Cow genome map

Conread name: Lym2-sn78_G06.f

Conread position: 1-315
Cow position: chr16:14422563-14422881 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 222
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 142, 34

Conread position: 1-336
Cow position: chr16:29031762-29032100 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 82

Conread position: 1-564
Cow position: chr16:5888339-5888879 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 108

Conread position: 1-576
Cow position: chr16:25157374-25156797 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 33

Conread position: 4-201
Cow position: chr16:5589040-5589247 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 19, 110

Conread position: 4-340
Cow position: chr16:9776977-9777321 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 101

Conread position: 4-429
Cow position: chr16:44964890-44965329 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 304
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 28, 113

Conread position: 4-436
Cow position: chr16:49236267-49235830 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 58

Conread position: 4-447
Cow position: chr16:29982114-29982579 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 315
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 30, 162

Conread position: 4-574
Cow position: chr16:15491561-15492132 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 33

Conread position: 4-575
Cow position: chr16:10204575-10204006 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 108

Conread position: 4-575
Cow position: chr16:31376385-31375856 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 100

Conread position: 4-576
Cow position: chr16:1568598-1568029 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 21

Conread position: 4-576
Cow position: chr16:8817256-8816679 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 32

Conread position: 4-576
Cow position: chr16:9929396-9929965 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 99

Conread position: 4-576
Cow position: chr16:12539081-12538499 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 103

Conread position: 5-576
Cow position: chr16:51685289-51685862 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 111

Conread position: 6-324
Cow position: chr16:27004221-27004541 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 223
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 11, 68

Conread position: 8-477
Cow position: chr16:23670737-23670272 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 100

Conread position: 8-576
Cow position: chr16:36232748-36232185 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 98

Conread position: 9-574
Cow position: chr16:25084474-25085044 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 51

Conread position: 10-413
Cow position: chr16:16687717-16688131 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 75

Conread position: 10-537
Cow position: chr16:40887418-40886872 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 107

Conread position: 10-576
Cow position: chr16:31612-32165 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 39

Conread position: 10-576
Cow position: chr16:31593057-31592479 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 102

Conread position: 10-576
Cow position: chr16:42051492-42050962 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 97

Conread position: 15-279
Cow position: chr16:15369296-15369560 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 200
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 25, 94

Conread position: 16-576
Cow position: chr16:2239872-2239307 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 43

Conread position: 18-217
Cow position: chr16:39818484-39818690 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 29, 91

Conread position: 18-350
Cow position: chr16:19713990-19713649 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 89

Conread position: 18-516
Cow position: chr16:25152636-25153126 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 123

Conread position: 18-574
Cow position: chr16:36282260-36282827 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 24

Conread position: 18-576
Cow position: chr16:6549659-6549099 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 31

Conread position: 19-576
Cow position: chr16:42740554-42739998 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 13

Conread position: 23-542
Cow position: chr16:18688255-18687734 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 86

Conread position: 23-553
Cow position: chr16:54647200-54647719 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 83

Conread position: 34-351
Cow position: chr16:9457407-9457726 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 209
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 112, 29

Conread position: 36-349
Cow position: chr16:32935033-32935333 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 68

Conread position: 37-222
Cow position: chr16:14666908-14666719 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 106, 67

Conread position: 37-262
Cow position: chr16:21185161-21185392 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 167
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 107, 68

Conread position: 37-367
Cow position: chr16:10376383-10376057 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 197
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 251, 50

Conread position: 37-376
Cow position: chr16:6966352-6966691 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 221
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 30, 68

Conread position: 37-551
Cow position: chr16:1430107-1430623 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 65

Conread position: 37-555
Cow position: chr16:32605707-32606233 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 74

Conread position: 37-566
Cow position: chr16:2728433-2727886 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 67

Conread position: 37-567
Cow position: chr16:6942502-6943040 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 71

Conread position: 37-573
Cow position: chr16:408152-407610 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 71

