Cow genome map

Conread name: Lym2-sn67_H09.f

Conread position: 210-612
Cow position: chr22:6875927-6876332 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 254
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 84, 65

Conread position: 216-615
Cow position: chr22:559346-559761 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 16

Conread position: 217-433
Cow position: chr22:44368099-44368324 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 163
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 24, 119

Conread position: 217-450
Cow position: chr22:46585181-46585434 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 33, 0

Conread position: 217-457
Cow position: chr22:24951940-24951681 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 188
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 27, 246

Conread position: 217-497
Cow position: chr22:33352055-33351755 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 212
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 20, 175

Conread position: 217-503
Cow position: chr22:7304271-7304574 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 211
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 27, 169

Conread position: 217-535
Cow position: chr22:40379095-40378761 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 233
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 77, 30

Conread position: 217-540
Cow position: chr22:21035007-21035356 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 285

Conread position: 217-552
Cow position: chr22:19536936-19536574 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 249
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 27, 212

Conread position: 217-553
Cow position: chr22:1268370-1268741 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 269
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 33, 361

Conread position: 217-556
Cow position: chr22:44492438-44492069 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 258
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 27, 0

Conread position: 217-557
Cow position: chr22:18814982-18815350 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 217-557
Cow position: chr22:45582298-45581941 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 253
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 23, 194

Conread position: 217-560
Cow position: chr22:21195114-21195480 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 255
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 27, 81

Conread position: 217-560
Cow position: chr22:35906008-35906369 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 308

Conread position: 217-561
Cow position: chr22:8120705-8121069 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 23

Conread position: 217-568
Cow position: chr22:13773903-13773539 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 259
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 24, 49

Conread position: 217-612
Cow position: chr22:538494-538053 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 305
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 27, 310

Conread position: 217-612
Cow position: chr22:3276974-3277407 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 299
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 27, 0

Conread position: 217-612
Cow position: chr22:6022047-6021615 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 298
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 27, 0

Conread position: 217-615
Cow position: chr22:290314-290753 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 289
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 33, 0

Conread position: 217-615
Cow position: chr22:694999-694572 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 217-615
Cow position: chr22:1281351-1281782 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 68

Conread position: 217-615
Cow position: chr22:3803563-3803137 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 44

Conread position: 217-615
Cow position: chr22:6333096-6332659 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 217-615
Cow position: chr22:6601862-6602259 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 8

Conread position: 217-615
Cow position: chr22:10908453-10908887 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 217-615
Cow position: chr22:11803668-11804105 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 304
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 27, 200

Conread position: 217-615
Cow position: chr22:12730313-12730734 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 217-615
Cow position: chr22:16202296-16201877 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 282
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 27, 131

Conread position: 217-615
Cow position: chr22:17327075-17327506 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 217-615
Cow position: chr22:20239456-20239892 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 297
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 27, 0

Conread position: 217-615
Cow position: chr22:27308395-27308826 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 217-615
Cow position: chr22:31333661-31334086 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 357

Conread position: 217-615
Cow position: chr22:34169723-34169288 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 217-615
Cow position: chr22:36185140-36184708 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 298

Conread position: 217-615
Cow position: chr22:36860165-36860586 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 24

Conread position: 217-615
Cow position: chr22:37292291-37292716 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 188

Conread position: 217-615
Cow position: chr22:42992559-42992125 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 217-615
Cow position: chr22:44397814-44397395 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 232

Conread position: 217-615
Cow position: chr22:46580335-46580772 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 301
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 29, 0

Conread position: 220-615
Cow position: chr22:1519640-1520074 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 62

Conread position: 220-615
Cow position: chr22:6501761-6502196 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 155

Conread position: 220-615
Cow position: chr22:19142321-19142740 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 113

Conread position: 220-615
Cow position: chr22:39468155-39468571 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 87

Conread position: 220-615
Cow position: chr22:44935327-44934919 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 19

Conread position: 221-468
Cow position: chr22:38550763-38550506 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 183
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 30, 67

Conread position: 221-609
Cow position: chr22:95985-96388 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 264
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 16, 263

Conread position: 221-610
Cow position: chr22:325810-326212 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 230

Conread position: 221-614
Cow position: chr22:522014-522444 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 295
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 20, 0

Conread position: 221-615
Cow position: chr22:40370815-40370400 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 278
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 32, 147

Conread position: 223-615
Cow position: chr22:8736972-8737380 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 282
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 92, 50

Conread position: 225-615
Cow position: chr22:203072-202668 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 261
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 26, 13

Conread position: 225-615
Cow position: chr22:1323577-1323158 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 412

Conread position: 227-431
Cow position: chr22:44348485-44348705 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 13, 147

Conread position: 242-588
Cow position: chr22:1880158-1879784 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 265
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 37, 139

Conread position: 243-608
Cow position: chr22:30677361-30677727 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 267
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 145, 26

Conread position: 243-615
Cow position: chr22:18028641-18028231 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 296
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 36, 172

Conread position: 245-612
Cow position: chr22:37268518-37268113 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 272
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 257-557
Cow position: chr22:283746-284056 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 219
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 22, 49

Conread position: 258-559
Cow position: chr22:15054043-15053732 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 216
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 64, 16

Conread position: 305-615
Cow position: chr22:21590611-21590287 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 18

Conread position: 306-615
Cow position: chr22:19320289-19319963 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 226
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 8, 17

Conread position: 316-610
Cow position: chr22:44477890-44477581 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 83

Conread position: 325-615
Cow position: chr22:9045384-9045082 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 201
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 109, 80

Conread position: 331-557
Cow position: chr22:37141150-37140913 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 186
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 26, 60

Conread position: 344-615
Cow position: chr22:37133891-37133601 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 222
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 95, 130

Conread position: 347-615
Cow position: chr22:11032983-11032696 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 85, 0

Conread position: 373-615
Cow position: chr22:41418115-41418365 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 62, 178

Conread position: 377-615
Cow position: chr22:15312746-15313002 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 188
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 62, 0

Conread position: 390-615
Cow position: chr22:46613054-46612824 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 160
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 178

Conread position: 474-615
Cow position: chr22:31314444-31314296 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 81, 0

Show alignments to all cow chromosomes.