Cow genome map
| Conread name: | Lym2-sn67_H09.f |
| Conread position: | 216-551 |
| Cow position: | chr21:3169938-3169590 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 28, 73 |
| Conread position: | 217-480 |
| Cow position: | chr21:5018694-5018419 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 159 |
| Conread position: | 217-484 |
| Cow position: | chr21:361218-360941 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 23, 19 |
| Conread position: | 217-485 |
| Cow position: | chr21:10568258-10567961 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-509 |
| Cow position: | chr21:4185473-4185161 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 230 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 33, 71 |
| Conread position: | 217-525 |
| Cow position: | chr21:28613882-28613567 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 24, 113 |
| Conread position: | 217-552 |
| Cow position: | chr21:7064058-7063705 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 27, 246 |
| Conread position: | 217-559 |
| Cow position: | chr21:26849464-26849836 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-560 |
| Cow position: | chr21:31514760-31515133 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 217-561 |
| Cow position: | chr21:27285023-27284650 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 217-611 |
| Cow position: | chr21:12054463-12054882 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 289 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 27, 198 |
| Conread position: | 217-612 |
| Cow position: | chr21:37372789-37372362 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 322 |
| Conread position: | 217-612 |
| Cow position: | chr21:40682889-40683321 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 298 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 27, 199 |
| Conread position: | 217-614 |
| Cow position: | chr21:27069406-27069845 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 217-615 |
| Cow position: | chr21:147478-147051 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 217-615 |
| Cow position: | chr21:2417767-2417338 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 188 |
| Conread position: | 217-615 |
| Cow position: | chr21:3780328-3779889 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 354 |
| Conread position: | 217-615 |
| Cow position: | chr21:10851631-10851201 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 118 |
| Conread position: | 217-615 |
| Cow position: | chr21:27035843-27036279 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 303 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-615 |
| Cow position: | chr21:28985654-28985239 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 33, 238 |
| Conread position: | 217-615 |
| Cow position: | chr21:30597924-30598353 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 307 |
| Conread position: | 217-615 |
| Cow position: | chr21:34822656-34823092 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-615 |
| Cow position: | chr21:42914919-42914487 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 292 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 23, 349 |
| Conread position: | 217-615 |
| Cow position: | chr21:45783030-45782603 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 296 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 62, 25 |
| Conread position: | 217-615 |
| Cow position: | chr21:45785887-45786310 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 89, 56 |
| Conread position: | 217-615 |
| Cow position: | chr21:47646889-47646463 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 375 |
| Conread position: | 217-615 |
| Cow position: | chr21:47942503-47942069 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 220-565 |
| Cow position: | chr21:1286662-1287021 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 338 |
| Conread position: | 220-612 |
| Cow position: | chr21:218567-218168 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 220-615 |
| Cow position: | chr21:20743072-20743459 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 27, 77 |
| Conread position: | 220-615 |
| Cow position: | chr21:33253713-33253302 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 59 |
| Conread position: | 221-541 |
| Cow position: | chr21:49296426-49296104 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 91, 26 |
| Conread position: | 221-560 |
| Cow position: | chr21:35774482-35774128 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 5, 154 |
| Conread position: | 221-565 |
| Cow position: | chr21:27567296-27566928 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 44, 53 |
| Conread position: | 221-612 |
| Cow position: | chr21:28256957-28256558 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 221-615 |
| Cow position: | chr21:2712468-2712086 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 272 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 37, 63 |
| Conread position: | 225-553 |
| Cow position: | chr21:21520141-21519802 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 28, 51 |
| Conread position: | 230-553 |
| Cow position: | chr21:9893424-9893088 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 9, 85 |
| Conread position: | 230-561 |
| Cow position: | chr21:28736705-28736362 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 230-615 |
| Cow position: | chr21:468384-467990 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 331 |
| Conread position: | 234-615 |
| Cow position: | chr21:11452018-11452424 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 281 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 45, 7 |
| Conread position: | 242-559 |
| Cow position: | chr21:37149544-37149223 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 242-613 |
| Cow position: | chr21:40270146-40270551 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 119 |
| Conread position: | 242-615 |
| Cow position: | chr21:5839736-5840142 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 242-615 |
| Cow position: | chr21:35145278-35144879 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 243-555 |
| Cow position: | chr21:11507138-11506799 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 243-560 |
| Cow position: | chr21:26635633-26635958 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 63, 206 |
| Conread position: | 243-612 |
| Cow position: | chr21:2512373-2511967 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 290 |
| Conread position: | 244-615 |
| Cow position: | chr21:30588-30199 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 269 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 247-535 |
| Cow position: | chr21:4588461-4588772 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 32, 69 |
| Conread position: | 248-615 |
| Cow position: | chr21:36979398-36979791 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 251-615 |
| Cow position: | chr21:21916207-21915803 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 32, 264 |
| Conread position: | 290-485 |
| Cow position: | chr21:37718449-37718644 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 306-465 |
| Cow position: | chr21:29625274-29625431 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 313-615 |
| Cow position: | chr21:1193193-1192879 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 9 |
| Conread position: | 313-615 |
| Cow position: | chr21:2882306-2882616 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 48 |
| Conread position: | 313-615 |
| Cow position: | chr21:26402050-26402366 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 236 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 104, 9 |
| Conread position: | 318-615 |
| Cow position: | chr21:26836330-26836012 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 39 |
| Conread position: | 322-612 |
| Cow position: | chr21:39426491-39426184 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 108, 208 |
| Conread position: | 325-615 |
| Cow position: | chr21:2539675-2539960 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 226, 95 |
| Conread position: | 325-615 |
| Cow position: | chr21:18817121-18817430 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 117, 74 |
| Conread position: | 331-543 |
| Cow position: | chr21:4078197-4077985 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 119 |
| Conread position: | 383-578 |
| Cow position: | chr21:30562847-30562650 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 444-615 |
| Cow position: | chr21:10567967-10567792 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 9 |
Show alignments to all cow chromosomes.