Cow genome map
| Conread name: | Lym2-sn67_H09.f |
| Conread position: | 217-498 |
| Cow position: | chr19:9706689-9706986 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 105, 30 |
| Conread position: | 217-525 |
| Cow position: | chr19:33653248-33653581 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 28, 175 |
| Conread position: | 217-527 |
| Cow position: | chr19:39667057-39667387 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 33, 280 |
| Conread position: | 217-558 |
| Cow position: | chr19:40816028-40816400 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 217-559 |
| Cow position: | chr19:52150201-52150574 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 264 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-560 |
| Cow position: | chr19:173739-173367 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 217-566 |
| Cow position: | chr19:35384135-35384508 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 23, 123 |
| Conread position: | 217-570 |
| Cow position: | chr19:342708-342340 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 28, 131 |
| Conread position: | 217-614 |
| Cow position: | chr19:892154-892575 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 115 |
| Conread position: | 217-615 |
| Cow position: | chr19:1587760-1588166 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 294 |
| Conread position: | 217-615 |
| Cow position: | chr19:5900028-5900454 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 375 |
| Conread position: | 217-615 |
| Cow position: | chr19:7343551-7343115 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-615 |
| Cow position: | chr19:12774585-12774163 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 131 |
| Conread position: | 217-615 |
| Cow position: | chr19:20106207-20105773 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 160 |
| Conread position: | 217-615 |
| Cow position: | chr19:28580191-28580613 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 115 |
| Conread position: | 217-615 |
| Cow position: | chr19:33874896-33874474 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 56 |
| Conread position: | 217-615 |
| Cow position: | chr19:39184060-39184490 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 275 |
| Conread position: | 217-615 |
| Cow position: | chr19:39391970-39391557 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 13 |
| Conread position: | 217-615 |
| Cow position: | chr19:50724033-50723600 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 134 |
| Conread position: | 220-614 |
| Cow position: | chr19:437982-438389 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 220-615 |
| Cow position: | chr19:7489815-7489393 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 108 |
| Conread position: | 221-538 |
| Cow position: | chr19:40886257-40886588 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 24, 118 |
| Conread position: | 221-557 |
| Cow position: | chr19:30756695-30756330 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 62 |
| Conread position: | 221-560 |
| Cow position: | chr19:256742-256373 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 221-615 |
| Cow position: | chr19:5730332-5729921 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 120 |
| Conread position: | 221-615 |
| Cow position: | chr19:6713272-6713661 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 65 |
| Conread position: | 221-615 |
| Cow position: | chr19:28405232-28405659 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 304 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 222-538 |
| Cow position: | chr19:1489526-1489866 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 65, 122 |
| Conread position: | 223-615 |
| Cow position: | chr19:4387080-4386669 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 18 |
| Conread position: | 230-555 |
| Cow position: | chr19:42583198-42583523 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 17, 55 |
| Conread position: | 232-615 |
| Cow position: | chr19:5027634-5028021 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 242-578 |
| Cow position: | chr19:25924780-25924420 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 36, 75 |
| Conread position: | 242-615 |
| Cow position: | chr19:40851007-40851402 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 243-612 |
| Cow position: | chr19:39750-39349 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 282 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 36, 115 |
| Conread position: | 243-615 |
| Cow position: | chr19:774053-773646 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 249-615 |
| Cow position: | chr19:48860766-48861156 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 33, 254 |
| Conread position: | 257-614 |
| Cow position: | chr19:11521744-11522117 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 26, 86 |
| Conread position: | 289-512 |
| Cow position: | chr19:3174203-3173972 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 146, 24 |
| Conread position: | 305-615 |
| Cow position: | chr19:135416-135743 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 9, 16 |
| Conread position: | 306-560 |
| Cow position: | chr19:32194399-32194137 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 306-615 |
| Cow position: | chr19:43145086-43144762 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 307-469 |
| Cow position: | chr19:21339350-21339511 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 311-565 |
| Cow position: | chr19:39096515-39096251 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 115 |
| Conread position: | 314-561 |
| Cow position: | chr19:32181712-32181969 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 128, 10 |
| Conread position: | 316-612 |
| Cow position: | chr19:3139293-3138981 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 7, 78 |
| Conread position: | 321-568 |
| Cow position: | chr19:24294468-24294212 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 322-560 |
| Cow position: | chr19:167201-167447 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 119, 235 |
| Conread position: | 325-615 |
| Cow position: | chr19:32210721-32211016 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 236, 131 |
| Conread position: | 332-491 |
| Cow position: | chr19:5249391-5249547 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 95, 111 |
| Conread position: | 349-615 |
| Cow position: | chr19:1656756-1656478 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 15 |
| Conread position: | 356-615 |
| Cow position: | chr19:2273058-2273337 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 360-550 |
| Cow position: | chr19:74942-75140 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 79, 172 |
| Conread position: | 364-504 |
| Cow position: | chr19:27050847-27050985 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 88 |
| Conread position: | 396-557 |
| Cow position: | chr19:7070586-7070419 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 38, 122 |
| Conread position: | 458-615 |
| Cow position: | chr19:33942823-33942655 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 105, 0 |
Show alignments to all cow chromosomes.