Cow genome map

Conread name: Lym2-sn67_H09.f

Conread position: 208-615
Cow position: chr9:1250733-1251141 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 275
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 38, 21

Conread position: 216-555
Cow position: chr9:33243062-33243410 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 234
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 33

Conread position: 216-612
Cow position: chr9:54925816-54925404 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 58

Conread position: 216-615
Cow position: chr9:4533775-4533340 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 308
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 46, 31

Conread position: 216-615
Cow position: chr9:60276759-60277166 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 96

Conread position: 217-431
Cow position: chr9:26737036-26736802 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 177
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 28, 0

Conread position: 217-470
Cow position: chr9:4666452-4666189 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 179
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 33, 53

Conread position: 217-482
Cow position: chr9:44384544-44384249 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 212
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 27, 0

Conread position: 217-484
Cow position: chr9:3309897-3309614 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 204
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 27, 169

Conread position: 217-505
Cow position: chr9:2054204-2053891 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 219
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 24, 83

Conread position: 217-511
Cow position: chr9:20939592-20939282 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 222
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 33, 276

Conread position: 217-527
Cow position: chr9:46859178-46859518 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 241
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 27, 0

Conread position: 217-555
Cow position: chr9:129882-130251 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 259
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 27, 84

Conread position: 217-555
Cow position: chr9:2871610-2871245 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 252
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 27, 0

Conread position: 217-581
Cow position: chr9:50698583-50698193 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 160

Conread position: 217-609
Cow position: chr9:3764274-3763855 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 284
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 75, 40

Conread position: 217-612
Cow position: chr9:7060795-7061231 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 266

Conread position: 217-612
Cow position: chr9:35315609-35316025 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 87

Conread position: 217-612
Cow position: chr9:59428287-59427881 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 285
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 30, 191

Conread position: 217-612
Cow position: chr9:59537379-59536949 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 217-614
Cow position: chr9:46041967-46042366 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 283
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 103, 33

Conread position: 217-615
Cow position: chr9:1981548-1981122 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 100

Conread position: 217-615
Cow position: chr9:3544133-3543707 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 283
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 50, 13

Conread position: 217-615
Cow position: chr9:3727873-3727447 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 292
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 33, 14

Conread position: 217-615
Cow position: chr9:4649331-4649750 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 290
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 31, 154

Conread position: 217-615
Cow position: chr9:4942528-4942958 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 155

Conread position: 217-615
Cow position: chr9:5141982-5141567 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 285
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 26, 94

Conread position: 217-615
Cow position: chr9:10937876-10937442 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 217-615
Cow position: chr9:13474492-13474941 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 304
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 33, 0

Conread position: 217-615
Cow position: chr9:16177032-16176618 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 71

Conread position: 217-615
Cow position: chr9:17304694-17305128 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 222

Conread position: 217-615
Cow position: chr9:18508542-18508964 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 356

Conread position: 217-615
Cow position: chr9:21410582-21410142 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 217-615
Cow position: chr9:22654860-22654421 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 217-615
Cow position: chr9:25188378-25187952 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 217-615
Cow position: chr9:26083288-26083676 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 276
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 33, 76

Conread position: 217-615
Cow position: chr9:27783472-27783033 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 103

Conread position: 217-615
Cow position: chr9:28679256-28678819 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 217-615
Cow position: chr9:29026926-29027362 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 217-615
Cow position: chr9:30673661-30673215 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 217-615
Cow position: chr9:32970225-32969796 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 217-615
Cow position: chr9:37161529-37161964 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 40

Conread position: 217-615
Cow position: chr9:37969927-37970347 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 71

Conread position: 217-615
Cow position: chr9:44819425-44818996 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 57

Conread position: 217-615
Cow position: chr9:51180898-51181335 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 93

Conread position: 217-615
Cow position: chr9:51211965-51211529 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 300
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 27, 0

Conread position: 217-615
Cow position: chr9:59481516-59481944 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 217-615
Cow position: chr9:64015389-64015793 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 284
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 25, 56

