Cow genome map

Conread name: Lym2-sn67_H09.f

Conread position: 214-552
Cow position: chr16:11284288-11283925 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 250
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 65, 28

Conread position: 216-615
Cow position: chr16:25086313-25085879 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 329

Conread position: 217-419
Cow position: chr16:28470376-28470599 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 24, 0

Conread position: 217-465
Cow position: chr16:54324642-54324904 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 23, 196

Conread position: 217-468
Cow position: chr16:25258516-25258248 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 189
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 34, 0

Conread position: 217-479
Cow position: chr16:25001600-25001892 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 24, 81

Conread position: 217-483
Cow position: chr16:27732688-27732966 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 204
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 24, 248

Conread position: 217-519
Cow position: chr16:47474949-47474616 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 236
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 27, 71

Conread position: 217-539
Cow position: chr16:51084849-51084497 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 240
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 24, 288

Conread position: 217-557
Cow position: chr16:29047719-29047351 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 211

Conread position: 217-558
Cow position: chr16:34530994-34530653 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 258
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 62, 30

Conread position: 217-560
Cow position: chr16:4478277-4478645 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 217-560
Cow position: chr16:49255533-49255898 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 204

Conread position: 217-565
Cow position: chr16:28196547-28196921 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 262
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 29, 306

Conread position: 217-571
Cow position: chr16:23809017-23808655 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 97

Conread position: 217-598
Cow position: chr16:27714125-27714521 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 270
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 41, 30

Conread position: 217-607
Cow position: chr16:3330633-3330207 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 217-611
Cow position: chr16:25342636-25342236 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 14

Conread position: 217-614
Cow position: chr16:23535196-23535627 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 217-614
Cow position: chr16:23671364-23670961 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 274
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 10, 31

Conread position: 217-614
Cow position: chr16:31591220-31591655 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 341

Conread position: 217-615
Cow position: chr16:406343-406776 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 285

Conread position: 217-615
Cow position: chr16:838012-837576 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 159

Conread position: 217-615
Cow position: chr16:1432883-1432448 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 106

Conread position: 217-615
Cow position: chr16:2482439-2482876 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 361

Conread position: 217-615
Cow position: chr16:5485423-5484994 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 138

Conread position: 217-615
Cow position: chr16:6715903-6716326 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 282
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 113

Conread position: 217-615
Cow position: chr16:8815407-8815843 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 217-615
Cow position: chr16:15185772-15185335 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 217-615
Cow position: chr16:15477537-15477104 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 285

Conread position: 217-615
Cow position: chr16:18497623-18498025 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 62

Conread position: 217-615
Cow position: chr16:21186313-21185877 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 300
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 27, 0

Conread position: 217-615
Cow position: chr16:25442325-25441891 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 212

Conread position: 217-615
Cow position: chr16:25456783-25457199 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 209

Conread position: 217-615
Cow position: chr16:26664450-26664013 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 213

Conread position: 217-615
Cow position: chr16:26978817-26978401 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 283
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 46, 188

Conread position: 217-615
Cow position: chr16:27594201-27593769 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 292
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 27, 0

Conread position: 217-615
Cow position: chr16:28169656-28170101 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 313
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 27, 201

Conread position: 217-615
Cow position: chr16:40295496-40295914 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 13

Conread position: 217-615
Cow position: chr16:49233939-49234368 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 224

Conread position: 220-440
Cow position: chr16:37455318-37455546 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 59, 21

Conread position: 220-537
Cow position: chr16:19638749-19638409 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 244
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 11, 159

Conread position: 220-553
Cow position: chr16:20202664-20202332 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 241
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 29, 12

Conread position: 220-555
Cow position: chr16:16898143-16897789 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 200

Conread position: 220-613
Cow position: chr16:10374905-10375335 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 297
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 17, 153

Conread position: 220-615
Cow position: chr16:1566762-1567190 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 27

Conread position: 220-615
Cow position: chr16:7675779-7676194 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 88

Conread position: 220-615
Cow position: chr16:23983970-23983560 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 45

Conread position: 221-506
Cow position: chr16:2726558-2726850 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 209
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 58, 26

Conread position: 221-612
Cow position: chr16:9209647-9209243 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 269
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 86

Conread position: 221-615
Cow position: chr16:43896606-43897013 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 24

Conread position: 222-615
Cow position: chr16:56120355-56119934 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 289
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 28, 64

Conread position: 225-554
Cow position: chr16:5890676-5890343 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 239
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 58, 16

Conread position: 225-560
Cow position: chr16:41162399-41162735 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 201
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 94, 16

Conread position: 226-555
Cow position: chr16:41762505-41762172 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 226
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 65

Conread position: 226-615
Cow position: chr16:25189337-25188911 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 296
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 18, 275

Conread position: 227-614
Cow position: chr16:12668101-12668503 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 267
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 13, 141

Conread position: 242-530
Cow position: chr16:29984741-29984445 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 212
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 80, 261

Conread position: 242-615
Cow position: chr16:12537288-12537664 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 251
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 37, 88

Conread position: 242-615
Cow position: chr16:14665144-14665547 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 309

Conread position: 242-615
Cow position: chr16:15567925-15567517 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 243-614
Cow position: chr16:56916404-56916801 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 59

Conread position: 243-615
Cow position: chr16:3088537-3088939 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 285
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 39, 308

Conread position: 243-615
Cow position: chr16:5662503-5662105 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 275
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 36, 328

Conread position: 244-553
Cow position: chr16:41165986-41166313 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 72

Conread position: 244-615
Cow position: chr16:25739301-25738937 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 254
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 59, 30

Conread position: 249-553
Cow position: chr16:17056317-17056638 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 225
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 71, 155

Conread position: 249-615
Cow position: chr16:25172004-25171612 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 270
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 34, 45

Conread position: 253-537
Cow position: chr16:42735745-42736045 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 146

Conread position: 255-543
Cow position: chr16:29034702-29034406 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 217
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 27, 71

Conread position: 273-612
Cow position: chr16:11110419-11110774 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 248
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 44, 242

Conread position: 301-615
Cow position: chr16:15494095-15493766 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 10

Conread position: 305-612
Cow position: chr16:337755-337433 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 233
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 40, 20

Conread position: 313-615
Cow position: chr16:2410388-2410703 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 9

Conread position: 313-615
Cow position: chr16:23251857-23252172 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 7

Conread position: 315-615
Cow position: chr16:10438831-10438515 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 202

Conread position: 319-615
Cow position: chr16:26105486-26105800 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 237
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 33, 23

Conread position: 322-615
Cow position: chr16:37480568-37480876 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 225
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 112, 223

Conread position: 331-615
Cow position: chr16:1860776-1860485 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 19, 45

Conread position: 334-615
Cow position: chr16:41754899-41755195 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 207
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 101, 251

Conread position: 364-615
Cow position: chr16:7464359-7464090 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 201
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 68, 0

Conread position: 364-615
Cow position: chr16:19151086-19151359 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 201
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 71, 161

Conread position: 395-557
Cow position: chr16:10967839-10968004 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 124

Conread position: 461-615
Cow position: chr16:37455595-37455757 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 94, 0

Show alignments to all cow chromosomes.