Cow genome map

Conread name: Lym2-sn67_H09.f

Conread position: 217-429
Cow position: chr5:32281554-32281784 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 33, 0

Conread position: 217-440
Cow position: chr5:10813536-10813780 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 177
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 27, 0

Conread position: 217-477
Cow position: chr5:41376694-41376976 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 198
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 10, 0

Conread position: 217-491
Cow position: chr5:7142850-7143124 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 166
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 101, 56

Conread position: 217-519
Cow position: chr5:29767337-29767012 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 58

Conread position: 217-519
Cow position: chr5:32307903-32308224 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 220
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 81, 14

Conread position: 217-550
Cow position: chr5:987854-988210 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 241
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 24, 111

Conread position: 217-555
Cow position: chr5:5104436-5104069 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 257
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 27, 0

Conread position: 217-557
Cow position: chr5:3502894-3503261 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 217-557
Cow position: chr5:12642535-12642890 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 299

Conread position: 217-557
Cow position: chr5:24151988-24151629 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 260
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 24, 314

Conread position: 217-560
Cow position: chr5:31707777-31707404 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 267
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 27, 202

Conread position: 217-565
Cow position: chr5:14784155-14784518 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 261
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 23, 247

Conread position: 217-565
Cow position: chr5:46777607-46777243 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 259
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 27, 201

Conread position: 217-609
Cow position: chr5:34298129-34297726 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 279
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 41, 24

Conread position: 217-611
Cow position: chr5:1340816-1341250 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 217-612
Cow position: chr5:18121268-18121701 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 298
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 27, 0

Conread position: 217-612
Cow position: chr5:23686685-23687109 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 302
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 84, 36

Conread position: 217-612
Cow position: chr5:23959115-23959535 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 286
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 27, 154

Conread position: 217-612
Cow position: chr5:46004643-46005075 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 307
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 24, 162

Conread position: 217-613
Cow position: chr5:41554121-41554553 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 308
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 62, 253

Conread position: 217-613
Cow position: chr5:46737375-46737795 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 128

Conread position: 217-614
Cow position: chr5:10855603-10856036 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 217-614
Cow position: chr5:41527579-41527994 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 313

Conread position: 217-615
Cow position: chr5:2915656-2915225 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 29

Conread position: 217-615
Cow position: chr5:3965657-3965229 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 8

Conread position: 217-615
Cow position: chr5:4070435-4069992 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 217-615
Cow position: chr5:6153685-6154122 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 332

Conread position: 217-615
Cow position: chr5:10842167-10842599 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 294
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 27, 203

Conread position: 217-615
Cow position: chr5:12731500-12731932 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 217-615
Cow position: chr5:14344224-14344639 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 288
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 27, 241

Conread position: 217-615
Cow position: chr5:18885322-18885748 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 277

Conread position: 217-615
Cow position: chr5:23668920-23669351 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 295
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 66, 15

Conread position: 217-615
Cow position: chr5:24099875-24099445 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 340

Conread position: 217-615
Cow position: chr5:28949667-28950084 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 295
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 24, 84

Conread position: 217-615
Cow position: chr5:31100214-31100645 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 310
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 30, 190

Conread position: 217-615
Cow position: chr5:32773979-32773553 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 210

Conread position: 217-615
Cow position: chr5:34697815-34697382 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 217-615
Cow position: chr5:35301312-35300876 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 217-615
Cow position: chr5:41960532-41960950 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 184

Conread position: 217-615
Cow position: chr5:42506219-42505783 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 293
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 27, 0

Conread position: 217-615
Cow position: chr5:47829863-47830293 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 217-615
Cow position: chr5:48807518-48807960 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 217-615
Cow position: chr5:49519770-49519339 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 217-615
Cow position: chr5:49757490-49757886 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 284
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 30, 76

Conread position: 217-615
Cow position: chr5:54791418-54791856 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 217-615
Cow position: chr5:55629208-55628770 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 217-615
Cow position: chr5:57481326-57481760 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 217-615
Cow position: chr5:64780801-64781237 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 103

Conread position: 217-615
Cow position: chr5:73488346-73488779 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 286

Conread position: 220-609
Cow position: chr5:24107479-24107896 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 288
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 63, 31

Conread position: 220-615
Cow position: chr5:4386448-4386022 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 156

