Cow genome map
| Conread name: | Lym2-sn67_H09.f |
| Conread position: | 207-554 |
| Cow position: | chr12:21253245-21253592 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 54, 22 |
| Conread position: | 216-553 |
| Cow position: | chr12:24977433-24977803 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 154 |
| Conread position: | 217-452 |
| Cow position: | chr12:11581188-11580941 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 62, 153 |
| Conread position: | 217-457 |
| Cow position: | chr12:20843987-20843742 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 27, 61 |
| Conread position: | 217-465 |
| Cow position: | chr12:42606886-42607149 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 62, 242 |
| Conread position: | 217-490 |
| Cow position: | chr12:22570445-22570742 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 27, 279 |
| Conread position: | 217-491 |
| Cow position: | chr12:31202105-31202397 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 27, 246 |
| Conread position: | 217-550 |
| Cow position: | chr12:3362324-3361958 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-552 |
| Cow position: | chr12:18465308-18464984 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 20, 98 |
| Conread position: | 217-553 |
| Cow position: | chr12:48471499-48471859 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 217-555 |
| Cow position: | chr12:20996703-20997067 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 40, 157 |
| Conread position: | 217-615 |
| Cow position: | chr12:6405281-6405694 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 217-615 |
| Cow position: | chr12:8138757-8139162 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 27, 109 |
| Conread position: | 217-615 |
| Cow position: | chr12:21386859-21387294 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 296 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 27, 320 |
| Conread position: | 217-615 |
| Cow position: | chr12:25099692-25100125 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-615 |
| Cow position: | chr12:27854580-27855016 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-615 |
| Cow position: | chr12:27931526-27931960 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 217-615 |
| Cow position: | chr12:35345920-35345506 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 47 |
| Conread position: | 217-615 |
| Cow position: | chr12:42858153-42858587 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 342 |
| Conread position: | 218-530 |
| Cow position: | chr12:1776587-1776925 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 38, 23 |
| Conread position: | 218-557 |
| Cow position: | chr12:8676738-8677082 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 220-556 |
| Cow position: | chr12:5145047-5144703 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 251 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 50, 27 |
| Conread position: | 220-615 |
| Cow position: | chr12:14695388-14694964 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 291 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 11, 66 |
| Conread position: | 221-556 |
| Cow position: | chr12:3209325-3208972 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 27, 315 |
| Conread position: | 221-560 |
| Cow position: | chr12:21943119-21942753 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 20, 283 |
| Conread position: | 221-613 |
| Cow position: | chr12:1403845-1403444 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 26 |
| Conread position: | 221-615 |
| Cow position: | chr12:11099574-11099184 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 26 |
| Conread position: | 226-615 |
| Cow position: | chr12:599996-600410 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 183 |
| Conread position: | 226-615 |
| Cow position: | chr12:17980085-17979684 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 284 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 233-613 |
| Cow position: | chr12:1870645-1870262 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 82, 17 |
| Conread position: | 233-614 |
| Cow position: | chr12:28005261-28004876 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 8, 100 |
| Conread position: | 241-613 |
| Cow position: | chr12:21128472-21128092 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 38, 109 |
| Conread position: | 243-482 |
| Cow position: | chr12:1888206-1888459 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 170 |
| Conread position: | 243-557 |
| Cow position: | chr12:32654902-32654561 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 35, 327 |
| Conread position: | 322-519 |
| Cow position: | chr12:35313140-35313340 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 322-611 |
| Cow position: | chr12:43030124-43030432 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 322-615 |
| Cow position: | chr12:23140935-23141247 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 322-615 |
| Cow position: | chr12:25262208-25262518 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 331-555 |
| Cow position: | chr12:29442654-29442436 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 19, 54 |
| Conread position: | 357-615 |
| Cow position: | chr12:12293180-12292920 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 358-555 |
| Cow position: | chr12:36428743-36428540 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 52 |
| Conread position: | 358-615 |
| Cow position: | chr12:36337998-36337729 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 20, 125 |
| Conread position: | 358-615 |
| Cow position: | chr12:36368052-36367774 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 20, 125 |
| Conread position: | 358-615 |
| Cow position: | chr12:36449787-36449515 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 20, 125 |
| Conread position: | 380-615 |
| Cow position: | chr12:32677747-32677987 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 6, 55 |
| Conread position: | 444-615 |
| Cow position: | chr12:21199089-21198910 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 458-615 |
| Cow position: | chr12:22204629-22204794 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 103, 0 |
Show alignments to all cow chromosomes.