Cow genome map

Conread name: Lym2-sn66_E02.f

Conread position: 109-405
Cow position: chr9:64015983-64015691 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 207
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 116, 20

Conread position: 112-396
Cow position: chr9:651356-651075 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 26, 121

Conread position: 115-398
Cow position: chr9:26083862-26083584 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 197
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 24, 0

Conread position: 118-346
Cow position: chr9:59173477-59173257 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 166
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 11, 0

Conread position: 118-398
Cow position: chr9:3543529-3543803 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 209
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 96, 13

Conread position: 118-403
Cow position: chr9:10322472-10322751 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 96, 11

Conread position: 118-405
Cow position: chr9:8166222-8165930 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 212
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 68, 32

Conread position: 119-398
Cow position: chr9:2171715-2171995 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 200
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 264, 10

Conread position: 120-359
Cow position: chr9:42569573-42569807 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 19, 0

Conread position: 120-394
Cow position: chr9:30673034-30673305 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-396
Cow position: chr9:7061413-7061142 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 200
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr9:6249968-6250240 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr9:17305309-17305035 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr9:22654241-22654517 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 200
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 253, 19

Conread position: 120-398
Cow position: chr9:27035351-27035624 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 202
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr9:28022472-28022747 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 202
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 203, 19

Conread position: 120-398
Cow position: chr9:29628081-29627809 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 204
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 253, 19

Conread position: 120-398
Cow position: chr9:31808250-31808518 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr9:32969619-32969889 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 200
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr9:37162145-37161872 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-398
Cow position: chr9:51181517-51181236 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 204
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 186, 19

Conread position: 120-398
Cow position: chr9:59482123-59481855 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 201
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 19, 0

Conread position: 120-399
Cow position: chr9:42310354-42310621 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-399
Cow position: chr9:59536765-59537040 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 200
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 185, 19

Conread position: 120-400
Cow position: chr9:9013769-9014041 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 207
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 263, 19

Conread position: 120-402
Cow position: chr9:60277347-60277068 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 200
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 19, 0

Conread position: 120-403
Cow position: chr9:5004643-5004920 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 197
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 258, 18

Conread position: 120-403
Cow position: chr9:16176440-16176720 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 19

Conread position: 120-403
Cow position: chr9:29027540-29027263 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 120-403
Cow position: chr9:37970528-37970247 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 19

Conread position: 120-405
Cow position: chr9:16629996-16629718 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 191
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 277, 19

Conread position: 121-300
Cow position: chr9:36725170-36725347 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 127
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 104, 18

Conread position: 121-330
Cow position: chr9:6829647-6829441 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 7, 19

Conread position: 121-380
Cow position: chr9:221859-221599 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 180
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 87, 18

Conread position: 121-381
Cow position: chr9:27935049-27935305 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 187
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 104, 18

Conread position: 121-390
Cow position: chr9:3005578-3005316 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 18, 0

Conread position: 121-398
Cow position: chr9:1980941-1981216 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 120, 18

Conread position: 121-399
Cow position: chr9:50791381-50791655 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 104, 18

Conread position: 121-404
Cow position: chr9:4533164-4533438 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 205
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 264, 18

Conread position: 121-405
Cow position: chr9:780136-779859 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 276, 18

Conread position: 121-405
Cow position: chr9:1075548-1075264 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr9:1251328-1251038 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 201
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr9:3148602-3148321 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr9:4943142-4942857 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 200
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr9:25035043-25034760 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 198
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr9:25903179-25903459 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr9:28440477-28440759 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 202
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 104, 18

Conread position: 121-405
Cow position: chr9:31065388-31065668 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 276, 18

Conread position: 121-405
Cow position: chr9:51211349-51211631 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 104, 18

Conread position: 122-396
Cow position: chr9:20308483-20308212 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 192
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 76, 212

Conread position: 122-398
Cow position: chr9:10937265-10937536 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 200
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 16, 46

Conread position: 122-398
Cow position: chr9:47002863-47003136 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 195
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 17, 0

Conread position: 123-404
Cow position: chr9:43664473-43664743 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 125-381
Cow position: chr9:7003477-7003725 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 189
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 84, 0

Conread position: 125-390
Cow position: chr9:2209964-2210227 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 191
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 13, 82

Conread position: 125-400
Cow position: chr9:4649921-4649655 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 187
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 14, 0

Conread position: 129-355
Cow position: chr9:8402206-8402427 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 44, 0

Conread position: 129-379
Cow position: chr9:18509136-18508889 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 10, 0

Conread position: 129-389
Cow position: chr9:3763681-3763933 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 191
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 10, 0

Conread position: 129-390
Cow position: chr9:2498305-2498061 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 187
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 10, 0

Conread position: 129-398
Cow position: chr9:2186555-2186810 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 193
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 10, 0

Conread position: 129-398
Cow position: chr9:25187785-25188039 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 199
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 35, 10

Conread position: 129-398
Cow position: chr9:54925229-54925494 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 195
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 175, 10

Conread position: 129-401
Cow position: chr9:50729455-50729192 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 186
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 10, 0

Conread position: 129-402
Cow position: chr9:2867297-2867041 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 183
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 129-403
Cow position: chr9:3566169-3565898 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 268, 10

Conread position: 129-403
Cow position: chr9:34722582-34722852 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 204
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 23, 10

Conread position: 129-405
Cow position: chr9:22431954-22432229 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 10

Conread position: 132-403
Cow position: chr9:39731375-39731112 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 181
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 133, 0

Conread position: 132-405
Cow position: chr9:45874013-45874288 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 195
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 93, 84

Conread position: 134-398
Cow position: chr9:5515100-5515360 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 188
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 57, 77

Conread position: 135-403
Cow position: chr9:2476441-2476705 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 176
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 171, 9

Conread position: 139-398
Cow position: chr9:9706233-9706486 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 176
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 250, 51

Conread position: 139-398
Cow position: chr9:26102400-26102152 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 178
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 19, 0

Conread position: 139-399
Cow position: chr9:13475100-13474847 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 189
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 123, 0

Conread position: 139-405
Cow position: chr9:17063703-17063432 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 200
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 86, 79

Conread position: 139-405
Cow position: chr9:28678656-28678922 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 197
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 86, 77

Conread position: 140-398
Cow position: chr9:828448-828190 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 188
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 65, 57

Conread position: 154-398
Cow position: chr9:239791-239551 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 167
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 82, 55

Conread position: 155-395
Cow position: chr9:29329339-29329573 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 161
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 63, 21

Conread position: 167-370
Cow position: chr9:2492378-2492181 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 138
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 177-399
Cow position: chr9:9824875-9825094 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 48, 41

Conread position: 183-398
Cow position: chr9:21410023-21410238 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 198, 147

Conread position: 191-390
Cow position: chr9:3804282-3804475 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 176, 142

Conread position: 193-405
Cow position: chr9:44818899-44819098 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 204, 45

Conread position: 200-402
Cow position: chr9:6977084-6977279 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 130, 0

Conread position: 226-398
Cow position: chr9:27782955-27783128 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 12, 106

Conread position: 305-403
Cow position: chr9:1995540-1995442 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 93, 29

Show alignments to all cow chromosomes.