 106, 12 |
| Conread position: | 119-359 |
| Cow position: | chr29:38208293-38208054 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 19, 101 |
| Conread position: | 119-398 |
| Cow position: | chr29:14586701-14586977 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 10 |
| Conread position: | 120-315 |
| Cow position: | chr29:2690687-2690886 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 120-380 |
| Cow position: | chr29:5958383-5958637 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-381 |
| Cow position: | chr29:45460502-45460760 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 75, 19 |
| Conread position: | 120-398 |
| Cow position: | chr29:10647470-10647195 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 120-398 |
| Cow position: | chr29:10823193-10822928 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-398 |
| Cow position: | chr29:20251945-20252221 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 19 |
| Conread position: | 120-398 |
| Cow position: | chr29:23976904-23977178 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 19 |
| Conread position: | 120-398 |
| Cow position: | chr29:32540875-32541149 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-398 |
| Cow position: | chr29:38227759-38228032 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-398 |
| Cow position: | chr29:39078925-39078651 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-398 |
| Cow position: | chr29:43323340-43323614 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 263, 19 |
| Conread position: | 120-399 |
| Cow position: | chr29:34799024-34798754 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 120-401 |
| Cow position: | chr29:40502197-40501921 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 256, 19 |
| Conread position: | 120-403 |
| Cow position: | chr29:6265494-6265206 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 19 |
| Conread position: | 120-403 |
| Cow position: | chr29:14210788-14210508 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 120-403 |
| Cow position: | chr29:26164046-26163772 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 121-333 |
| Cow position: | chr29:15894069-15893857 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 121-399 |
| Cow position: | chr29:19885848-19886134 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 121-405 |
| Cow position: | chr29:609842-609562 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 50, 18 |
| Conread position: | 121-405 |
| Cow position: | chr29:7845163-7845450 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 121-405 |
| Cow position: | chr29:16111160-16111450 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 121-405 |
| Cow position: | chr29:18856167-18855887 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 121-405 |
| Cow position: | chr29:27980144-27979861 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 121-405 |
| Cow position: | chr29:31096600-31096319 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 276, 18 |
| Conread position: | 121-405 |
| Cow position: | chr29:32558973-32558684 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 80, 18 |
| Conread position: | 121-405 |
| Cow position: | chr29:35815194-35814912 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 122-398 |
| Cow position: | chr29:19622501-19622228 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 123-381 |
| Cow position: | chr29:41366904-41366651 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 153, 9 |
| Conread position: | 123-405 |
| Cow position: | chr29:14085341-14085063 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 269, 6 |
| Conread position: | 125-399 |
| Cow position: | chr29:9642976-9642700 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 14 |
| Conread position: | 125-400 |
| Cow position: | chr29:21238590-21238328 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 127-398 |
| Cow position: | chr29:21426237-21425971 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 247, 12 |
| Conread position: | 127-403 |
| Cow position: | chr29:19654418-19654689 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 127-405 |
| Cow position: | chr29:35297619-35297895 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 129-398 |
| Cow position: | chr29:646586-646849 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 164, 10 |
| Conread position: | 129-398 |
| Cow position: | chr29:45205292-45205554 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 129-403 |
| Cow position: | chr29:5981924-5981656 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 133-400 |
| Cow position: | chr29:32286994-32287252 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 239, 8 |
| Conread position: | 134-323 |
| Cow position: | chr29:14216762-14216948 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 134-398 |
| Cow position: | chr29:47659-47384 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 107, 75 |
| Conread position: | 134-403 |
| Cow position: | chr29:43408826-43408563 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 263, 69 |
| Conread position: | 134-405 |
| Cow position: | chr29:669265-668995 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 91, 84 |
| Conread position: | 139-372 |
| Cow position: | chr29:32804237-32804467 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 54, 15 |
| Conread position: | 139-395 |
| Cow position: | chr29:8664315-8664564 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 206, 8 |
| Conread position: | 139-400 |
| Cow position: | chr29:9620221-9620474 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 140-405 |
| Cow position: | chr29:15968062-15967799 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 142-332 |
| Cow position: | chr29:16173537-16173351 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 182-396 |
| Cow position: | chr29:15997824-15997613 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 184-405 |
| Cow position: | chr29:13920770-13920549 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 63 |
| Conread position: | 199-400 |
| Cow position: | chr29:2747573-2747380 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 206-401 |
| Cow position: | chr29:27263029-27262839 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 209-400 |
| Cow position: | chr29:13650925-13651114 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 126, 0 |
Show alignments to all cow chromosomes.