Cow genome map

Conread name: Lym2-sn67_H09.f

Conread position: 200-556
Cow position: chr15:3889938-3889564 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 244
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 31, 8

Conread position: 214-615
Cow position: chr15:14581320-14581754 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 223

Conread position: 216-539
Cow position: chr15:4766204-4765875 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 215
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 89, 68

Conread position: 217-428
Cow position: chr15:44071607-44071398 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 53, 13

Conread position: 217-431
Cow position: chr15:24794861-24794630 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 172
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 34, 0

Conread position: 217-497
Cow position: chr15:2013595-2013297 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 217
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 27, 199

Conread position: 217-527
Cow position: chr15:4823494-4823178 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 217
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 31, 69

Conread position: 217-546
Cow position: chr15:1299511-1299881 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 217-555
Cow position: chr15:445652-445290 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 250
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 27, 299

Conread position: 217-560
Cow position: chr15:6552779-6553151 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 261
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 24, 166

Conread position: 217-560
Cow position: chr15:21450722-21450348 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 211

Conread position: 217-565
Cow position: chr15:50122895-50123270 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 264
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 56, 0

Conread position: 217-565
Cow position: chr15:50148117-50147752 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 251
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 27, 246

Conread position: 217-606
Cow position: chr15:3008802-3009228 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 288
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 27, 0

Conread position: 217-611
Cow position: chr15:32712260-32711835 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 289
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 62, 142

Conread position: 217-612
Cow position: chr15:580465-580045 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 19

Conread position: 217-612
Cow position: chr15:6485616-6485196 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 217-612
Cow position: chr15:7235292-7234866 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 301
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 27, 242

Conread position: 217-612
Cow position: chr15:35646638-35647063 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 187

Conread position: 217-612
Cow position: chr15:36668758-36668356 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 292
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 25, 125

Conread position: 217-612
Cow position: chr15:53409954-53409526 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 291
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 27, 323

Conread position: 217-615
Cow position: chr15:1773540-1773104 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 302
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 27, 0

Conread position: 217-615
Cow position: chr15:1783279-1782841 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 302
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 27, 203

Conread position: 217-615
Cow position: chr15:2077670-2077264 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 13

Conread position: 217-615
Cow position: chr15:2646613-2647049 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 299
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 27, 0

Conread position: 217-615
Cow position: chr15:4197503-4197068 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 295
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 27, 0

Conread position: 217-615
Cow position: chr15:4386792-4386366 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 278

Conread position: 217-615
Cow position: chr15:4679301-4678881 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 330

Conread position: 217-615
Cow position: chr15:4951098-4950670 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 206

Conread position: 217-615
Cow position: chr15:6079783-6079359 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 169

Conread position: 217-615
Cow position: chr15:6154920-6155337 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 110

Conread position: 217-615
Cow position: chr15:7261641-7261217 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 304

Conread position: 217-615
Cow position: chr15:8751440-8751008 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 297
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 24, 140

Conread position: 217-615
Cow position: chr15:15346071-15346508 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 217-615
Cow position: chr15:18577754-18577317 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 217-615
Cow position: chr15:24296127-24295704 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 44

Conread position: 217-615
Cow position: chr15:28985995-28986431 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 296
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 24, 65

Conread position: 217-615
Cow position: chr15:32479568-32479986 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 271
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 26, 131

Conread position: 217-615
Cow position: chr15:36625234-36625665 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 301
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 27, 82

Conread position: 217-615
Cow position: chr15:51675755-51675324 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 124

Conread position: 217-615
Cow position: chr15:51715950-51715535 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 249
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 9, 68

Conread position: 218-615
Cow position: chr15:35736821-35736395 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 22

Conread position: 220-543
Cow position: chr15:6383139-6383487 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 243
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 56, 19

Conread position: 220-554
Cow position: chr15:11626698-11626364 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 240
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 19, 93

Conread position: 220-613
Cow position: chr15:18331799-18332221 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 117

Conread position: 220-615
Cow position: chr15:2588415-2588847 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 307
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 24, 200

Conread position: 220-615
Cow position: chr15:3260287-3260712 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 68

Conread position: 220-615
Cow position: chr15:20750430-20749996 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 295
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 24, 0

Conread position: 220-615
Cow position: chr15:21664705-21665140 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 220-615
Cow position: chr15:35752293-35752712 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 81

Conread position: 221-452
Cow position: chr15:3182034-3182280 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 177
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 16, 188

