Cow genome map

Conread name: Lym2-sn66_E02.f

Conread position: 114-376
Cow position: chr7:7257995-7258255 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 181
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 9, 27

Conread position: 114-398
Cow position: chr7:42870964-42871246 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 52

Conread position: 116-363
Cow position: chr7:14255448-14255694 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 169
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 8, 61

Conread position: 118-381
Cow position: chr7:61578284-61578542 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 190
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 13, 0

Conread position: 118-398
Cow position: chr7:21986256-21986529 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 11

Conread position: 118-398
Cow position: chr7:33405411-33405139 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 119-405
Cow position: chr7:3300326-3300044 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 202
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 106, 10

Conread position: 119-405
Cow position: chr7:20514946-20514664 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 203
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 106, 10

Conread position: 119-405
Cow position: chr7:29471287-29471571 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 20

Conread position: 120-381
Cow position: chr7:24807626-24807370 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 189
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 19, 0

Conread position: 120-381
Cow position: chr7:45948312-45948057 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 189
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr7:1371816-1371541 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 19

Conread position: 120-398
Cow position: chr7:21234184-21233905 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 199
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 69, 19

Conread position: 120-398
Cow position: chr7:21929979-21930240 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 205
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr7:39792599-39792873 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-402
Cow position: chr7:14138767-14138486 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 19

Conread position: 120-403
Cow position: chr7:445511-445241 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 198
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 19, 0

Conread position: 120-403
Cow position: chr7:5309279-5309004 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 204
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 21, 0

Conread position: 120-403
Cow position: chr7:8144411-8144124 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 206
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 41, 19

Conread position: 120-403
Cow position: chr7:13533071-13532792 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 207
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 275, 19

Conread position: 120-403
Cow position: chr7:21126833-21126552 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 19

Conread position: 120-403
Cow position: chr7:27787464-27787739 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 19, 0

Conread position: 120-403
Cow position: chr7:34486745-34487026 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 19

Conread position: 120-403
Cow position: chr7:46901243-46900972 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 199
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 9, 0

Conread position: 120-403
Cow position: chr7:64240180-64239894 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 206
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 61, 19

Conread position: 120-403
Cow position: chr7:67799664-67799933 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 206
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 277, 19

Conread position: 120-405
Cow position: chr7:525805-526088 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 21

Conread position: 120-405
Cow position: chr7:11463216-11462937 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 198
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 105, 19

Conread position: 120-405
Cow position: chr7:19269599-19269321 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 208
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 117, 19

Conread position: 121-367
Cow position: chr7:60794471-60794226 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 81, 18

Conread position: 121-379
Cow position: chr7:49604581-49604838 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 186
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 104, 18

Conread position: 121-398
Cow position: chr7:51015095-51015364 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 121-399
Cow position: chr7:545673-545950 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 193
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 181, 18

Conread position: 121-399
Cow position: chr7:27101464-27101186 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 199
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr7:6580018-6580300 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr7:6647827-6647540 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 199
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 85, 18

Conread position: 121-405
Cow position: chr7:11447389-11447672 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 202
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr7:20798613-20798330 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 203
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 34, 18

Conread position: 121-405
Cow position: chr7:65811662-65811945 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 104, 18

Conread position: 122-403
Cow position: chr7:55537090-55536816 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 209
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 119, 17

Conread position: 123-398
Cow position: chr7:57564261-57563994 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 189
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 158, 59

Conread position: 123-402
Cow position: chr7:67675930-67676207 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 206
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 242, 35

Conread position: 123-405
Cow position: chr7:67429402-67429685 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 207

Conread position: 125-400
Cow position: chr7:39097655-39097402 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 14, 0

Conread position: 129-302
Cow position: chr7:59684022-59684191 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 129-394
Cow position: chr7:59679686-59679946 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 192
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 177, 12

Conread position: 129-394
Cow position: chr7:67494948-67495210 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 197
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 85, 15

Conread position: 129-396
Cow position: chr7:48635268-48635527 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 129-398
Cow position: chr7:995354-995623 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 194
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 244, 10

Conread position: 129-398
Cow position: chr7:1452481-1452750 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 199
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 173, 10

Conread position: 129-398
Cow position: chr7:54643653-54643380 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 197
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 245, 0

Conread position: 129-400
Cow position: chr7:15810620-15810353 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 10

Conread position: 129-402
Cow position: chr7:10430587-10430314 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 202

Conread position: 129-404
Cow position: chr7:68481392-68481659 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 199
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 243, 10

Conread position: 129-405
Cow position: chr7:3156302-3156578 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 12

Conread position: 129-405
Cow position: chr7:63386565-63386846 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 207
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 99, 12

Conread position: 129-409
Cow position: chr7:33332404-33332672 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 134-331
Cow position: chr7:58994436-58994632 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 139, 75

Conread position: 134-378
Cow position: chr7:7211154-7210913 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 165
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 80, 73

Conread position: 134-398
Cow position: chr7:34150149-34150409 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 91

Conread position: 134-398
Cow position: chr7:54671239-54670969 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 202
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 138, 127

Conread position: 139-315
Cow position: chr7:59138507-59138680 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 139-398
Cow position: chr7:20785127-20784870 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 197
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 233, 15

Conread position: 139-400
Cow position: chr7:24058288-24058553 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 189
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 167, 219

Conread position: 139-400
Cow position: chr7:53358396-53358130 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 182
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 77, 180

Conread position: 139-403
Cow position: chr7:14214520-14214256 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 192

Conread position: 139-403
Cow position: chr7:38397662-38397925 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 75, 68

Conread position: 139-405
Cow position: chr7:16027-15761 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 189
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 258, 191

Conread position: 139-405
Cow position: chr7:6720991-6721258 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 189
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 86, 77

Conread position: 139-405
Cow position: chr7:20774485-20774222 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 184
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 191, 0

Conread position: 139-405
Cow position: chr7:25440357-25440615 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 185
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 96, 47

Conread position: 139-405
Cow position: chr7:48805890-48805621 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 193
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 244, 188

Conread position: 140-405
Cow position: chr7:19989876-19990139 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 88, 17

Conread position: 141-400
Cow position: chr7:29369171-29368918 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 63

Conread position: 144-399
Cow position: chr7:23837425-23837675 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 175
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 36, 0

Conread position: 152-405
Cow position: chr7:33312090-33311838 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 187
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 73, 66

Conread position: 158-390
Cow position: chr7:27348810-27348583 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 172, 0

Conread position: 171-381
Cow position: chr7:1609766-1609558 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 162
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 159, 0

Conread position: 173-368
Cow position: chr7:5663431-5663628 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 71, 30

Conread position: 192-402
Cow position: chr7:65337901-65337694 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 120, 8

Conread position: 200-398
Cow position: chr7:66905631-66905825 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 183, 32

Conread position: 204-399
Cow position: chr7:52763189-52763385 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 6, 15

Conread position: 248-396
Cow position: chr7:49829670-49829521 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 119, 80

Conread position: 248-405
Cow position: chr7:6630345-6630189 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 149, 82

Conread position: 248-405
Cow position: chr7:58875002-58875157 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 149, 50

Conread position: 255-399
Cow position: chr7:5261962-5261820 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 74, 0

Show alignments to all cow chromosomes.