Cow genome map

Conread name: Lym2-sn78_G06.f

Conread position: 1-274
Cow position: chr13:15542780-15543057 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 142, 24

Conread position: 1-429
Cow position: chr13:60704209-60703786 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 290
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 17, 111

Conread position: 4-206
Cow position: chr13:41607027-41607227 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 34, 60

Conread position: 4-428
Cow position: chr13:46733035-46732609 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 111

Conread position: 4-516
Cow position: chr13:34868089-34868606 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 8

Conread position: 4-575
Cow position: chr13:34187366-34186791 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 50

Conread position: 4-576
Cow position: chr13:54283912-54284464 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 26

Conread position: 5-351
Cow position: chr13:35029839-35030181 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 206
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 104

Conread position: 8-516
Cow position: chr13:2231996-2232493 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 32

Conread position: 10-248
Cow position: chr13:34767896-34767676 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 68, 0

Conread position: 10-575
Cow position: chr13:30063480-30064019 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 373
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 8, 35

Conread position: 11-575
Cow position: chr13:20543040-20542480 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 99

Conread position: 12-559
Cow position: chr13:48356658-48357183 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 96

Conread position: 13-508
Cow position: chr13:2305833-2306328 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 23

Conread position: 13-572
Cow position: chr13:14391988-14392528 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 359
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 26, 44

Conread position: 13-574
Cow position: chr13:6668804-6668230 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 100

Conread position: 17-575
Cow position: chr13:33336996-33336448 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 319

Conread position: 18-575
Cow position: chr13:34143328-34142765 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 31

Conread position: 18-576
Cow position: chr13:2909113-2908555 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 31

Conread position: 18-576
Cow position: chr13:3276486-3277049 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 93

Conread position: 18-576
Cow position: chr13:31831938-31832495 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 87

Conread position: 18-576
Cow position: chr13:33928215-33927675 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 31

Conread position: 18-576
Cow position: chr13:34692502-34693058 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 31

Conread position: 18-576
Cow position: chr13:62328252-62327689 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 93

Conread position: 19-575
Cow position: chr13:34936469-34937041 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 87

Conread position: 30-560
Cow position: chr13:23410649-23410124 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 340
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 80, 13

Conread position: 35-576
Cow position: chr13:34912017-34911483 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 67

Conread position: 36-568
Cow position: chr13:30140342-30140880 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 72

Conread position: 36-576
Cow position: chr13:15080821-15080319 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 347
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 252, 70

Conread position: 36-576
Cow position: chr13:31560541-31561082 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 357
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 107, 32

Conread position: 37-246
Cow position: chr13:53834121-53834334 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 107, 73

Conread position: 37-424
Cow position: chr13:4481825-4482212 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 67

Conread position: 37-486
Cow position: chr13:32544297-32544744 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 67

Conread position: 37-558
Cow position: chr13:3654957-3654439 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 67

Conread position: 37-561
Cow position: chr13:30302421-30302944 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 65

Conread position: 37-571
Cow position: chr13:15521165-15520625 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 67

Conread position: 37-573
Cow position: chr13:2297447-2296906 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 20

Conread position: 37-574
Cow position: chr13:4940435-4940981 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 71

Conread position: 37-574
Cow position: chr13:31734723-31734188 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 71

Conread position: 37-575
Cow position: chr13:1593806-1593261 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 39

Conread position: 37-575
Cow position: chr13:32986695-32986162 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 54

Conread position: 37-576
Cow position: chr13:2389447-2388923 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 68

Conread position: 37-576
Cow position: chr13:4872428-4872972 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 73

Conread position: 37-576
Cow position: chr13:15925034-15924489 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 68

Conread position: 37-576
Cow position: chr13:17307834-17308370 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 71

Conread position: 37-576
Cow position: chr13:21840847-21840299 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 68

Conread position: 37-576
Cow position: chr13:30245385-30244838 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 71

Conread position: 37-576
Cow position: chr13:31612986-31612440 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 68

Conread position: 37-576
Cow position: chr13:32738459-32737927 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 67

Conread position: 37-576
Cow position: chr13:34043014-34042474 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 64

Conread position: 37-576
Cow position: chr13:35756580-35757136 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 67

Conread position: 37-576
Cow position: chr13:50108816-50109357 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 25

Conread position: 40-472
Cow position: chr13:30237530-30237956 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 64

Conread position: 43-364
Cow position: chr13:13046467-13046142 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 63

Conread position: 44-576
Cow position: chr13:34326303-34325780 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 61

Conread position: 49-575
Cow position: chr13:30657600-30657080 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 55

Conread position: 49-576
Cow position: chr13:33825376-33824836 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 59

Conread position: 63-341
Cow position: chr13:32525359-32525085 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 200
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 198, 41

Conread position: 67-381
Cow position: chr13:3058614-3058293 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 43

Conread position: 97-367
Cow position: chr13:3338257-3338530 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 193
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 157, 7

Conread position: 106-576
Cow position: chr13:9043928-9044396 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 197

Conread position: 144-417
Cow position: chr13:47859916-47860182 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 190
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 144, 7

Conread position: 165-307
Cow position: chr13:32606693-32606548 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 80, 0

Conread position: 189-576
Cow position: chr13:13324262-13324644 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 61

Conread position: 193-576
Cow position: chr13:56730764-56730391 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 33

Conread position: 198-560
Cow position: chr13:43801502-43801854 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 233
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 264, 52

Conread position: 228-576
Cow position: chr13:49973226-49973579 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 166

Conread position: 234-573
Cow position: chr13:23003966-23003624 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 160

Conread position: 319-571
Cow position: chr13:34767638-34767396 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 189
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 196, 55

Show alignments to all cow chromosomes.