Cow genome map

Conread name: Lym2-sn66_E02.f

Conread position: 107-400
Cow position: chr5:53703576-53703288 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 189
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 82

Conread position: 113-400
Cow position: chr5:32363563-32363843 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 201
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 103, 75

Conread position: 118-381
Cow position: chr5:30579927-30580186 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 254, 11

Conread position: 118-397
Cow position: chr5:3503518-3503251 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 203
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 11, 0

Conread position: 118-399
Cow position: chr5:4018605-4018322 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 107, 21

Conread position: 118-405
Cow position: chr5:46664612-46664898 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 201
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 281, 212

Conread position: 118-405
Cow position: chr5:46668551-46668827 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 198
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 23, 64

Conread position: 119-396
Cow position: chr5:10842780-10842509 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 188
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 116, 10

Conread position: 119-398
Cow position: chr5:4069817-4070080 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 203
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 95, 20

Conread position: 119-398
Cow position: chr5:54792039-54791761 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 206
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 50, 21

Conread position: 119-399
Cow position: chr5:35300697-35300970 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 203
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 106, 10

Conread position: 119-403
Cow position: chr5:6154302-6154023 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 120-315
Cow position: chr5:7274429-7274620 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 135
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr5:2915047-2915321 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 19

Conread position: 120-398
Cow position: chr5:10919423-10919696 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 19

Conread position: 120-398
Cow position: chr5:34697201-34697476 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 19

Conread position: 120-398
Cow position: chr5:37732949-37733219 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 199
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 253, 19

Conread position: 120-398
Cow position: chr5:46737976-46737704 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 201
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr5:55628589-55628863 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr5:57481941-57481667 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-399
Cow position: chr5:49519160-49519433 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 201
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 9, 0

Conread position: 120-402
Cow position: chr5:73488960-73488681 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 19

Conread position: 120-403
Cow position: chr5:1341434-1341154 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 19

Conread position: 120-403
Cow position: chr5:24099268-24099543 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-403
Cow position: chr5:48808141-48807860 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 19

Conread position: 120-403
Cow position: chr5:64781417-64781137 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 19

Conread position: 120-404
Cow position: chr5:4385840-4386123 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 207
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 104, 19

Conread position: 121-315
Cow position: chr5:48467682-48467489 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 135
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 104, 18

Conread position: 121-323
Cow position: chr5:44784315-44784115 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 104, 18

Conread position: 121-345
Cow position: chr5:59061212-59061433 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 104, 18

Conread position: 121-359
Cow position: chr5:241797-242028 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 104, 18

Conread position: 121-372
Cow position: chr5:46776668-46776916 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 104, 18

Conread position: 121-380
Cow position: chr5:32773373-32773629 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 104, 18

Conread position: 121-398
Cow position: chr5:32947655-32947931 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 203
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 105, 18

Conread position: 121-399
Cow position: chr5:3965047-3965323 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 201
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 24, 84

Conread position: 121-399
Cow position: chr5:18121879-18121610 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 193
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 104, 18

Conread position: 121-399
Cow position: chr5:26078599-26078321 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 196
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 151, 18

Conread position: 121-405
Cow position: chr5:4757565-4757284 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 197
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 276, 18

Conread position: 121-405
Cow position: chr5:6588424-6588129 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 200
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr5:10775670-10775388 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 206
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 262, 18

Conread position: 121-405
Cow position: chr5:18664390-18664676 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr5:23959717-23959436 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr5:27908674-27908387 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 202
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr5:38073630-38073912 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr5:44460081-44460363 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr5:45181546-45181264 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 114, 18

Conread position: 121-405
Cow position: chr5:46807910-46808192 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr5:47830473-47830194 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 193
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr5:58196614-58196896 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 104, 18

Conread position: 121-408
Cow position: chr5:42505602-42505888 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 104, 18

Conread position: 122-381
Cow position: chr5:3786521-3786775 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 192
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 17, 0

Conread position: 123-405
Cow position: chr5:12643128-12642860 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 206
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 15, 25

Conread position: 125-400
Cow position: chr5:46629587-46629306 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 207
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 19, 219

Conread position: 125-404
Cow position: chr5:41961121-41960854 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 212
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 249, 14

Conread position: 129-370
Cow position: chr5:28241660-28241897 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 174
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 10, 0

Conread position: 129-381
Cow position: chr5:54861448-54861208 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 171
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 129-396
Cow position: chr5:14784755-14784503 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 185
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 10, 0

Conread position: 129-398
Cow position: chr5:41554724-41554464 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 10

Conread position: 129-400
Cow position: chr5:27002616-27002873 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 187
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 97, 0

Conread position: 129-400
Cow position: chr5:51770337-51770075 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 189
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 262, 10

Conread position: 129-404
Cow position: chr5:59282926-59283196 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 10

Conread position: 129-405
Cow position: chr5:39246204-39245932 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 10

Conread position: 129-405
Cow position: chr5:46005246-46004975 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 97, 10

Conread position: 132-405
Cow position: chr5:28012261-28012536 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 200

Conread position: 134-334
Cow position: chr5:47893929-47893728 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 135
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 134-368
Cow position: chr5:46645574-46645801 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 69, 0

Conread position: 134-385
Cow position: chr5:41528163-41527912 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 134-398
Cow position: chr5:29766495-29766768 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 171

Conread position: 134-402
Cow position: chr5:49130166-49130423 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 92, 0

Conread position: 139-333
Cow position: chr5:28950249-28950053 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 84, 141

Conread position: 139-351
Cow position: chr5:35526417-35526622 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 70, 0

Conread position: 139-374
Cow position: chr5:49591483-49591251 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 97, 0

Conread position: 139-393
Cow position: chr5:31707166-31707417 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 86, 74

Conread position: 139-398
Cow position: chr5:27056066-27055805 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 194
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 26, 193

Conread position: 139-403
Cow position: chr5:52613336-52613074 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 176
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 48, 140

Conread position: 139-409
Cow position: chr5:45700930-45701197 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 102

Conread position: 140-330
Cow position: chr5:36444061-36443872 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 141-398
Cow position: chr5:52434172-52434417 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 176
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 141-400
Cow position: chr5:1227300-1227549 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 215, 58

Conread position: 141-403
Cow position: chr5:59639399-59639653 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 178
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 116, 51

Conread position: 148-400
Cow position: chr5:32308766-32308520 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 13, 0

Conread position: 154-381
Cow position: chr5:18273374-18273594 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 37, 0

Conread position: 156-403
Cow position: chr5:40788693-40788944 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 171
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 60, 88

Conread position: 156-405
Cow position: chr5:13046084-13046331 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 216, 69

Conread position: 158-398
Cow position: chr5:18401055-18400819 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 162
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 59, 85

Conread position: 166-405
Cow position: chr5:307685-307446 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 233, 164

Conread position: 186-400
Cow position: chr5:41465736-41465946 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 144, 0

Conread position: 188-397
Cow position: chr5:9419406-9419195 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 43, 146

Conread position: 209-405
Cow position: chr5:31100738-31100542 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 163, 121

Conread position: 227-398
Cow position: chr5:10856112-10855944 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 103, 0

Show alignments to all cow chromosomes.