Cow genome map

Conread name: Lym2-sn66_E02.f

Conread position: 108-398
Cow position: chr6:702939-703229 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 60, 208

Conread position: 108-398
Cow position: chr6:8760566-8760280 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 209
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 13, 38

Conread position: 118-398
Cow position: chr6:15140443-15140165 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 200
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 156, 11

Conread position: 118-398
Cow position: chr6:20560368-20560091 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 199
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 150, 11

Conread position: 118-398
Cow position: chr6:40553835-40553562 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 197
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 244, 10

Conread position: 118-398
Cow position: chr6:41190060-41190331 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 118-403
Cow position: chr6:3487683-3487408 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 200
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 0

Conread position: 119-371
Cow position: chr6:185729-185482 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 106, 10

Conread position: 119-388
Cow position: chr6:16052619-16052883 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 194
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 106, 10

Conread position: 119-398
Cow position: chr6:28169641-28169916 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 119-398
Cow position: chr6:30274153-30273883 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 10

Conread position: 119-405
Cow position: chr6:2375438-2375719 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 202
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 106, 10

Conread position: 119-405
Cow position: chr6:3150003-3150283 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 203
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 106, 10

Conread position: 119-405
Cow position: chr6:13310621-13310336 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 10

Conread position: 119-405
Cow position: chr6:65821234-65820952 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 205
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 106, 10

Conread position: 120-323
Cow position: chr6:27471341-27471539 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 120-359
Cow position: chr6:51730836-51731071 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 94, 19

Conread position: 120-381
Cow position: chr6:1821888-1821629 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 112, 19

Conread position: 120-381
Cow position: chr6:51715278-51715533 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 19, 0

Conread position: 120-382
Cow position: chr6:185044-184787 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 183
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 35, 19

Conread position: 120-396
Cow position: chr6:52693755-52694026 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 19

Conread position: 120-398
Cow position: chr6:3888746-3888490 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 190
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 263, 19

Conread position: 120-398
Cow position: chr6:5949039-5948765 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr6:11724369-11724102 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 200
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 263, 19

Conread position: 120-398
Cow position: chr6:15279073-15278799 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 120-398
Cow position: chr6:17046797-17047065 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 202
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr6:24239796-24240065 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr6:34891386-34891112 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr6:39334131-39333857 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr6:40866579-40866312 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 203
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 94, 19

Conread position: 120-398
Cow position: chr6:51086681-51086955 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr6:55542510-55542252 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 197
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr6:65881951-65882224 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 19

Conread position: 120-399
Cow position: chr6:8202921-8203198 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 19

Conread position: 120-399
Cow position: chr6:27529266-27528983 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 19

Conread position: 120-400
Cow position: chr6:21973395-21973667 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-402
Cow position: chr6:58027413-58027692 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 207
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 38, 19

Conread position: 120-403
Cow position: chr6:3276636-3276353 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 19

Conread position: 120-403
Cow position: chr6:6567328-6567609 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 203
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 278, 19

Conread position: 120-403
Cow position: chr6:25214962-25215235 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 19, 0

Conread position: 120-403
Cow position: chr6:43792975-43792698 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 19

Conread position: 120-403
Cow position: chr6:47042463-47042182 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 19

Conread position: 120-405
Cow position: chr6:66232552-66232837 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 106, 19

Conread position: 121-369
Cow position: chr6:7140722-7140479 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 172
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 18, 0

Conread position: 121-386
Cow position: chr6:40252400-40252660 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 187
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 104, 18

Conread position: 121-396
Cow position: chr6:43618455-43618727 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 191
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 104, 18

Conread position: 121-398
Cow position: chr6:39438504-39438777 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 121-399
Cow position: chr6:1404853-1404573 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 194
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 104, 18

Conread position: 121-399
Cow position: chr6:1410919-1410639 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 194
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr6:12665580-12665298 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr6:13104797-13105081 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 208
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr6:13847765-13848047 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 202
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 89, 18

Conread position: 121-405
Cow position: chr6:26670126-26669842 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 193
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 193, 18

