Cow genome map
| Conread name: | Lym2-sn67_H09.f |
| Conread position: | 217-440 |
| Cow position: | chr17:21769738-21769983 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-469 |
| Cow position: | chr17:14296003-14296272 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 23, 239 |
| Conread position: | 217-514 |
| Cow position: | chr17:182844-182518 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 24, 153 |
| Conread position: | 217-527 |
| Cow position: | chr17:42266672-42266354 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 24, 15 |
| Conread position: | 217-552 |
| Cow position: | chr17:20389817-20390182 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-555 |
| Cow position: | chr17:7941814-7942158 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 94 |
| Conread position: | 217-571 |
| Cow position: | chr17:14215758-14216142 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 273 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 27, 202 |
| Conread position: | 217-612 |
| Cow position: | chr17:3655024-3655457 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 293 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-612 |
| Cow position: | chr17:31766768-31767203 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 298 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-613 |
| Cow position: | chr17:150621-151061 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 307 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 48, 62 |
| Conread position: | 217-613 |
| Cow position: | chr17:20080612-20081033 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 342 |
| Conread position: | 217-615 |
| Cow position: | chr17:1656585-1657015 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 298 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 30, 207 |
| Conread position: | 217-615 |
| Cow position: | chr17:1786693-1787102 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 293 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 24, 82 |
| Conread position: | 217-615 |
| Cow position: | chr17:2031385-2030963 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 371 |
| Conread position: | 217-615 |
| Cow position: | chr17:4083286-4082859 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 25 |
| Conread position: | 217-615 |
| Cow position: | chr17:6069818-6069389 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 148 |
| Conread position: | 217-615 |
| Cow position: | chr17:6611218-6611654 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 302 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-615 |
| Cow position: | chr17:9080152-9080592 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 305 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-615 |
| Cow position: | chr17:15437052-15436627 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 155 |
| Conread position: | 217-615 |
| Cow position: | chr17:18195056-18194646 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 277 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 217-615 |
| Cow position: | chr17:19020844-19020407 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 296 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-615 |
| Cow position: | chr17:19267559-19267994 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 217-615 |
| Cow position: | chr17:20099204-20099642 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 70 |
| Conread position: | 217-615 |
| Cow position: | chr17:23323183-23323618 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 245 |
| Conread position: | 217-615 |
| Cow position: | chr17:24783430-24782995 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 154 |
| Conread position: | 217-615 |
| Cow position: | chr17:40806077-40805644 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 218-428 |
| Cow position: | chr17:23038840-23038618 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 60, 203 |
| Conread position: | 218-615 |
| Cow position: | chr17:22559224-22558807 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 220-490 |
| Cow position: | chr17:33284580-33284867 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 100, 26 |
| Conread position: | 220-555 |
| Cow position: | chr17:4941465-4941815 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 252 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 27, 55 |
| Conread position: | 220-560 |
| Cow position: | chr17:15142089-15142449 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 24, 243 |
| Conread position: | 220-611 |
| Cow position: | chr17:20086500-20086916 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 294 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 33, 179 |
| Conread position: | 220-615 |
| Cow position: | chr17:2580869-2580453 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 80 |
| Conread position: | 220-615 |
| Cow position: | chr17:11086458-11086887 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 265 |
| Conread position: | 220-615 |
| Cow position: | chr17:14039779-14040205 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 296 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 220-615 |
| Cow position: | chr17:15325079-15324664 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 108 |
| Conread position: | 221-440 |
| Cow position: | chr17:4675370-4675142 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 20, 64 |
| Conread position: | 221-508 |
| Cow position: | chr17:17067498-17067195 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 102, 190 |
| Conread position: | 221-614 |
| Cow position: | chr17:15372488-15372061 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 19, 172 |
| Conread position: | 221-615 |
| Cow position: | chr17:4061369-4060931 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 223-561 |
| Cow position: | chr17:2149697-2149329 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 224-612 |
| Cow position: | chr17:8203209-8202803 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 281 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 225-453 |
| Cow position: | chr17:11784111-11783866 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 225-615 |
| Cow position: | chr17:3707528-3707946 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 58, 43 |
| Conread position: | 226-615 |
| Cow position: | chr17:16856258-16856683 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 230-557 |
| Cow position: | chr17:37139-36793 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 37, 124 |
| Conread position: | 233-615 |
| Cow position: | chr17:239558-239182 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 87 |
| Conread position: | 233-615 |
| Cow position: | chr17:14240747-14240333 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 233-615 |
| Cow position: | chr17:16121317-16121707 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 14 |
| Conread position: | 237-440 |
| Cow position: | chr17:12669190-12669398 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 189 |
| Conread position: | 242-613 |
| Cow position: | chr17:6261100-6260694 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 242-615 |
| Cow position: | chr17:24028760-24029169 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 243-492 |
| Cow position: | chr17:27793539-27793801 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 215 |
| Conread position: | 243-537 |
| Cow position: | chr17:5227861-5227551 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 243-612 |
| Cow position: | chr17:6120947-6120550 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 162 |
| Conread position: | 243-615 |
| Cow position: | chr17:43989742-43989334 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 282 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 244-555 |
| Cow position: | chr17:54208-54544 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 247 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 39, 58 |
| Conread position: | 247-555 |
| Cow position: | chr17:4783624-4783950 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 9, 309 |
| Conread position: | 247-615 |
| Cow position: | chr17:2175031-2174646 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 32, 218 |
| Conread position: | 261-561 |
| Cow position: | chr17:13694938-13695231 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 307-615 |
| Cow position: | chr17:22133357-22133036 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 313-615 |
| Cow position: | chr17:15851840-15851524 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 120, 9 |
| Conread position: | 322-615 |
| Cow position: | chr17:2263251-2262940 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 120, 199 |
| Conread position: | 322-615 |
| Cow position: | chr17:34157263-34156954 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 323-612 |
| Cow position: | chr17:1703553-1703855 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 130, 157 |
| Conread position: | 338-561 |
| Cow position: | chr17:14895300-14895071 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 348-615 |
| Cow position: | chr17:1881219-1880932 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 357-615 |
| Cow position: | chr17:31533318-31533055 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 77, 232 |
| Conread position: | 371-611 |
| Cow position: | chr17:20489038-20488781 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 474-615 |
| Cow position: | chr17:3641850-3642000 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
Show alignments to all cow chromosomes.