Cow genome map
| Conread name: | Lym2-sn67_H09.f |
| Conread position: | 214-559 |
| Cow position: | chr4:22474460-22474098 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 68, 152 |
| Conread position: | 216-615 |
| Cow position: | chr4:6489265-6489680 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 108 |
| Conread position: | 216-615 |
| Cow position: | chr4:10882666-10882230 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 103 |
| Conread position: | 217-437 |
| Cow position: | chr4:41191487-41191727 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 217-484 |
| Cow position: | chr4:41960011-41959728 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 27, 229 |
| Conread position: | 217-519 |
| Cow position: | chr4:19005202-19005526 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 168 |
| Conread position: | 217-519 |
| Cow position: | chr4:42405723-42405390 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 23, 221 |
| Conread position: | 217-530 |
| Cow position: | chr4:4178363-4178043 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 38, 273 |
| Conread position: | 217-537 |
| Cow position: | chr4:68109916-68110266 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 217-540 |
| Cow position: | chr4:28832658-28832337 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 41, 33 |
| Conread position: | 217-553 |
| Cow position: | chr4:60263046-60263410 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 62 |
| Conread position: | 217-557 |
| Cow position: | chr4:99107-99469 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 122 |
| Conread position: | 217-560 |
| Cow position: | chr4:9847097-9847468 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 286 |
| Conread position: | 217-595 |
| Cow position: | chr4:26876666-26877079 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 217-599 |
| Cow position: | chr4:34178124-34178540 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 57 |
| Conread position: | 217-606 |
| Cow position: | chr4:69521636-69521248 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 23, 88 |
| Conread position: | 217-612 |
| Cow position: | chr4:38930501-38930090 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 24, 71 |
| Conread position: | 217-613 |
| Cow position: | chr4:36897491-36897058 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 224 |
| Conread position: | 217-614 |
| Cow position: | chr4:11110166-11110580 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 297 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 33, 221 |
| Conread position: | 217-615 |
| Cow position: | chr4:357020-356592 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 295 |
| Conread position: | 217-615 |
| Cow position: | chr4:1049145-1049581 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 332 |
| Conread position: | 217-615 |
| Cow position: | chr4:1367080-1367472 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 52, 22 |
| Conread position: | 217-615 |
| Cow position: | chr4:1929524-1929960 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-615 |
| Cow position: | chr4:4417172-4416754 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 356 |
| Conread position: | 217-615 |
| Cow position: | chr4:5443714-5444153 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 217-615 |
| Cow position: | chr4:11836591-11836979 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 262 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 217-615 |
| Cow position: | chr4:12240109-12240540 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 217-615 |
| Cow position: | chr4:12588443-12588016 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-615 |
| Cow position: | chr4:16639721-16639294 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 217-615 |
| Cow position: | chr4:17092751-17093183 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 151 |
| Conread position: | 217-615 |
| Cow position: | chr4:17924850-17925281 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 161 |
| Conread position: | 217-615 |
| Cow position: | chr4:25598374-25598813 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 313 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 24, 207 |
| Conread position: | 217-615 |
| Cow position: | chr4:32213280-32212853 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 296 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 27, 245 |
| Conread position: | 217-615 |
| Cow position: | chr4:33071710-33072137 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 177 |
| Conread position: | 217-615 |
| Cow position: | chr4:43318524-43318959 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 44 |
| Conread position: | 217-615 |
| Cow position: | chr4:44726693-44726277 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 217-615 |
| Cow position: | chr4:44780109-44780542 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 27, 44 |
| Conread position: | 217-615 |
| Cow position: | chr4:44924421-44924840 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 217-615 |
| Cow position: | chr4:45106577-45106141 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-615 |
| Cow position: | chr4:51042174-51042607 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 217-615 |
| Cow position: | chr4:57985103-57984662 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 187 |
| Conread position: | 217-615 |
| Cow position: | chr4:67682308-67681875 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 124 |
| Conread position: | 218-556 |
| Cow position: | chr4:6206713-6206355 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 96 |
| Conread position: | 220-483 |
| Cow position: | chr4:34183533-34183803 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 220-615 |
| Cow position: | chr4:43882218-43881789 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 221-543 |
| Cow position: | chr4:20604809-20604490 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 34, 20 |
| Conread position: | 223-615 |
| Cow position: | chr4:45297992-45298402 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 225-612 |
| Cow position: | chr4:5881267-5880839 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 294 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 226-612 |
| Cow position: | chr4:530507-530085 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 188 |
| Conread position: | 226-615 |
| Cow position: | chr4:13871085-13870692 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 15, 47 |
| Conread position: | 232-522 |
| Cow position: | chr4:65916130-65915815 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 15, 40 |
| Conread position: | 233-615 |
| Cow position: | chr4:16360996-16360595 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 91 |
| Conread position: | 235-530 |
| Cow position: | chr4:5925752-5926064 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 14, 50 |
| Conread position: | 239-488 |
| Cow position: | chr4:48027892-48027634 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 73, 85 |
| Conread position: | 242-449 |
| Cow position: | chr4:57958066-57957860 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 97, 31 |
| Conread position: | 242-560 |
| Cow position: | chr4:13494412-13494074 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 242-615 |
| Cow position: | chr4:3126892-3126479 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 242-615 |
| Cow position: | chr4:18423434-18423842 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 285 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 242-615 |
| Cow position: | chr4:27300404-27300792 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 243-615 |
| Cow position: | chr4:160241-159841 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 117 |
| Conread position: | 243-615 |
| Cow position: | chr4:41955844-41955436 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 282 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 249-615 |
| Cow position: | chr4:28149489-28149118 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 253-560 |
| Cow position: | chr4:11106786-11107095 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 59, 141 |
| Conread position: | 276-431 |
| Cow position: | chr4:48028051-48027891 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 26, 62 |
| Conread position: | 305-549 |
| Cow position: | chr4:46665534-46665280 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 18, 7 |
| Conread position: | 306-615 |
| Cow position: | chr4:604021-603700 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 306-615 |
| Cow position: | chr4:30472240-30471912 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 307-560 |
| Cow position: | chr4:49716678-49716419 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 313-613 |
| Cow position: | chr4:31564305-31564624 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 9 |
| Conread position: | 313-615 |
| Cow position: | chr4:41333684-41333384 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 7 |
| Conread position: | 319-612 |
| Cow position: | chr4:16057674-16057363 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 322-615 |
| Cow position: | chr4:27334701-27334396 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 112, 70 |
| Conread position: | 330-557 |
| Cow position: | chr4:14776434-14776202 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 339-589 |
| Cow position: | chr4:967103-967362 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 95, 253 |
| Conread position: | 344-551 |
| Cow position: | chr4:4439298-4439084 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 87, 160 |
| Conread position: | 377-615 |
| Cow position: | chr4:50985064-50984822 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 387-615 |
| Cow position: | chr4:39270479-39270719 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 407-615 |
| Cow position: | chr4:33494495-33494273 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 32, 112 |
| Conread position: | 475-615 |
| Cow position: | chr4:18517729-18517582 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 86, 30 |
Show alignments to all cow chromosomes.