Conread position: 221-452
Cow position: chr15:9912199-9912444 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 178
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 56, 32

Conread position: 221-557
Cow position: chr15:53299500-53299156 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 246
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 20, 193

Conread position: 221-590
Cow position: chr15:24718367-24717974 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 274
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 29, 90

Conread position: 221-615
Cow position: chr15:4962665-4962240 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 293
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 26, 67

Conread position: 221-615
Cow position: chr15:8100501-8100076 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 29

Conread position: 222-613
Cow position: chr15:17149156-17148736 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 289
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 5, 54

Conread position: 226-540
Cow position: chr15:32492846-32493188 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 93

Conread position: 226-615
Cow position: chr15:2926340-2925918 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 151

Conread position: 227-558
Cow position: chr15:41358185-41357840 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 233
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 94, 47

Conread position: 229-615
Cow position: chr15:38981757-38981331 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 292
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 19, 188

Conread position: 233-430
Cow position: chr15:7892316-7892523 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 157
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 5, 130

Conread position: 242-452
Cow position: chr15:42530923-42530697 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 37, 118

Conread position: 242-557
Cow position: chr15:13677525-13677208 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 229
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 69, 61

Conread position: 242-560
Cow position: chr15:7838276-7837931 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 275

Conread position: 242-612
Cow position: chr15:8409882-8409485 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 273
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 41, 283

Conread position: 242-615
Cow position: chr15:4923153-4922755 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 52

Conread position: 242-615
Cow position: chr15:19737048-19737443 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 156

Conread position: 242-615
Cow position: chr15:22378914-22378510 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 281
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 37, 213

Conread position: 242-615
Cow position: chr15:31359884-31359483 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 208

Conread position: 243-615
Cow position: chr15:4672449-4672040 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 287
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 36, 23

Conread position: 243-615
Cow position: chr15:5981356-5980954 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 249-449
Cow position: chr15:10478672-10478885 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 34, 183

Conread position: 258-615
Cow position: chr15:4916184-4915802 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 274
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 20, 146

Conread position: 277-615
Cow position: chr15:6386369-6386737 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 255
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 39, 0

Conread position: 292-521
Cow position: chr15:20355655-20355894 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 13, 40

Conread position: 306-499
Cow position: chr15:25206205-25206003 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 133, 0

Conread position: 306-612
Cow position: chr15:1042272-1042595 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 229
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 8, 17

Conread position: 307-612
Cow position: chr15:7545775-7545474 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 212
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 7, 19

Conread position: 307-615
Cow position: chr15:16595761-16595436 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 223
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 7, 28

Conread position: 307-615
Cow position: chr15:17293978-17293668 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 224
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 7, 16

Conread position: 313-612
Cow position: chr15:11597091-11597399 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 222
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 121, 9

Conread position: 317-553
Cow position: chr15:314916-315156 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 185
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 116, 8

Conread position: 319-550
Cow position: chr15:2017482-2017248 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 39, 157

Conread position: 322-557
Cow position: chr15:32515237-32515478 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 111, 0

Conread position: 322-566
Cow position: chr15:5010720-5010972 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 104, 0

Conread position: 322-614
Cow position: chr15:36392238-36392532 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 216
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 91, 113

Conread position: 322-615
Cow position: chr15:2213980-2214288 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 117, 173

Conread position: 322-615
Cow position: chr15:4141902-4142212 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 211
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 132, 0

Conread position: 324-615
Cow position: chr15:32719831-32720139 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 215
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 111, 36

Conread position: 330-615
Cow position: chr15:8811116-8811419 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 0

Conread position: 333-615
Cow position: chr15:523965-524253 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 204
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 223, 99

Conread position: 333-615
Cow position: chr15:51218503-51218210 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 207
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 100, 149

Conread position: 336-604
Cow position: chr15:31783901-31784173 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 121, 5

Conread position: 336-613
Cow position: chr15:13675401-13675110 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 196
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 139

Conread position: 337-612
Cow position: chr15:1238568-1238287 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 197
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 117, 168

Conread position: 342-615
Cow position: chr15:40107923-40107648 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 197
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 93, 63

Conread position: 355-612
Cow position: chr15:17684463-17684735 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 190
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 14, 5

Conread position: 358-615
Cow position: chr15:12420546-12420821 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 75, 0

Conread position: 389-558
Cow position: chr15:13391216-13391392 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 7, 123

Conread position: 437-615
Cow position: chr15:44070718-44070534 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 114, 7

Show alignments to all cow chromosomes.