Conread position: 220-615
Cow position: chr5:32364144-32363748 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 265
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 21, 71

Conread position: 220-615
Cow position: chr5:46669145-46668728 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 181

Conread position: 220-615
Cow position: chr5:59283527-59283095 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 221-476
Cow position: chr5:40923436-40923713 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 195
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 16, 0

Conread position: 221-612
Cow position: chr5:46628978-46629399 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 50

Conread position: 221-612
Cow position: chr5:51308678-51309074 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 26

Conread position: 221-615
Cow position: chr5:7275049-7274629 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 8

Conread position: 221-615
Cow position: chr5:27908061-27908492 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 296
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 23, 320

Conread position: 221-615
Cow position: chr5:53006819-53006407 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 265
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 56, 149

Conread position: 222-433
Cow position: chr5:27003438-27003213 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 173
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 25, 41

Conread position: 222-555
Cow position: chr5:48855414-48855063 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 245
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 68, 19

Conread position: 223-615
Cow position: chr5:3787129-3786698 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 20

Conread position: 224-615
Cow position: chr5:18664985-18664575 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 286
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 55, 13

Conread position: 224-615
Cow position: chr5:58197201-58196794 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 97

Conread position: 226-612
Cow position: chr5:26077987-26078412 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 295
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 18, 191

Conread position: 226-615
Cow position: chr5:4756978-4757385 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 277
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 18, 111

Conread position: 227-609
Cow position: chr5:41929056-41929447 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 264
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 96, 52

Conread position: 233-509
Cow position: chr5:26184033-26183735 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 212
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 45, 188

Conread position: 241-615
Cow position: chr5:40789245-40788844 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 25

Conread position: 242-525
Cow position: chr5:18560221-18560526 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 223
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 37, 133

Conread position: 242-555
Cow position: chr5:59061823-59061483 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 239
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 37, 0

Conread position: 242-611
Cow position: chr5:37733534-37733126 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 243-554
Cow position: chr5:4018014-4018347 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 235
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 40, 118

Conread position: 243-615
Cow position: chr5:45701498-45701091 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 133

Conread position: 244-612
Cow position: chr5:46665192-46664799 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 264
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 39, 84

Conread position: 249-540
Cow position: chr5:48137172-48137479 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 213
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 30, 46

Conread position: 258-614
Cow position: chr5:41956220-41956592 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 270
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 54, 64

Conread position: 305-613
Cow position: chr5:28012778-28012435 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 241
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 15, 5

Conread position: 306-461
Cow position: chr5:44329-44483 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 8, 17

Conread position: 306-532
Cow position: chr5:29434613-29434842 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 9, 17

Conread position: 306-615
Cow position: chr5:10919924-10919605 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 17

Conread position: 306-615
Cow position: chr5:46808417-46808090 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 235
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 8, 17

Conread position: 307-520
Cow position: chr5:15375810-15375598 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 141, 45

Conread position: 307-615
Cow position: chr5:41466180-41465852 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 225
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 7, 16

Conread position: 313-615
Cow position: chr5:1227774-1227451 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 220
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 20, 9

Conread position: 314-560
Cow position: chr5:58151689-58151941 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 180
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 133, 17

Conread position: 322-543
Cow position: chr5:46646028-46645824 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 110, 0

Conread position: 322-565
Cow position: chr5:6587932-6588173 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 110, 0

Conread position: 322-615
Cow position: chr5:307238-307549 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 219
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 112, 0

Conread position: 322-615
Cow position: chr5:10775181-10775492 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 224
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 120, 91

Conread position: 331-505
Cow position: chr5:31700291-31700474 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 43, 49

Conread position: 331-611
Cow position: chr5:53624843-53625140 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 223
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 8, 50

Conread position: 337-607
Cow position: chr5:18400625-18400903 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 194
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 106, 28

Conread position: 337-615
Cow position: chr5:24998916-24999207 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 191

Conread position: 342-615
Cow position: chr5:13046525-13046225 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 35

Conread position: 342-615
Cow position: chr5:39017105-39016815 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 200
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 92, 0

Conread position: 357-615
Cow position: chr5:27654865-27654594 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 209
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 84, 133

Conread position: 359-615
Cow position: chr5:38074083-38073810 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 188
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 75, 0

Show alignments to all cow chromosomes.