Cow genome map
| Conread name: | Lym2-sn67_H09.f |
| Conread position: | 214-615 |
| Cow position: | chr28:1954786-1954350 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 300 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 65, 28 |
| Conread position: | 216-615 |
| Cow position: | chr28:22041856-22042279 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 199 |
| Conread position: | 217-403 |
| Cow position: | chr28:15684881-15684683 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-500 |
| Cow position: | chr28:17389830-17389520 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-528 |
| Cow position: | chr28:25760922-25760594 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 62, 40 |
| Conread position: | 217-551 |
| Cow position: | chr28:25168692-25169041 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 30, 144 |
| Conread position: | 217-553 |
| Cow position: | chr28:21566886-21566517 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 30, 156 |
| Conread position: | 217-554 |
| Cow position: | chr28:5799719-5799363 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 318 |
| Conread position: | 217-554 |
| Cow position: | chr28:15587504-15587157 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 89, 25 |
| Conread position: | 217-555 |
| Cow position: | chr28:33253737-33253388 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 235 |
| Conread position: | 217-556 |
| Cow position: | chr28:2085893-2085522 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-560 |
| Cow position: | chr28:21360920-21360556 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 86 |
| Conread position: | 217-585 |
| Cow position: | chr28:6778510-6778907 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 276 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 217-612 |
| Cow position: | chr28:9180045-9179625 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 246 |
| Conread position: | 217-612 |
| Cow position: | chr28:24590285-24589853 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 297 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-615 |
| Cow position: | chr28:484165-484600 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-615 |
| Cow position: | chr28:1166461-1166882 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 167 |
| Conread position: | 217-615 |
| Cow position: | chr28:1385977-1386402 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 217-615 |
| Cow position: | chr28:1506295-1505863 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 217-615 |
| Cow position: | chr28:3190824-3191259 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 102 |
| Conread position: | 217-615 |
| Cow position: | chr28:5750271-5750711 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-615 |
| Cow position: | chr28:5766159-5765749 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 33, 97 |
| Conread position: | 217-615 |
| Cow position: | chr28:5938916-5938481 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-615 |
| Cow position: | chr28:7003426-7002992 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 216 |
| Conread position: | 217-615 |
| Cow position: | chr28:13461408-13460970 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-615 |
| Cow position: | chr28:14703957-14704391 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 217-615 |
| Cow position: | chr28:15034712-15035120 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 217-615 |
| Cow position: | chr28:17665879-17666310 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-615 |
| Cow position: | chr28:18146312-18146733 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 289 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 73, 25 |
| Conread position: | 217-615 |
| Cow position: | chr28:22259722-22260155 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 217-615 |
| Cow position: | chr28:24669030-24668608 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 38 |
| Conread position: | 217-615 |
| Cow position: | chr28:26424830-26425259 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 30 |
| Conread position: | 217-615 |
| Cow position: | chr28:29821427-29820992 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-615 |
| Cow position: | chr28:32790963-32791379 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 30 |
| Conread position: | 218-557 |
| Cow position: | chr28:14232505-14232869 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 35, 24 |
| Conread position: | 220-612 |
| Cow position: | chr28:10646005-10646416 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 283 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 220-614 |
| Cow position: | chr28:784067-783670 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 92 |
| Conread position: | 221-615 |
| Cow position: | chr28:7811836-7811446 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 107, 58 |
| Conread position: | 221-615 |
| Cow position: | chr28:8380461-8380058 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 76 |
| Conread position: | 222-615 |
| Cow position: | chr28:8719536-8719950 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 218 |
| Conread position: | 225-554 |
| Cow position: | chr28:15673725-15673393 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 28, 86 |
| Conread position: | 225-557 |
| Cow position: | chr28:10496114-10496467 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 297 |
| Conread position: | 225-609 |
| Cow position: | chr28:5803446-5803050 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 58, 110 |
| Conread position: | 237-428 |
| Cow position: | chr28:5112761-5112943 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 242-557 |
| Cow position: | chr28:7827389-7827049 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 37, 173 |
| Conread position: | 242-615 |
| Cow position: | chr28:18519048-18519453 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 244-612 |
| Cow position: | chr28:33246682-33247073 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 257 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 33, 258 |
| Conread position: | 247-615 |
| Cow position: | chr28:5567536-5567151 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 298 |
| Conread position: | 248-613 |
| Cow position: | chr28:7788507-7788895 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 282 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 34, 271 |
| Conread position: | 249-615 |
| Cow position: | chr28:12408857-12409238 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 75 |
| Conread position: | 252-521 |
| Cow position: | chr28:11489875-11490158 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 30, 106 |
| Conread position: | 261-615 |
| Cow position: | chr28:12151673-12151301 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 289-615 |
| Cow position: | chr28:1813527-1813867 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 144, 25 |
| Conread position: | 305-615 |
| Cow position: | chr28:5814681-5814373 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 61, 138 |
| Conread position: | 307-504 |
| Cow position: | chr28:698566-698372 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 307-614 |
| Cow position: | chr28:10460288-10460608 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 313-615 |
| Cow position: | chr28:10470819-10470504 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 233 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 120, 9 |
| Conread position: | 322-615 |
| Cow position: | chr28:7741748-7741444 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 181 |
| Conread position: | 322-615 |
| Cow position: | chr28:24883679-24883979 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 234, 120 |
| Conread position: | 327-615 |
| Cow position: | chr28:14751845-14751540 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 333-615 |
| Cow position: | chr28:6537969-6538268 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 58, 65 |
| Conread position: | 337-615 |
| Cow position: | chr28:10072564-10072271 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 116, 210 |
| Conread position: | 343-565 |
| Cow position: | chr28:29760641-29760872 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 198 |
| Conread position: | 344-615 |
| Cow position: | chr28:13373971-13374241 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 150, 100 |
| Conread position: | 353-615 |
| Cow position: | chr28:7026982-7027261 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 389-615 |
| Cow position: | chr28:10580849-10581094 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 395-615 |
| Cow position: | chr28:2987854-2988087 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 395-615 |
| Cow position: | chr28:15684464-15684235 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 72, 30 |
| Conread position: | 437-615 |
| Cow position: | chr28:1216970-1217160 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 7 |
| Conread position: | 459-615 |
| Cow position: | chr28:5113138-5113300 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 96, 15 |
Show alignments to all cow chromosomes.