Cow genome map

Conread name: Lym2-sn78_G06.f

Conread position: 1-340
Cow position: chr14:34774792-34775129 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 25

Conread position: 1-342
Cow position: chr14:44780722-44780380 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 237
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 32, 113

Conread position: 1-567
Cow position: chr14:44783062-44782499 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 113

Conread position: 3-247
Cow position: chr14:50134106-50134349 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 16, 51

Conread position: 4-229
Cow position: chr14:38145831-38146060 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 155
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 24, 101

Conread position: 4-259
Cow position: chr14:44551244-44551506 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 103

Conread position: 4-550
Cow position: chr14:40170490-40169940 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 108

Conread position: 4-562
Cow position: chr14:44376624-44377186 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 99

Conread position: 4-567
Cow position: chr14:11467793-11468348 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 18

Conread position: 4-574
Cow position: chr14:46083824-46084391 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 28

Conread position: 4-574
Cow position: chr14:47589069-47589640 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 24

Conread position: 4-576
Cow position: chr14:22018587-22019164 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 103

Conread position: 4-576
Cow position: chr14:35928362-35928950 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 151

Conread position: 4-576
Cow position: chr14:40338899-40339454 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 104

Conread position: 4-576
Cow position: chr14:44225607-44226168 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 99

Conread position: 4-576
Cow position: chr14:45833352-45833925 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 38

Conread position: 5-479
Cow position: chr14:47921211-47921672 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 320
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 35, 92

Conread position: 6-546
Cow position: chr14:31607732-31607187 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 104

Conread position: 6-567
Cow position: chr14:14309871-14309314 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 103

Conread position: 7-576
Cow position: chr14:2283538-2284110 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 387

Conread position: 8-283
Cow position: chr14:41085608-41085335 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 32

Conread position: 9-483
Cow position: chr14:44580138-44580597 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 90

Conread position: 9-576
Cow position: chr14:47653968-47654509 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 374
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 283, 14

Conread position: 10-571
Cow position: chr14:35387931-35387383 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 36

Conread position: 10-574
Cow position: chr14:45079732-45080289 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 95

Conread position: 12-560
Cow position: chr14:44261891-44261338 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 88

Conread position: 13-576
Cow position: chr14:44685243-44685814 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 97

Conread position: 16-576
Cow position: chr14:13660790-13660217 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 91

Conread position: 18-247
Cow position: chr14:1499957-1500193 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 171
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 29, 88

Conread position: 18-574
Cow position: chr14:44130135-44130684 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 31

Conread position: 18-576
Cow position: chr14:36967465-36968026 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 31

Conread position: 18-576
Cow position: chr14:45712774-45712215 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 91

Conread position: 19-568
Cow position: chr14:45205285-45205841 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 22

Conread position: 23-576
Cow position: chr14:17684611-17685167 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 14

Conread position: 23-576
Cow position: chr14:41755083-41755615 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 82

Conread position: 32-571
Cow position: chr14:23260712-23260156 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 360
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 111, 42

Conread position: 34-576
Cow position: chr14:16920458-16919919 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 9

Conread position: 36-342
Cow position: chr14:14422783-14422489 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 222
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 107, 64

Conread position: 36-440
Cow position: chr14:48703831-48704232 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 258
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 106, 68

Conread position: 36-520
Cow position: chr14:48150716-48150240 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 321
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 108, 55

Conread position: 36-544
Cow position: chr14:43552645-43553161 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 73

Conread position: 37-244
Cow position: chr14:2283213-2283424 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 107, 71

Conread position: 37-566
Cow position: chr14:46669553-46670068 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 338
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 28, 69

Conread position: 37-574
Cow position: chr14:23256582-23257128 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 71

Conread position: 37-576
Cow position: chr14:749801-750341 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 71

Conread position: 37-576
Cow position: chr14:5528292-5528833 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 67

Conread position: 37-576
Cow position: chr14:7471601-7472145 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 67

Conread position: 37-576
Cow position: chr14:9044790-9045337 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 71

Conread position: 37-576
Cow position: chr14:11154928-11154394 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 69

Conread position: 37-576
Cow position: chr14:13272488-13273023 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 67

Conread position: 37-576
Cow position: chr14:13302256-13302801 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 67

Conread position: 37-576
Cow position: chr14:16274072-16273524 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 68

Conread position: 37-576
Cow position: chr14:17001822-17001283 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 50

Conread position: 37-576
Cow position: chr14:17492226-17491685 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 71

Conread position: 37-576
Cow position: chr14:20781684-20782227 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 69

Conread position: 37-576
Cow position: chr14:22032457-22031916 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 68

Conread position: 37-576
Cow position: chr14:28994631-28994083 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 70

Conread position: 37-576
Cow position: chr14:29048669-29048132 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 73

Conread position: 37-576
Cow position: chr14:30585711-30585180 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 71

Conread position: 37-576
Cow position: chr14:30597150-30596613 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 207

Conread position: 37-576
Cow position: chr14:37223127-37223673 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 68

Conread position: 37-576
Cow position: chr14:45672818-45672273 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 73

Conread position: 37-576
Cow position: chr14:50109805-50110337 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 58

Conread position: 39-572
Cow position: chr14:44856198-44855659 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 65

Conread position: 40-456
Cow position: chr14:45160092-45160515 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 63

Conread position: 40-575
Cow position: chr14:48255084-48254545 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 64

Conread position: 40-576
Cow position: chr14:19329038-19328497 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 64

Conread position: 43-224
Cow position: chr14:17241472-17241651 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 67, 0

Conread position: 45-324
Cow position: chr14:44616524-44616807 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 197
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 7, 171

Conread position: 45-576
Cow position: chr14:23690994-23690458 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 57

Conread position: 45-576
Cow position: chr14:45767242-45767773 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 27

Conread position: 49-572
Cow position: chr14:45850465-45850989 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 59

Conread position: 49-576
Cow position: chr14:47623808-47624331 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 58

Conread position: 50-576
Cow position: chr14:38533059-38532521 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 18

Conread position: 57-565
Cow position: chr14:23529747-23529263 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 339
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 86, 50

Conread position: 61-576
Cow position: chr14:13326860-13326370 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 343
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 82, 43

Conread position: 65-576
Cow position: chr14:7831281-7830769 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 39

Conread position: 66-576
Cow position: chr14:45916655-45917189 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 67-298
Cow position: chr14:13778119-13778357 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 80, 38

Conread position: 82-576
Cow position: chr14:33394498-33394005 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 63

Conread position: 88-576
Cow position: chr14:12608502-12608953 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 16

Conread position: 107-576
Cow position: chr14:44421852-44422325 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 133

Conread position: 182-502
Cow position: chr14:13622236-13621915 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 22

Conread position: 182-575
Cow position: chr14:42151698-42152093 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 168

Conread position: 192-576
Cow position: chr14:45303976-45303593 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 190

Conread position: 228-576
Cow position: chr14:23901381-23901029 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 166

Conread position: 242-438
Cow position: chr14:1500467-1500659 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 153
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 46, 141

Conread position: 245-576
Cow position: chr14:46464509-46464844 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 147

Conread position: 293-572
Cow position: chr14:41085295-41085015 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 99

Conread position: 392-576
Cow position: chr14:19619811-19619991 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 143
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 126, 30

Show alignments to all cow chromosomes.