Conread position: 37-574
Cow position: chr16:29045911-29046445 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 68

Conread position: 37-574
Cow position: chr16:49257691-49257160 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 180

Conread position: 37-575
Cow position: chr16:28472216-28471677 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 68

Conread position: 37-576
Cow position: chr16:4303590-4303052 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 73

Conread position: 37-576
Cow position: chr16:5660747-5661275 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 71

Conread position: 37-576
Cow position: chr16:5918363-5918908 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 75

Conread position: 37-576
Cow position: chr16:10437137-10437668 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 67

Conread position: 37-576
Cow position: chr16:15183686-15184228 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 67

Conread position: 37-576
Cow position: chr16:25340851-25341390 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 68

Conread position: 37-576
Cow position: chr16:25440494-25441043 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 67

Conread position: 37-576
Cow position: chr16:25458595-25458046 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 67

Conread position: 37-576
Cow position: chr16:28171479-28170938 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 38

Conread position: 37-576
Cow position: chr16:40297295-40296753 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 65

Conread position: 37-576
Cow position: chr16:43898388-43897843 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 69

Conread position: 40-474
Cow position: chr16:24881804-24881369 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 61

Conread position: 43-575
Cow position: chr16:2484251-2483718 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 65

Conread position: 43-576
Cow position: chr16:23253614-23253082 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 59

Conread position: 43-576
Cow position: chr16:26662641-26663174 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 11

Conread position: 46-543
Cow position: chr16:47562585-47563073 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 54

Conread position: 49-432
Cow position: chr16:7905535-7905924 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 63

Conread position: 49-527
Cow position: chr16:29676413-29675934 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 59

Conread position: 49-576
Cow position: chr16:11052065-11052587 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 59

Conread position: 50-388
Cow position: chr16:7676800-7676459 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 55

Conread position: 57-567
Cow position: chr16:24155527-24155028 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 327
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 16, 48

Conread position: 57-576
Cow position: chr16:15565650-15566175 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 48

Conread position: 58-576
Cow position: chr16:20255406-20254886 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 50

Conread position: 66-218
Cow position: chr16:5483413-5483259 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 87, 38

Conread position: 66-515
Cow position: chr16:52815706-52815275 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 397, 34

Conread position: 66-576
Cow position: chr16:23982220-23982736 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 38

Conread position: 66-576
Cow position: chr16:27734896-27734377 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 39

Conread position: 68-567
Cow position: chr16:28438861-28438372 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 315
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 11, 34

Conread position: 155-574
Cow position: chr16:16276502-16276084 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 18

Conread position: 156-567
Cow position: chr16:11111931-11111527 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 272
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 132, 49

Conread position: 157-576
Cow position: chr16:2411966-2411544 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 197

Conread position: 179-576
Cow position: chr16:25187668-25188068 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 6

Conread position: 188-574
Cow position: chr16:36362313-36361940 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 62

Conread position: 193-573
Cow position: chr16:10808206-10808572 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 57

Conread position: 193-576
Cow position: chr16:56551168-56551550 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 168

Conread position: 200-455
Cow position: chr16:13017950-13018210 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 169
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 55, 192

Conread position: 210-381
Cow position: chr16:56320894-56321068 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 38, 0

Conread position: 210-576
Cow position: chr16:5651808-5652164 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 252
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 46, 155

Conread position: 210-576
Cow position: chr16:39820695-39821057 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 40

Conread position: 241-576
Cow position: chr16:34529413-34529746 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 147

Conread position: 247-574
Cow position: chr16:26650530-26650851 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 226
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 270, 136

Conread position: 289-461
Cow position: chr16:4442012-4442178 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 136, 0

Conread position: 332-526
Cow position: chr16:29032340-29032534 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 184, 51

Conread position: 402-576
Cow position: chr16:44966420-44966597 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 31, 132

Show alignments to all cow chromosomes.