Conread position: 121-405
Cow position: chr6:27170314-27170597 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 203
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr6:28490829-28490543 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 182, 18

Conread position: 121-405
Cow position: chr6:40275827-40276108 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 203
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr6:43999801-44000082 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 278, 18

Conread position: 121-405
Cow position: chr6:44149817-44149536 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 196
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 114, 18

Conread position: 121-405
Cow position: chr6:68027661-68027948 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 192
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 104, 18

Conread position: 122-381
Cow position: chr6:35875976-35875720 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 188
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 17, 0

Conread position: 122-399
Cow position: chr6:13944648-13944922 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 192
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 103, 17

Conread position: 123-383
Cow position: chr6:65941081-65940824 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 169
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 120, 22

Conread position: 123-399
Cow position: chr6:31565414-31565145 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 185
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 189, 44

Conread position: 129-263
Cow position: chr6:38900426-38900293 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 100
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 129-386
Cow position: chr6:40316128-40316390 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 96, 10

Conread position: 129-390
Cow position: chr6:13316724-13316467 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 10

Conread position: 129-398
Cow position: chr6:30479849-30480115 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 10

Conread position: 129-398
Cow position: chr6:65842372-65842639 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 10

Conread position: 129-400
Cow position: chr6:6475120-6474849 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 10

Conread position: 129-402
Cow position: chr6:56042972-56042700 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 143, 10

Conread position: 129-403
Cow position: chr6:538738-539002 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 186
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 77, 10

Conread position: 129-404
Cow position: chr6:1099411-1099139 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 187
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 40, 10

Conread position: 129-405
Cow position: chr6:10644493-10644762 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 10

Conread position: 129-405
Cow position: chr6:44032540-44032813 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 195
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 96, 10

Conread position: 129-405
Cow position: chr6:46573860-46573586 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 200
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 96, 10

Conread position: 129-405
Cow position: chr6:58601228-58601504 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 10

Conread position: 129-406
Cow position: chr6:38271637-38271911 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 10

Conread position: 130-399
Cow position: chr6:39910082-39910347 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 190
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 95, 24

Conread position: 132-381
Cow position: chr6:59918326-59918079 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 183
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 198, 0

Conread position: 132-399
Cow position: chr6:65928714-65928973 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 189
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 64, 0

Conread position: 134-396
Cow position: chr6:50634698-50634951 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 180
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 238, 60

Conread position: 134-403
Cow position: chr6:914382-914651 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 200
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 249, 155

Conread position: 139-357
Cow position: chr6:64716742-64716958 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 191, 0

Conread position: 139-378
Cow position: chr6:58065490-58065733 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 181
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 90, 26

Conread position: 139-398
Cow position: chr6:28105102-28104843 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 11

Conread position: 139-403
Cow position: chr6:28133687-28133951 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 42

Conread position: 139-405
Cow position: chr6:330709-330442 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 195
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 86, 15

Conread position: 145-373
Cow position: chr6:25794051-25793825 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 185, 0

Conread position: 166-405
Cow position: chr6:50646401-50646163 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 59, 52

Conread position: 175-405
Cow position: chr6:18973616-18973385 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 175
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 147, 164

Conread position: 186-379
Cow position: chr6:6157348-6157534 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 134
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 186-398
Cow position: chr6:15477966-15478168 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 126, 10

Conread position: 191-404
Cow position: chr6:33991590-33991383 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 39, 0

Conread position: 191-405
Cow position: chr6:7178486-7178266 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 165, 18

Conread position: 213-398
Cow position: chr6:36527131-36527313 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 174, 30

Conread position: 226-394
Cow position: chr6:21836350-21836184 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 151, 104

Conread position: 227-405
Cow position: chr6:11871801-11871625 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 172, 71

Conread position: 247-398
Cow position: chr6:1535713-1535563 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 140, 87

Conread position: 254-399
Cow position: chr6:40326286-40326428 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 76, 0

Show alignments to all cow chromosomes.