Conread position: 220-554
Cow position: chr9:52033969-52033621 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 252
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 21, 45

Conread position: 220-612
Cow position: chr9:39730783-39731207 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 290
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 21, 219

Conread position: 220-615
Cow position: chr9:4283252-4282821 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 68

Conread position: 220-615
Cow position: chr9:31808831-31808425 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 47

Conread position: 221-437
Cow position: chr9:38677424-38677187 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 23, 0

Conread position: 221-536
Cow position: chr9:7158695-7159012 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 217
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 213, 26

Conread position: 221-557
Cow position: chr9:32295979-32296332 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 241
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 17, 142

Conread position: 221-615
Cow position: chr9:650747-651167 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 330

Conread position: 221-615
Cow position: chr9:29329909-29329483 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 289
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 9, 45

Conread position: 223-554
Cow position: chr9:3962856-3963211 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 256
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 12, 63

Conread position: 223-609
Cow position: chr9:30488842-30488448 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 266
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 21, 46

Conread position: 223-615
Cow position: chr9:9014360-9013943 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 228

Conread position: 225-615
Cow position: chr9:47003454-47003042 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 7

Conread position: 225-615
Cow position: chr9:50728879-50729287 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 278
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 25, 43

Conread position: 225-615
Cow position: chr9:50791979-50791561 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 287
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 50, 16

Conread position: 226-612
Cow position: chr9:31065992-31065569 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 290
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 18, 0

Conread position: 227-615
Cow position: chr9:28655618-28655198 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 291
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 11, 78

Conread position: 231-561
Cow position: chr9:19158279-19158629 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 11

Conread position: 231-615
Cow position: chr9:29627489-29627904 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 235-615
Cow position: chr9:5005204-5004820 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 18

Conread position: 242-560
Cow position: chr9:221268-221604 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 235
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 37, 90

Conread position: 242-612
Cow position: chr9:779566-779958 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 268
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 37, 216

Conread position: 242-612
Cow position: chr9:1995134-1995540 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 242-615
Cow position: chr9:6250553-6250147 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 143

Conread position: 242-615
Cow position: chr9:28023057-28022653 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 289
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 37, 94

Conread position: 242-615
Cow position: chr9:30827993-30827585 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 282
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 15, 0

Conread position: 242-615
Cow position: chr9:42310931-42310529 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 76

Conread position: 243-555
Cow position: chr9:47043211-47042887 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 234
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 35, 209

Conread position: 243-560
Cow position: chr9:27935631-27935300 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 237
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 39, 216

Conread position: 247-551
Cow position: chr9:2212387-2212059 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 235
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 32, 252

Conread position: 247-552
Cow position: chr9:5798548-5798878 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 233
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 32, 0

Conread position: 252-615
Cow position: chr9:8165635-8166033 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 281
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 30, 176

Conread position: 255-504
Cow position: chr9:59447577-59447314 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 24, 120

Conread position: 300-614
Cow position: chr9:12063171-12062846 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 216
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 24, 205

Conread position: 305-615
Cow position: chr9:6977506-6977186 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 220
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 9, 38

Conread position: 306-615
Cow position: chr9:25903679-25903360 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 215
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 8, 17

Conread position: 317-547
Cow position: chr9:41467990-41467759 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 52

Conread position: 322-517
Cow position: chr9:239314-239509 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 77, 60

Conread position: 322-615
Cow position: chr9:45874496-45874184 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 224
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 70, 77

Conread position: 327-555
Cow position: chr9:30435726-30435490 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 15, 8

Conread position: 338-615
Cow position: chr9:28440951-28440657 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 96, 0

Conread position: 344-615
Cow position: chr9:22432409-22432124 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 212
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 114, 176

Conread position: 354-615
Cow position: chr9:5515539-5515266 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 204
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 87, 28

Conread position: 357-615
Cow position: chr9:27035806-27035531 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 199
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 82, 0

Conread position: 376-513
Cow position: chr9:18211329-18211184 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 58, 139

Conread position: 397-615
Cow position: chr9:3148193-3148422 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 42, 83

Show alignments to all cow chromosomes.