Cow genome map
| Conread name: | Lym2-sn67_H09.f |
| Conread position: | 214-615 |
| Cow position: | chr29:13622468-13622884 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 65, 28 |
| Conread position: | 216-615 |
| Cow position: | chr29:2101232-2100811 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 24, 114 |
| Conread position: | 216-615 |
| Cow position: | chr29:14449272-14448864 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 289 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 47, 25 |
| Conread position: | 217-422 |
| Cow position: | chr29:6264608-6264829 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 217-447 |
| Cow position: | chr29:21425626-21425869 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 60, 238 |
| Conread position: | 217-482 |
| Cow position: | chr29:16345606-16345320 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 93 |
| Conread position: | 217-484 |
| Cow position: | chr29:42093157-42092872 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 246 |
| Conread position: | 217-488 |
| Cow position: | chr29:5236413-5236113 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 24, 174 |
| Conread position: | 217-524 |
| Cow position: | chr29:2839950-2840279 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 299 |
| Conread position: | 217-532 |
| Cow position: | chr29:3699345-3699011 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 160 |
| Conread position: | 217-552 |
| Cow position: | chr29:3328731-3328366 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 255 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-556 |
| Cow position: | chr29:14112919-14112574 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 66, 43 |
| Conread position: | 217-557 |
| Cow position: | chr29:8664905-8664554 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 14, 238 |
| Conread position: | 217-560 |
| Cow position: | chr29:2465461-2465831 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 23, 204 |
| Conread position: | 217-560 |
| Cow position: | chr29:15997258-15997629 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 33, 326 |
| Conread position: | 217-607 |
| Cow position: | chr29:252130-251715 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 287 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 23, 107 |
| Conread position: | 217-613 |
| Cow position: | chr29:2747057-2747468 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 25 |
| Conread position: | 217-615 |
| Cow position: | chr29:5981316-5981753 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 178 |
| Conread position: | 217-615 |
| Cow position: | chr29:9642395-9642800 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 294 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 24, 238 |
| Conread position: | 217-615 |
| Cow position: | chr29:16023956-16023531 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 131 |
| Conread position: | 217-615 |
| Cow position: | chr29:19655016-19654590 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 217-615 |
| Cow position: | chr29:20252552-20252126 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 115 |
| Conread position: | 217-615 |
| Cow position: | chr29:26163442-26163868 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-615 |
| Cow position: | chr29:31182800-31182366 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 292 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 27, 154 |
| Conread position: | 217-615 |
| Cow position: | chr29:32558359-32558786 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 287 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 27, 247 |
| Conread position: | 217-615 |
| Cow position: | chr29:32804804-32804399 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 16, 81 |
| Conread position: | 217-615 |
| Cow position: | chr29:34798419-34798848 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 84 |
| Conread position: | 217-615 |
| Cow position: | chr29:35814578-35815014 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 301 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-615 |
| Cow position: | chr29:38228370-38227939 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 217-615 |
| Cow position: | chr29:39078319-39078744 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 217-615 |
| Cow position: | chr29:45461139-45460684 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 217-615 |
| Cow position: | chr29:45586008-45586414 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 25 |
| Conread position: | 220-520 |
| Cow position: | chr29:30259149-30259459 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 55, 179 |
| Conread position: | 221-612 |
| Cow position: | chr29:2691551-2691146 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 221-615 |
| Cow position: | chr29:47060-47476 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 108 |
| Conread position: | 221-615 |
| Cow position: | chr29:647165-646757 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 283 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 221-615 |
| Cow position: | chr29:3176046-3176451 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 57, 20 |
| Conread position: | 221-615 |
| Cow position: | chr29:14084741-14085167 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 258 |
| Conread position: | 221-615 |
| Cow position: | chr29:14587307-14586882 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 221-615 |
| Cow position: | chr29:19621889-19622322 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 221-615 |
| Cow position: | chr29:25931138-25931579 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 85 |
| Conread position: | 222-615 |
| Cow position: | chr29:13583448-13583041 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 281 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 18, 63 |
| Conread position: | 222-615 |
| Cow position: | chr29:32541481-32541055 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 7 |
| Conread position: | 223-613 |
| Cow position: | chr29:6213907-6213488 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 284 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 225-557 |
| Cow position: | chr29:32892157-32891813 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 37 |
| Conread position: | 225-615 |
| Cow position: | chr29:10822593-10823022 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 180 |
| Conread position: | 226-585 |
| Cow position: | chr29:38207281-38207674 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 6 |
| Conread position: | 227-615 |
| Cow position: | chr29:7429830-7430257 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 231-615 |
| Cow position: | chr29:10646877-10647288 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 233-615 |
| Cow position: | chr29:23977501-23977082 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 237-615 |
| Cow position: | chr29:14210221-14210607 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 10 |
| Conread position: | 241-615 |
| Cow position: | chr29:9620763-9620379 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 75, 33 |
| Conread position: | 242-554 |
| Cow position: | chr29:13651397-13651088 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 63, 42 |
| Conread position: | 242-559 |
| Cow position: | chr29:42938828-42939172 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 242-615 |
| Cow position: | chr29:7845755-7845348 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 284 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 242-615 |
| Cow position: | chr29:18855582-18855989 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 283 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 244-615 |
| Cow position: | chr29:32287535-32287156 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 60, 237 |
| Conread position: | 246-615 |
| Cow position: | chr29:43323916-43323519 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 85 |
| Conread position: | 249-615 |
| Cow position: | chr29:34874160-34873779 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 106 |
| Conread position: | 305-588 |
| Cow position: | chr29:16111675-16111383 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 214 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 6, 19 |
| Conread position: | 306-615 |
| Cow position: | chr29:27979638-27979963 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 306-615 |
| Cow position: | chr29:31096095-31096421 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 306-615 |
| Cow position: | chr29:35298104-35297794 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 307-615 |
| Cow position: | chr29:45205785-45205464 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 313-561 |
| Cow position: | chr29:42803690-42803437 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 195 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 120, 9 |
| Conread position: | 320-615 |
| Cow position: | chr29:5958862-5958561 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 39 |
| Conread position: | 322-615 |
| Cow position: | chr29:668799-669097 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 232, 120 |
| Conread position: | 322-615 |
| Cow position: | chr29:27262630-27262935 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 226 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 113, 20 |
| Conread position: | 339-615 |
| Cow position: | chr29:37608864-37609154 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 95, 143 |
| Conread position: | 395-612 |
| Cow position: | chr29:37165330-37165101 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 401-615 |
| Cow position: | chr29:35263849-35263641 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 48, 84 |
| Conread position: | 457-615 |
| Cow position: | chr29:21425898-21426067 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 92, 85 |
Show alignments to all cow chromosomes.