Cow genome map
| Conread name: | Lym2-sn67_H09.f |
| Conread position: | 215-555 |
| Cow position: | chr24:14870863-14871212 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 7, 35 |
| Conread position: | 216-614 |
| Cow position: | chr24:17370526-17370929 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 25 |
| Conread position: | 217-481 |
| Cow position: | chr24:37199433-37199709 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 30, 218 |
| Conread position: | 217-488 |
| Cow position: | chr24:17300446-17300722 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 33, 42 |
| Conread position: | 217-539 |
| Cow position: | chr24:14389069-14389403 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 217-552 |
| Cow position: | chr24:7063011-7062647 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 27, 202 |
| Conread position: | 217-557 |
| Cow position: | chr24:5887785-5888141 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 71 |
| Conread position: | 217-559 |
| Cow position: | chr24:17409930-17409579 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 46, 144 |
| Conread position: | 217-560 |
| Cow position: | chr24:19702963-19702597 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 74 |
| Conread position: | 217-561 |
| Cow position: | chr24:14383167-14383541 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 288 |
| Conread position: | 217-600 |
| Cow position: | chr24:12238753-12238344 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 49, 83 |
| Conread position: | 217-610 |
| Cow position: | chr24:35869101-35869515 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 268 |
| Conread position: | 217-612 |
| Cow position: | chr24:6659030-6659460 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 303 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 33, 172 |
| Conread position: | 217-612 |
| Cow position: | chr24:12109261-12109667 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 222, 52 |
| Conread position: | 217-615 |
| Cow position: | chr24:147143-147574 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 102 |
| Conread position: | 217-615 |
| Cow position: | chr24:5991757-5992192 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-615 |
| Cow position: | chr24:6337859-6337434 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 355 |
| Conread position: | 217-615 |
| Cow position: | chr24:6353602-6353192 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 113 |
| Conread position: | 217-615 |
| Cow position: | chr24:6407504-6407065 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 217-615 |
| Cow position: | chr24:6435952-6435517 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 27, 284 |
| Conread position: | 217-615 |
| Cow position: | chr24:9187273-9187697 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 292 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 27, 255 |
| Conread position: | 217-615 |
| Cow position: | chr24:9545524-9545097 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 217 |
| Conread position: | 217-615 |
| Cow position: | chr24:12204871-12205272 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 33, 186 |
| Conread position: | 217-615 |
| Cow position: | chr24:12699355-12699772 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 27, 195 |
| Conread position: | 217-615 |
| Cow position: | chr24:13189648-13189216 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-615 |
| Cow position: | chr24:13233727-13233287 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-615 |
| Cow position: | chr24:19834843-19834430 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 22 |
| Conread position: | 217-615 |
| Cow position: | chr24:22972531-22972126 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 56 |
| Conread position: | 217-615 |
| Cow position: | chr24:23504391-23504829 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-615 |
| Cow position: | chr24:29188763-29188326 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-615 |
| Cow position: | chr24:38638995-38638574 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 316 |
| Conread position: | 217-615 |
| Cow position: | chr24:44018977-44018553 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 292 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 27, 246 |
| Conread position: | 221-452 |
| Cow position: | chr24:38585653-38585906 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 221-467 |
| Cow position: | chr24:16560885-16561123 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 221-543 |
| Cow position: | chr24:6142540-6142202 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 221-554 |
| Cow position: | chr24:8150840-8151174 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 25, 98 |
| Conread position: | 221-615 |
| Cow position: | chr24:36558314-36558737 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 222-612 |
| Cow position: | chr24:6064317-6064710 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 73, 22 |
| Conread position: | 224-615 |
| Cow position: | chr24:12334315-12334723 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 225-520 |
| Cow position: | chr24:19641139-19640819 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 188 |
| Conread position: | 225-560 |
| Cow position: | chr24:1450870-1450532 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 45 |
| Conread position: | 225-615 |
| Cow position: | chr24:6130276-6129864 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 226-430 |
| Cow position: | chr24:40101441-40101658 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 15, 208 |
| Conread position: | 226-615 |
| Cow position: | chr24:4414073-4414497 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 226-615 |
| Cow position: | chr24:9090594-9091029 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 306 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 15, 62 |
| Conread position: | 242-615 |
| Cow position: | chr24:29304873-29305281 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 243-506 |
| Cow position: | chr24:11151798-11152087 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 243-538 |
| Cow position: | chr24:12163382-12163060 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 244-615 |
| Cow position: | chr24:12087646-12087238 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 71 |
| Conread position: | 247-615 |
| Cow position: | chr24:37320168-37320550 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 15, 60 |
| Conread position: | 249-615 |
| Cow position: | chr24:7089539-7089933 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 280 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 282 |
| Conread position: | 274-615 |
| Cow position: | chr24:6023715-6024072 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 13 |
| Conread position: | 277-560 |
| Cow position: | chr24:14755081-14754784 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 277-565 |
| Cow position: | chr24:17322110-17321803 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 93 |
| Conread position: | 277-615 |
| Cow position: | chr24:6085456-6085096 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 250 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 284-615 |
| Cow position: | chr24:13044262-13044596 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 306-552 |
| Cow position: | chr24:30430974-30430719 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 307-558 |
| Cow position: | chr24:16083668-16083928 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 307-612 |
| Cow position: | chr24:14881252-14881570 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 8, 19 |
| Conread position: | 307-614 |
| Cow position: | chr24:6668462-6668770 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 219 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 8, 16 |
| Conread position: | 313-615 |
| Cow position: | chr24:17695628-17695947 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 7 |
| Conread position: | 334-615 |
| Cow position: | chr24:12149981-12150277 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 101, 31 |
| Conread position: | 348-615 |
| Cow position: | chr24:6332379-6332659 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 105, 60 |
| Conread position: | 356-613 |
| Cow position: | chr24:12128753-12129030 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 77, 127 |
| Conread position: | 356-615 |
| Cow position: | chr24:6327719-6327996 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 28, 43 |
| Conread position: | 357-615 |
| Cow position: | chr24:40656353-40656090 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 77, 130 |
| Conread position: | 385-615 |
| Cow position: | chr24:6060178-6059932 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 7 |
Show alignments to all cow chromosomes.